LINC02719 (long intergenic non-protein coding RNA 2719) - Rat Genome Database

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Pathways
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Gene: LINC02719 (long intergenic non-protein coding RNA 2719) Homo sapiens
Analyze
Symbol: LINC02719
Name: long intergenic non-protein coding RNA 2719
RGD ID: 14694869
HGNC Page HGNC:54236
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811106,112,459 - 106,132,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11106,112,459 - 106,132,116 (-)EnsemblGRCh38hg38GRCh38
GRCh3711105,983,186 - 106,002,843 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q22.3NCBI
CHM1_111105,866,152 - 105,885,810 (-)NCBICHM1_1
T2T-CHM13v2.011106,117,069 - 106,136,729 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LINC02719
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11q14.3-22.3(chr11:91086659-109595582)x1 copy number loss See cases [RCV000138038] Chr11:91086659..109595582 [GRCh38]
Chr11:90819827..109466308 [GRCh37]
Chr11:90459475..108971518 [NCBI36]
Chr11:11q14.3-22.3		 pathogenic
GRCh38/hg38 11q22.3(chr11:105022700-106359486)x1 copy number loss See cases [RCV000052714] Chr11:105022700..106359486 [GRCh38]
Chr11:104893427..106230213 [GRCh37]
Chr11:104398637..105735423 [NCBI36]
Chr11:11q22.3		 pathogenic
GRCh38/hg38 11q22.1-25(chr11:100348599-135040246)x3 copy number gain See cases [RCV000053638] Chr11:100348599..135040246 [GRCh38]
Chr11:100219331..134910140 [GRCh37]
Chr11:99724541..134415350 [NCBI36]
Chr11:11q22.1-25		 pathogenic
GRCh38/hg38 11q22.3(chr11:104142626-107019997)x3 copy number gain See cases [RCV000053639] Chr11:104142626..107019997 [GRCh38]
Chr11:104013354..106890723 [GRCh37]
Chr11:103518564..106395933 [NCBI36]
Chr11:11q22.3		 pathogenic
GRCh38/hg38 11q14.1-22.3(chr11:78232836-106779420)x1 copy number loss See cases [RCV000052710] Chr11:78232836..106779420 [GRCh38]
Chr11:77943882..106650146 [GRCh37]
Chr11:77621530..106155356 [NCBI36]
Chr11:11q14.1-22.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:108
Interacting mature miRNAs:109
Transcripts:ENST00000524966
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 12
Low 4 319 3
Below cutoff 39 29 27 7 27 6 75 49 78 10 61 34 1 21 49

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000524966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11106,112,459 - 106,132,116 (-)Ensembl
RefSeq Acc Id: NR_135099
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811106,112,459 - 106,132,116 (-)NCBI
T2T-CHM13v2.011106,117,069 - 106,136,729 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC LINC02719 COSMIC
Ensembl Genes ENSG00000254580 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000524966 ENTREZGENE
GTEx ENSG00000254580 GTEx
HGNC ID HGNC:54236 ENTREZGENE
Human Proteome Map LINC02719 Human Proteome Map
NCBI Gene LINC02719 ENTREZGENE
RNAcentral URS00003C0F8D RNACentral