RASSF10-DT (RASSF10 divergent transcript) - Rat Genome Database

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Gene: RASSF10-DT (RASSF10 divergent transcript) Homo sapiens
Analyze
Symbol: RASSF10-DT
Name: RASSF10 divergent transcript
RGD ID: 14401949
HGNC Page HGNC:54255
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LINC02738
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381112,991,501 - 13,009,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1113,001,090 - 13,009,159 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map11p15.3NCBI
CHM1_11113,017,516 - 13,029,689 (-)NCBICHM1_1
T2T-CHM13v2.01113,084,019 - 13,101,693 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in RASSF10-DT
1 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 11p15.4-15.2(chr11:9989516-16825806)x1 copy number loss See cases [RCV000136773] Chr11:9989516..16825806 [GRCh38]
Chr11:10011063..16847353 [GRCh37]
Chr11:9967639..16803929 [NCBI36]
Chr11:11p15.4-15.2
pathogenic
GRCh38/hg38 11p15.5-15.1(chr11:446754-18904742)x3 copy number gain See cases [RCV000133997] Chr11:446754..18904742 [GRCh38]
Chr11:446754..18926289 [GRCh37]
Chr11:436754..18882865 [NCBI36]
Chr11:11p15.5-15.1
pathogenic
GRCh38/hg38 11p15.5-13(chr11:202758-31726224)x3 copy number gain See cases [RCV000053613] Chr11:202758..31726224 [GRCh38]
Chr11:202758..31747772 [GRCh37]
Chr11:192758..31704348 [NCBI36]
Chr11:11p15.5-13
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:174
Interacting mature miRNAs:177
Transcripts:ENST00000533002
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 4 1 2 27 10 1
Low 311 8 70 173 47 25 1344 5 303 255 465 315 158 16 645 2
Below cutoff 648 383 484 43 152 32 628 359 1796 104 453 640 14 1 301 338 1

Sequence


RefSeq Acc Id: ENST00000533002
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1113,001,090 - 13,009,159 (-)Ensembl
RefSeq Acc Id: NR_187417
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381112,991,501 - 13,009,116 (-)NCBI
T2T-CHM13v2.01113,084,019 - 13,101,693 (-)NCBI
RefSeq Acc Id: NR_187418
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381112,991,501 - 13,009,116 (-)NCBI
T2T-CHM13v2.01113,084,019 - 13,101,693 (-)NCBI
RefSeq Acc Id: NR_187419
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381112,991,501 - 13,009,116 (-)NCBI
T2T-CHM13v2.01113,084,019 - 13,101,693 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC RASSF10-DT COSMIC
Ensembl Genes ENSG00000254670 Ensembl
GTEx ENSG00000254670 GTEx
HGNC ID HGNC:54255 ENTREZGENE
Human Proteome Map RASSF10-DT Human Proteome Map
NCBI Gene RASSF10-DT ENTREZGENE
RNAcentral URS00026A244B RNACentral
  URS00026A2635 RNACentral
  URS00026A2846 RNACentral