LINC02737 (long intergenic non-protein coding RNA 2737) - Rat Genome Database

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Gene: LINC02737 (long intergenic non-protein coding RNA 2737) Homo sapiens
Analyze
Symbol: LINC02737
Name: long intergenic non-protein coding RNA 2737
RGD ID: 14694875
HGNC Page HGNC:54254
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381196,508,425 - 96,514,750 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1196,508,425 - 96,514,748 (+)EnsemblGRCh38hg38GRCh38
GRCh371196,241,589 - 96,247,914 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q21NCBI
CHM1_11196,124,610 - 96,130,935 (+)NCBICHM1_1
T2T-CHM13v2.01196,514,078 - 96,520,403 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q14.1-22.3(chr11:78232836-106779420)x1 copy number loss See cases [RCV000052710] Chr11:78232836..106779420 [GRCh38]
Chr11:77943882..106650146 [GRCh37]
Chr11:77621530..106155356 [NCBI36]
Chr11:11q14.1-22.3		 pathogenic
GRCh38/hg38 11q14.1-22.2(chr11:85242847-102920097)x1 copy number loss See cases [RCV000052711] Chr11:85242847..102920097 [GRCh38]
Chr11:84953891..102738968 [GRCh37]
Chr11:84631539..102296037 [NCBI36]
Chr11:11q14.1-22.2		 pathogenic
GRCh38/hg38 11q13.5-22.1(chr11:75941754-98357960)x1 copy number loss See cases [RCV000133838] Chr11:75941754..98357960 [GRCh38]
Chr11:75652798..98228688 [GRCh37]
Chr11:75330446..97733898 [NCBI36]
Chr11:11q13.5-22.1		 pathogenic
NC_000011.10:g.96458840_96510730dup duplication Normal pregnancy [RCV000161645] Chr11:96458840..96510730 [GRCh38]
Chr11:96192004..96243894 [GRCh37]
Chr11:11q21		 not provided
GRCh38/hg38 11q14.3-22.3(chr11:91086659-109595582)x1 copy number loss See cases [RCV000138038] Chr11:91086659..109595582 [GRCh38]
Chr11:90819827..109466308 [GRCh37]
Chr11:90459475..108971518 [NCBI36]
Chr11:11q14.3-22.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:127
Interacting mature miRNAs:130
Transcripts:ENST00000543403
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 66
Low 4 2 1 1 1 2 3 300 3
Below cutoff 32 20 24 9 21 7 51 20 238 10 34 14 3 13 26

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000543403
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1196,508,425 - 96,514,748 (+)Ensembl
RefSeq Acc Id: NR_135097
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381196,508,425 - 96,514,750 (+)NCBI
T2T-CHM13v2.01196,514,078 - 96,520,403 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC LINC02737 COSMIC
Ensembl Genes ENSG00000256684 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000543403 ENTREZGENE
GTEx ENSG00000256684 GTEx
HGNC ID HGNC:54254 ENTREZGENE
Human Proteome Map LINC02737 Human Proteome Map
NCBI Gene LINC02737 ENTREZGENE
RNAcentral URS0000A76835 RNACentral