Type Exception Report
Message An exception occurred processing [WEB-INF/jsp/report/gene/main.jsp] at line [45]
Description The server encountered an unexpected condition that prevented it from fulfilling the request.
Exception
org.apache.jasper.JasperException: An exception occurred processing [WEB-INF/jsp/report/gene/main.jsp] at line [45] 42: if( !(geneSource.equals("NCBI") || geneSource.equals("Ensembl")) ) { 43: geneSource = "NCBI"; 44: } 45: edu.mcw.rgd.datamodel.Map refMap = mapDAO.getPrimaryRefAssembly(obj.getSpeciesTypeKey(), geneSource); 46: List mapDataList = mapDAO.getMapData(obj.getRgdId(), refMap.getKey()); 47: MapData md = new MapData(); 48: if (mapDataList.size() > 0) { Stacktrace: org.apache.jasper.servlet.JspServletWrapper.handleJspException(JspServletWrapper.java:599) org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:478) org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:380) org.apache.jasper.servlet.JspServlet.service(JspServlet.java:328) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) org.springframework.web.servlet.view.InternalResourceView.renderMergedOutputModel(InternalResourceView.java:171) org.springframework.web.servlet.view.AbstractView.render(AbstractView.java:314) org.springframework.web.servlet.DispatcherServlet.render(DispatcherServlet.java:1415) org.springframework.web.servlet.DispatcherServlet.processDispatchResult(DispatcherServlet.java:1159) org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1098) org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:974) org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1011) org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:903) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:564) org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:885) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) edu.mcw.rgd.web.ChinchillaFilter.doFilter(ChinchillaFilter.java:24)
Root Cause
jakarta.servlet.ServletException: edu.mcw.rgd.dao.impl.MapDAO$MapDAOException: No primary reference assembly found for species type key 11 and source NCBI org.apache.jasper.runtime.PageContextImpl.handlePageException(PageContextImpl.java:666) org.apache.jsp.WEB_002dINF.jsp.report.gene.main_jsp._jspService(main_jsp.java:8363) org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:456) org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:380) org.apache.jasper.servlet.JspServlet.service(JspServlet.java:328) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) org.springframework.web.servlet.view.InternalResourceView.renderMergedOutputModel(InternalResourceView.java:171) org.springframework.web.servlet.view.AbstractView.render(AbstractView.java:314) org.springframework.web.servlet.DispatcherServlet.render(DispatcherServlet.java:1415) org.springframework.web.servlet.DispatcherServlet.processDispatchResult(DispatcherServlet.java:1159) org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1098) org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:974) org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1011) org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:903) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:564) org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:885) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) edu.mcw.rgd.web.ChinchillaFilter.doFilter(ChinchillaFilter.java:24)
Root Cause
edu.mcw.rgd.dao.impl.MapDAO$MapDAOException: No primary reference assembly found for species type key 11 and source NCBI edu.mcw.rgd.dao.impl.MapDAO.getPrimaryRefAssembly(MapDAO.java:185) org.apache.jsp.WEB_002dINF.jsp.report.gene.main_jsp._jspService(main_jsp.java:518) org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:456) org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:380) org.apache.jasper.servlet.JspServlet.service(JspServlet.java:328) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) org.springframework.web.servlet.view.InternalResourceView.renderMergedOutputModel(InternalResourceView.java:171) org.springframework.web.servlet.view.AbstractView.render(AbstractView.java:314) org.springframework.web.servlet.DispatcherServlet.render(DispatcherServlet.java:1415) org.springframework.web.servlet.DispatcherServlet.processDispatchResult(DispatcherServlet.java:1159) org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:1098) org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:974) org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:1011) org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:903) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:564) org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:885) jakarta.servlet.http.HttpServlet.service(HttpServlet.java:658) org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:51) edu.mcw.rgd.web.ChinchillaFilter.doFilter(ChinchillaFilter.java:24)
Note The full stack trace of the root cause is available in the server logs.