MYL6 (myosin light chain 6) - Rat Genome Database

Name: MYL6
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: MYL6 (myosin light chain 6) Sus scrofa

Analyze

Symbol:

MYL6

Name:

myosin light chain 6

RGD ID:

14295388

Description:

ENCODES a protein that exhibits microfilament motor activity; structural constituent of muscle; INVOLVED IN muscle contraction (inferred); muscle filament sliding (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN unconventional myosin complex (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

17 kDa myosin light chain; LC17; MLC-3; myosin light chain 3; myosin light chain A3; myosin light chain alkali 3; myosin light polypeptide 6; myosin, light chain 6, alkali, smooth muscle and non-muscle; non-muscle myosin light chain; smooth muscle and nonmuscle myosin light chain alkali 6

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MYL6 (myosin light chain 6)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OrthoDB, Treefam
Mus musculus (house mouse):	Myl6 (myosin, light polypeptide 6, alkali, smooth muscle and non-muscle)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Myl6 (myosin light chain 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Myl6 (myosin light chain 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MYL6 (myosin light chain 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MYL6 (myosin light chain 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Myl6 (myosin light chain 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MYL6 (myosin light chain 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Myl6 (myosin light chain 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MYL6B (myosin light chain 6B)	HGNC	OMA, OrthoDB, Panther

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,559,029 - 21,562,413 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	21,559,226 - 21,562,418 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	23,251,782 - 23,254,969 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

muscle contraction (IC)

muscle filament sliding (IC)

Cellular Component

brush border (IEA)

myosin complex (IEA)

myosin II complex (IBA,IEA)

unconventional myosin complex (ISO)

Molecular Function

calcium ion binding (IEA)

microfilament motor activity (IC,IDA)

protein binding (ISO)

structural constituent of muscle (IBA,IDA,IEA)

References

Additional References at PubMed

PMID:1500421	PMID:14681463	PMID:16953301	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

MYL6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	21,559,029 - 21,562,413 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	21,559,226 - 21,562,418 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	23,251,782 - 23,254,969 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MYL6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	56,158,359 - 56,161,579 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	56,158,346 - 56,163,496 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	56,552,143 - 56,555,363 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	54,838,367 - 54,841,633 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	54,838,412 - 54,841,625	NCBI
Celera	12	56,204,244 - 56,207,510 (+)	NCBI		Celera
Cytogenetic Map	12	q13.2	NCBI
HuRef	12	53,591,104 - 53,594,425 (+)	NCBI		HuRef
CHM1_1	12	56,519,428 - 56,522,749 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	56,125,971 - 56,129,191 (+)	NCBI		T2T-CHM13v2.0

Myl6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	128,326,728 - 128,329,755 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	128,326,729 - 128,330,014 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	128,490,859 - 128,493,886 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	128,490,860 - 128,494,145 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	127,927,917 - 127,930,881 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	127,893,810 - 127,896,774 (-)	NCBI		MGSCv36	mm8
Celera	10	130,882,814 - 130,885,778 (-)	NCBI		Celera
Cytogenetic Map	10	D3	NCBI
cM Map	10	76.75	NCBI

Myl6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	1,495,301 - 1,498,512 (-)	NCBI		GRCr8
mRatBN7.2	7	910,764 - 914,062 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	910,774 - 933,791 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	7	3,672,717 - 3,675,759 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	5,548,698 - 5,551,740 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	5,846,357 - 5,849,400 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	2,906,137 - 2,909,193 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	2,906,137 - 2,909,179 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	2,880,878 - 2,882,625 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	1,772,621 - 1,775,663 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	7	783,878 - 786,920 (-)	NCBI		Celera
Cytogenetic Map	7	q11	NCBI

Myl6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	3,760,695 - 3,763,652 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955458	3,760,695 - 3,763,652 (+)	NCBI	ChiLan1.0	ChiLan1.0

MYL6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	38,170,858 - 38,174,379 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	38,167,626 - 38,171,068 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	32,754,146 - 32,757,436 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	33,004,923 - 33,008,329 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	33,004,181 - 33,008,329 (-)	Ensembl	panpan1.1		panPan2

MYL6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	476,944 - 480,122 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	476,989 - 480,827 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	540,437 - 543,631 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	485,590 - 488,789 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	481,463 - 489,494 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	463,051 - 466,242 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	706,139 - 709,321 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	830,176 - 833,371 (+)	NCBI		UU_Cfam_GSD_1.0

