PPP1R35-AS1 (PPP1R35 antisense RNA 1) - Rat Genome Database

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Gene: PPP1R35-AS1 (PPP1R35 antisense RNA 1) Homo sapiens
Analyze
Symbol: PPP1R35-AS1
Name: PPP1R35 antisense RNA 1
RGD ID: 14700603
HGNC Page HGNC:41194
Description: ASSOCIATED WITH genetic disease; INTERACTS WITH lipopolysaccharide; methylisothiazolinone; S-(1,2-dichlorovinyl)-L-cysteine
Type: ncrna
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387100,436,668 - 100,439,877 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh377100,033,647 - 100,037,661 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q22.1NCBI
HuRef794,667,083 - 94,671,097 (+)NCBIHuRef
CHM1_1799,964,260 - 99,968,274 (+)NCBICHM1_1
T2T-CHM13v2.07101,676,746 - 101,679,955 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in PPP1R35-AS1
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7q22.1(chr7:99932610-102473188)x3 copy number gain See cases [RCV000138109] Chr7:99932610..102473188 [GRCh38]
Chr7:99530233..102113635 [GRCh37]
Chr7:99368169..101900640 [NCBI36]
Chr7:7q22.1		 uncertain significance
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3		 pathogenic
GRCh38/hg38 7q22.1(chr7:100419914-102482826)x1 copy number loss See cases [RCV000054155] Chr7:100419914..102482826 [GRCh38]
Chr7:100017537..102123273 [GRCh37]
Chr7:99855473..101910278 [NCBI36]
Chr7:7q22.1		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q22.1(chr7:99219420-100902269)x1 copy number loss See cases [RCV000054154] Chr7:99219420..100902269 [GRCh38]
Chr7:98817043..100499889 [GRCh37]
Chr7:98654979..100337825 [NCBI36]
Chr7:7q22.1		 pathogenic
GRCh38/hg38 7q21.3-22.1(chr7:98288474-101259804)x3 copy number gain See cases [RCV000053573] Chr7:98288474..101259804 [GRCh38]
Chr7:97917786..100903085 [GRCh37]
Chr7:97755722..100689805 [NCBI36]
Chr7:7q21.3-22.1		 pathogenic
GRCh38/hg38 7q22.1(chr7:99195836-102258175)x1 copy number loss See cases [RCV000135782] Chr7:99195836..102258175 [GRCh38]
Chr7:98793459..101718950 [GRCh37]
Chr7:98631395..101688175 [NCBI36]
Chr7:7q22.1		 pathogenic|uncertain significance
NM_145030.4(PPP1R35):c.46G>A (p.Glu16Lys) single nucleotide variant Inborn genetic diseases [RCV002804603] Chr7:100436329 [GRCh38]
Chr7:100033952 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh38/hg38 7q22.1(chr7:98454022-100723798)x1 copy number loss Multiple congenital anomalies/dysmorphic syndrome [RCV003327701] Chr7:98454022..100723798 [GRCh38]
Chr7:7q22.1		 pathogenic

Expression


Sequence


Reference Sequences
RefSeq Acc Id: NR_187540
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387100,436,668 - 100,439,877 (+)NCBI
T2T-CHM13v2.07101,676,746 - 101,679,955 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC PPP1R35-AS1 COSMIC
GTEx PPP1R35-AS1 GTEx
HGNC ID HGNC:41194 ENTREZGENE
Human Proteome Map PPP1R35-AS1 Human Proteome Map
NCBI Gene PPP1R35-AS1 ENTREZGENE
RNAcentral URS00026A253A RNACentral