LINC02756 (long intergenic non-protein coding RNA 2756) - Rat Genome Database

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Gene: LINC02756 (long intergenic non-protein coding RNA 2756) Homo sapiens
Analyze
Symbol: LINC02756
Name: long intergenic non-protein coding RNA 2756
RGD ID: 14694902
HGNC Page HGNC:54276
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381191,794,322 - 91,872,486 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1191,794,319 - 91,872,086 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map11q14.3NCBI
CHM1_11191,411,166 - 91,489,325 (+)NCBICHM1_1
T2T-CHM13v2.01191,717,128 - 91,795,269 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q14.3-22.3(chr11:91086659-109595582)x1 copy number loss See cases [RCV000138038] Chr11:91086659..109595582 [GRCh38]
Chr11:90819827..109466308 [GRCh37]
Chr11:90459475..108971518 [NCBI36]
Chr11:11q14.3-22.3		 pathogenic
GRCh38/hg38 11q13.5-22.1(chr11:75941754-98357960)x1 copy number loss See cases [RCV000133838] Chr11:75941754..98357960 [GRCh38]
Chr11:75652798..98228688 [GRCh37]
Chr11:75330446..97733898 [NCBI36]
Chr11:11q13.5-22.1		 pathogenic
GRCh38/hg38 11q14.1-22.3(chr11:78232836-106779420)x1 copy number loss See cases [RCV000052710] Chr11:78232836..106779420 [GRCh38]
Chr11:77943882..106650146 [GRCh37]
Chr11:77621530..106155356 [NCBI36]
Chr11:11q14.1-22.3		 pathogenic
GRCh38/hg38 11q14.1-22.2(chr11:85242847-102920097)x1 copy number loss See cases [RCV000052711] Chr11:85242847..102920097 [GRCh38]
Chr11:84953891..102738968 [GRCh37]
Chr11:84631539..102296037 [NCBI36]
Chr11:11q14.1-22.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:238
Count of miRNA genes:196
Interacting mature miRNAs:198
Transcripts:ENST00000525832, ENST00000577699, ENST00000581290
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 147
Low 2 2 1 2 222 3 1
Below cutoff 75 46 42 12 36 9 75 31 51 14 48 49 3 25 46

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_187308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_187309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_187310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_187311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_187312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_187313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_187314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_187315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_947889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AP003028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP003055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP003177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000525832
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1191,794,358 - 91,812,294 (+)Ensembl
RefSeq Acc Id: ENST00000577699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1191,794,328 - 91,800,927 (+)Ensembl
RefSeq Acc Id: ENST00000581290
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1191,795,307 - 91,803,492 (+)Ensembl
RefSeq Acc Id: ENST00000652881
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1191,794,349 - 91,801,006 (+)Ensembl
RefSeq Acc Id: ENST00000655162
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1191,794,319 - 91,812,280 (+)Ensembl
RefSeq Acc Id: ENST00000661431
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1191,794,319 - 91,812,299 (+)Ensembl
RefSeq Acc Id: ENST00000669697
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1191,794,349 - 91,812,291 (+)Ensembl
RefSeq Acc Id: ENST00000671523
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1191,794,324 - 91,872,086 (+)Ensembl
RefSeq Acc Id: NR_187308
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381191,794,322 - 91,872,486 (+)NCBI
T2T-CHM13v2.01191,717,128 - 91,795,269 (+)NCBI
RefSeq Acc Id: NR_187309
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381191,794,322 - 91,872,486 (+)NCBI
T2T-CHM13v2.01191,717,128 - 91,795,269 (+)NCBI
RefSeq Acc Id: NR_187310
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381191,794,322 - 91,872,486 (+)NCBI
T2T-CHM13v2.01191,717,128 - 91,795,269 (+)NCBI
RefSeq Acc Id: NR_187311
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381191,794,322 - 91,872,486 (+)NCBI
T2T-CHM13v2.01191,717,128 - 91,795,269 (+)NCBI
RefSeq Acc Id: NR_187312
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381191,794,322 - 91,872,486 (+)NCBI
T2T-CHM13v2.01191,717,128 - 91,795,269 (+)NCBI
RefSeq Acc Id: NR_187313
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381191,794,322 - 91,812,301 (+)NCBI
T2T-CHM13v2.01191,717,128 - 91,735,104 (+)NCBI
RefSeq Acc Id: NR_187314
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381191,794,322 - 91,812,301 (+)NCBI
T2T-CHM13v2.01191,717,128 - 91,735,104 (+)NCBI
RefSeq Acc Id: NR_187315
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381191,794,322 - 91,800,776 (+)NCBI
T2T-CHM13v2.01191,717,128 - 91,723,582 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LINC02756 COSMIC
Ensembl Genes ENSG00000255332 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000577699 ENTREZGENE
  ENST00000661431 ENTREZGENE
  ENST00000669697 ENTREZGENE
GTEx ENSG00000255332 GTEx
HGNC ID HGNC:54276 ENTREZGENE
Human Proteome Map LINC02756 Human Proteome Map
NCBI Gene LINC02756 ENTREZGENE
RNAcentral URS00026A1B27 RNACentral
  URS00026A1B8C RNACentral
  URS00026A1BA9 RNACentral
  URS00026A1C95 RNACentral
  URS00026A1CA8 RNACentral
  URS00026A23FC RNACentral
  URS00026A25C8 RNACentral
  URS00026A287A RNACentral