CT75 (cancer/testis associated transcript 75) - Rat Genome Database

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Gene: CT75 (cancer/testis associated transcript 75) Homo sapiens
Analyze
Symbol: CT75
Name: cancer/testis associated transcript 75
RGD ID: 14394461
HGNC Page HGNC:37174
Description: INTERACTS WITH lipopolysaccharide; S-(1,2-dichlorovinyl)-L-cysteine
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382222,318,471 - 222,357,910 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,318,471 - 222,352,989 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl2222,318,275 - 222,321,512 (+)EnsemblGRCh38hg38GRCh38
GRCh372223,183,190 - 223,222,629 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q36.1NCBI
HuRef2215,035,287 - 215,037,855 (+)NCBIHuRef
CHM1_12223,187,753 - 223,192,874 (+)NCBICHM1_1
T2T-CHM13v2.02222,803,593 - 222,843,083 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12477932   PMID:21791470   PMID:32914196  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q31.3-36.2(chr2:180513793-224302848)x3 copy number gain See cases [RCV000139446] Chr2:180513793..224302848 [GRCh38]
Chr2:181378520..225167565 [GRCh37]
Chr2:181086765..224875809 [NCBI36]
Chr2:2q31.3-36.2		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:190310736-241892770)x3 copy number gain See cases [RCV000052959] Chr2:190310736..241892770 [GRCh38]
Chr2:191175462..242834921 [GRCh37]
Chr2:190883707..242483594 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
GRCh38/hg38 2q36.1-36.2(chr2:221663502-224426183)x1 copy number loss See cases [RCV000135355] Chr2:221663502..224426183 [GRCh38]
Chr2:222528222..225290900 [GRCh37]
Chr2:222236466..224999144 [NCBI36]
Chr2:2q36.1-36.2		 pathogenic
GRCh38/hg38 2q32.3-37.3(chr2:194898783-236473913)x3 copy number gain See cases [RCV000051119] Chr2:194898783..236473913 [GRCh38]
Chr2:195763507..237382556 [GRCh37]
Chr2:195471752..237047295 [NCBI36]
Chr2:2q32.3-37.3		 pathogenic
GRCh38/hg38 2q35-36.3(chr2:219081620-225430308)x1 copy number loss See cases [RCV000052634] Chr2:219081620..225430308 [GRCh38]
Chr2:219946342..226295024 [GRCh37]
Chr2:219654586..226003268 [NCBI36]
Chr2:2q35-36.3		 pathogenic
GRCh38/hg38 2q34-37.3(chr2:210579676-242126245)x3 copy number gain See cases [RCV000135934] Chr2:210579676..242126245 [GRCh38]
Chr2:211444400..243059659 [GRCh37]
Chr2:211152645..242717069 [NCBI36]
Chr2:2q34-37.3		 pathogenic
GRCh38/hg38 2q35-37.3(chr2:218101759-242126245)x3 copy number gain See cases [RCV000143216] Chr2:218101759..242126245 [GRCh38]
Chr2:218966482..243059659 [GRCh37]
Chr2:218674727..242717069 [NCBI36]
Chr2:2q35-37.3		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:189436149-241841232)x3 copy number gain See cases [RCV000142307] Chr2:189436149..241841232 [GRCh38]
Chr2:190300875..242783384 [GRCh37]
Chr2:190009120..242432057 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:188818195-242065208)x3 copy number gain See cases [RCV000052958] Chr2:188818195..242065208 [GRCh38]
Chr2:189682921..243007359 [GRCh37]
Chr2:189391166..242656032 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:999
Count of miRNA genes:404
Interacting mature miRNAs:430
Transcripts:ENST00000424010, ENST00000429475, ENST00000439237, ENST00000446532, ENST00000542880, ENST00000555502, ENST00000587192, ENST00000589724, ENST00000590427
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 1 1 1 4 1 1 5 13 382 11 1
Low 1574 703 1235 70 604 17 956 1267 2868 136 502 1179 54 254 520
Below cutoff 781 1878 284 358 1108 253 2912 884 635 249 495 372 113 864 1893 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000424010
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,320,674 - 222,321,659 (+)Ensembl
RefSeq Acc Id: ENST00000429475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,319,289 - 222,321,722 (+)Ensembl
RefSeq Acc Id: ENST00000439237
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,321,106 - 222,321,538 (+)Ensembl
RefSeq Acc Id: ENST00000446532
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,320,863 - 222,321,722 (+)Ensembl
RefSeq Acc Id: ENST00000555502
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,318,471 - 222,321,724 (+)Ensembl
RefSeq Acc Id: ENST00000587192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,318,275 - 222,321,512 (+)Ensembl
RefSeq Acc Id: ENST00000589724
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,319,298 - 222,352,989 (+)Ensembl
RefSeq Acc Id: ENST00000590427
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,318,701 - 222,342,541 (+)Ensembl
RefSeq Acc Id: ENST00000687966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,320,322 - 222,321,656 (+)Ensembl
RefSeq Acc Id: ENST00000691960
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2222,320,322 - 222,321,656 (+)Ensembl
RefSeq Acc Id: NR_136638
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382222,318,471 - 222,321,722 (+)NCBI
T2T-CHM13v2.02222,803,593 - 222,806,845 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136639
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382222,320,661 - 222,321,722 (+)NCBI
T2T-CHM13v2.02222,805,784 - 222,806,845 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136640
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382222,320,661 - 222,321,722 (+)NCBI
T2T-CHM13v2.02222,805,784 - 222,806,845 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136641
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382222,320,661 - 222,321,722 (+)NCBI
T2T-CHM13v2.02222,805,784 - 222,806,845 (+)NCBI
Sequence:
RefSeq Acc Id: NR_136642
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382222,318,471 - 222,357,910 (+)NCBI
T2T-CHM13v2.02222,803,593 - 222,843,083 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAH08048 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC CT75 COSMIC
Ensembl Genes ENSG00000237732 Ensembl
  ENSG00000291155 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000424010 ENTREZGENE
  ENST00000555502 ENTREZGENE
GTEx ENSG00000237732 GTEx
  ENSG00000291155 GTEx
HGNC ID HGNC:37174 ENTREZGENE
Human Proteome Map CT75 Human Proteome Map
NCBI Gene CT75 ENTREZGENE
RNAcentral URS0000A76443 RNACentral
  URS0000A7644B RNACentral
  URS0000A765D7 RNACentral
  URS0000A76E61 RNACentral
  URS0000A77339 RNACentral