Gene: RASSF10-DT (RASSF10 divergent transcript) Homo sapiens |
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Analyze |
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Symbol: |
RASSF10-DT |
Name: |
RASSF10 divergent transcript |
RGD ID: |
14401949 |
HGNC Page |
HGNC:54255 |
Description: |
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Type: |
ncrna (Ensembl: lncRNA)
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RefSeq Status: |
VALIDATED |
Previously known as: |
LINC02738 |
Allele / Splice: |
See ClinVar data |
Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 11 | 12,991,501 - 13,009,116 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 11 | 13,001,090 - 13,009,159 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | Cytogenetic Map | 11 | p15.3 | NCBI | | | | | CHM1_1 | 11 | 13,017,516 - 13,029,689 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 11 | 13,084,019 - 13,101,693 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: | 177 | Count of miRNA genes: | 174 | Interacting mature miRNAs: | 177 | Transcripts: | ENST00000533002 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
visual system |
adipose tissue |
appendage |
entire extraembryonic component |
pharyngeal arch |
High |
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Medium |
4
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1
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2
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27
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10
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1
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Low |
311
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8
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70
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173
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47
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25
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1344
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5
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303
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255
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465
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315
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158
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16
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645
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2
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Below cutoff |
648
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383
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484
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43
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152
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32
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628
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359
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1796
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104
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453
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640
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14
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1
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301
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338
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1
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Sequence
RefSeq Acc Id: |
ENST00000533002 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 11 | 13,001,090 - 13,009,159 (-) | Ensembl |
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RefSeq Acc Id: |
NR_187417 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38 | 11 | 12,991,501 - 13,009,116 (-) | NCBI | T2T-CHM13v2.0 | 11 | 13,084,019 - 13,101,693 (-) | NCBI |
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RefSeq Acc Id: |
NR_187418 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38 | 11 | 12,991,501 - 13,009,116 (-) | NCBI | T2T-CHM13v2.0 | 11 | 13,084,019 - 13,101,693 (-) | NCBI |
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RefSeq Acc Id: |
NR_187419 |
RefSeq Status: |
VALIDATED |
Type: |
NON-CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38 | 11 | 12,991,501 - 13,009,116 (-) | NCBI | T2T-CHM13v2.0 | 11 | 13,084,019 - 13,101,693 (-) | NCBI |
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Additional Information
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