LOC100622090 (olfactory receptor 8S1-like)

Gene: LOC100622090 (olfactory receptor 8S1-like) Sus scrofa

Analyze

Symbol:

LOC100622090

Name:

olfactory receptor 8S1-like

RGD ID:

14298225

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); odorant binding (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	5	79,206,846 - 79,209,505 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	82,547,275 - 82,552,716 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

detection of chemical stimulus involved in sensory perception of smell (IEA)

G protein-coupled receptor signaling pathway (IEA)

sensory perception of smell (IEA)

signal transduction (IBA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

odorant binding (IEA)

olfactory receptor activity (IBA,IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC100622090
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	5	79,206,846 - 79,209,505 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	82,547,275 - 82,552,716 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OR5BS1P
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	48,559,882 - 48,562,956 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	48,559,882 - 48,562,956 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	48,953,665 - 48,956,739 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	47,239,832 - 47,240,964 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	47,749,661 - 47,750,593 (+)	NCBI		Celera
Cytogenetic Map	12	q13.11	NCBI
HuRef	12	45,987,751 - 45,988,683 (+)	NCBI		HuRef
CHM1_1	12	48,919,482 - 48,920,414 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	48,521,894 - 48,524,969 (+)	NCBI		T2T-CHM13v2.0

Or5bs2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	98,367,777 - 98,376,863 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm38	15	98,471,419 - 98,471,885 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
MGSCv37	15	98,301,850 - 98,302,316 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	99,383,712 - 99,384,178 (+)	NCBI		MGSCv36	mm8
MGSCv36	15	98,299,453 - 98,299,919 (+)	NCBI		MGSCv36	mm8
Celera	15	100,622,258 - 100,622,548 (+)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	54.48	NCBI

LOC100988961
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	45,619,130 - 45,622,978 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	45,615,891 - 45,619,739 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	40,185,010 - 40,188,680 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	41,062,278 - 41,065,333 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

OR5BS3P
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	5,904,009 - 5,906,868 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	5,904,009 - 5,906,868 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	40,351,591 - 40,354,451 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	5,957,185 - 5,957,967 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	27	5,919,990 - 5,920,772 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	5,908,654 - 5,911,518 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	40,743,240 - 40,744,022 (+)	NCBI		UU_Cfam_GSD_1.0

Variants

Variants in LOC100622090
126 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021091257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021091257 ⟹ XP_020946916

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	79,206,846 - 79,209,505 (+)	NCBI

Sequence:

show sequence

ATGGAAGGTGGCAACACAACCACGGTCACCGAATTTGTTCTCCTAGGACTATCTAACAACCCTC
ACATCCAGGCAGTACTATTTGTAACATTCCTGGTGGCTTACCTCCTCATCCTCACAGAGAACCT
GCTGATGCTGCTGGTGATCAGTACTGATTCCCACCTCCACAGCCCCATGTACTTCTTCCTCAGC
CACCTCTCCTTCCTGGATGCCTTCTATTCCTCCATCATTGTCCCTAAGCTGCTAGAGCACCTTC
TTTCCAAGTGGAAGACTATATCCCCCCTTGAGTGTTTCGCCCAGATCTCCTTGGTCATATTTTC
TGGAGCCACTGAAACTTGCCTCCTTTCAGTCATGGCCTATGACCGGTTCCAGGCTGTGTGCCAC
CCACTGTTGTATGCGGTGGCTATGAACAGGAAGGTGTGCACTGGCCTGGTGGGAGCATCCTGGG
CCATAGGAATGGGGACGGGCTTAGTTAACACCATCCTCCTGGCTCAGCATCACTTCTGTGGCCC
CAACCTTGTCCGGAGCTTTGCCTGTGAGCTTCCCCCAGTGCTCCTGCTGGCCTGCTCTGACCCC
TCTGTTAGCATTGCCTCCATCCTAACAAGCACAGCTGTTCTCGGCATTGTCACCCTTGTTCTCC
TGCTGGGTTCCTACACCCGTATCGTCATGACAGCCTTAAGGATCAACTCTGCCACAGGTCGGAG
CAAGATCTTCTCTACCTGCTCGTCTCATTTCCTTGTGGTCACCATCTTCTATGCTTCAGGAGTG
TCCAGGTACGTGACTTCAGCTTCTGGCTCAGCCCTGGAGCAAGTGCTGTCTGTGCAGTACAGTG
TGGTGACGCCACTGCTTAACCCCCTCATCTACAGCCTGAAGAACCAGGAGGTGAAAGCAGCTCT
GAGGAGGATGCTGACCAAGAAGTCTAGACTTAGCTCCTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020946916	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000024603
	ENSSSCP00000024603.3
	ENSSSCP00005045265.1
	ENSSSCP00070012616.1

RefSeq Acc Id:

XP_020946916 ⟸ XM_021091257

- UniProtKB:

I3LKI9 (UniProtKB/TrEMBL), A0A8D0TRL4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEGGNTTTVTEFVLLGLSNNPHIQAVLFVTFLVAYLLILTENLLMLLVISTDSHLHSPMYFFLS
HLSFLDAFYSSIIVPKLLEHLLSKWKTISPLECFAQISLVIFSGATETCLLSVMAYDRFQAVCH
PLLYAVAMNRKVCTGLVGASWAIGMGTGLVNTILLAQHHFCGPNLVRSFACELPPVLLLACSDP
SVSIASILTSTAVLGIVTLVLLLGSYTRIVMTALRINSATGRSKIFSTCSSHFLVVTIFYASGV
SRYVTSASGSALEQVLSVQYSVVTPLLNPLIYSLKNQEVKAALRRMLTKKSRLSS

hide sequence

Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000038078	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005044910	UniProtKB/TrEMBL
	ENSSSCG00070007915	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000029048	ENTREZGENE
	ENSSSCT00000029048.3	UniProtKB/TrEMBL
	ENSSSCT00005072396.1	UniProtKB/TrEMBL
	ENSSSCT00070015260.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn	UniProtKB/TrEMBL
	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Olfact_rcpt	UniProtKB/TrEMBL
NCBI Gene	LOC100622090	ENTREZGENE
PANTHER	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
	OLFACTORY RECEPTOR	UniProtKB/TrEMBL
Pfam	7tm_4	UniProtKB/TrEMBL
PRINTS	GPCRRHODOPSN	UniProtKB/TrEMBL
	OLFACTORYR	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_1	UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A4X1TD01_PIG	UniProtKB/TrEMBL
	A0A8D0TRL4	ENTREZGENE, UniProtKB/TrEMBL
	I3LKI9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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