Myl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	58,299,887 - 58,303,122 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936646	567,209 - 570,348 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936646	567,112 - 570,348 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYL6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	52,099,075 - 52,102,205 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	193,882,099 - 193,885,358 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Myl6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624802	11,847,061 - 11,850,084 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624802	11,847,061 - 11,850,187 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MYL6
17 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001163997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005655587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005655589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021091112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF044259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK230643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK233447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK238248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK240054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK240358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK240360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK343746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK343941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391962	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK392800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK399933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU498845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU694915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01032597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000000407 ⟹ ENSSSCP00000000401

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	21,554,351 - 21,558,992 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000000408 ⟹ ENSSSCP00000000402

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	21,559,029 - 21,561,553 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000000409 ⟹ ENSSSCP00000000403

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	21,559,293 - 21,562,413 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000000419 ⟹ ENSSSCP00000000413

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	21,556,107 - 21,558,995 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000077853 ⟹ ENSSSCP00000067934

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	21,554,351 - 21,558,758 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000080614 ⟹ ENSSSCP00000060333

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	21,486,312 - 21,563,425 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000085056 ⟹ ENSSSCP00000060677

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	21,559,292 - 21,561,939 (+)	Ensembl

RefSeq Acc Id:

NM_001163997 ⟹ NP_001157469

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	21,559,325 - 21,562,418 (+)	NCBI

Sequence:

show sequence

GGAAAAGGTCCCGCAGAGCCAAGCAGTCAAGATGTGTGACTTCACCGAGGACCAGACCGCAGAG
TTCAAGGAGGCCTTCCAGCTGTTTGACCGAACAGGGGATGGCAAGATCCTGTACAGCCAGTGTG
GGGACGTGATGAGGGCCCTGGGCCAGAACCCCACCAACGCCGAGGTGCTCAAGGTCCTGGGGAA
CCCCAAGAGTGATGAGATGAACGTGAAGGTGCTGGACTTCGAGCACTTCCTGCCCATGCTGCAG
ACTGTGGCCAAGAACAAGGACCAGGGCACCTACGAGGACTATGTCGAAGGCCTGCGGGTGTTCG
ACAAGGAGGGCAACGGCACCGTCATGGGTGCGGAGATCCGGCATGTTCTTGTCACACTGGGTGA
GAAGATGACAGAGGAAGAAGTAGAGATGCTGGTGGCAGGGCATGAGGACAGCAATGGTTGTATC
AACTATGAAGCGTTTGTGAGGCATATCCTGTCGGGGTGACGGGCCCCGTGGGGCGGAGCTTGTC
TGCATGGTGCTGAATGGCTGAGGACATTCCCAGTGGGAGACGGTGTGTGTAGCCCTGAAGGCCT
CCTAGACTCTCTTGTCACAGAACTTTTCCCAGCATGTCTCCCTCAGATGATGTTTGCCATCAGC
ATTTACCAAATAAACTTGTTCTCTGCCCTA

hide sequence

RefSeq Acc Id:

XM_005655587 ⟹ XP_005655644

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	21,559,226 - 21,562,418 (+)	NCBI

Sequence:

show sequence

AGACCGGGCCAGGATCCCTATTGGCTGGGTCAACGGAGGGTGACGTCATTGGGACGTACTAAGA
CTAGGGTTGGGCCGAGAACCGGAGCCATTACTGCAGGAAAAGGTCCCGCAGAGCCAAGCAGTCA
AGATGTGTGACTTCACCGAGGACCAGACCGCAGAGTTCAAGGAGGCCTTCCAGCTGTTTGACCG
AACAGGGGATGGCAAGATCCTGTACAGCCAGTGTGGGGACGTGATGAGGGCCCTGGGCCAGAAC
CCCACCAACGCCGAGGTGCTCAAGGTCCTGGGGAACCCCAAGAGTGATGAGATGAACGTGAAGG
TGCTGGACTTCGAGCACTTCCTGCCCATGCTGCAGACTGTGGCCAAGAACAAGGACCAGGGCAC
CTACGAGGACTATGTCGAAGGCCTGCGGGTGTTCGACAAGGAGGGCAACGGCACCGTCATGGGT
GCGGAGATCCGGCATGTTCTTGTCACACTGGGTGAGAAGATGACAGAGGAAGAAGTAGAGATGC
TGGTGGCAGGGCATGAGGACAGCAATGGTTGTATCAACTATGAAGGTAAGGGACAAATGGAGGC
TCTCACAAACGCAGTGGCTATCAGGGGCAGGTCAGGCACAGTGTTTGGGGCTTTCCTTGTCCCT
GGGCTTGGGCTGCACAAAATGCCAGGAGGCAAGGGGCAGGGCCTGGCCCAGCCCAGGAGTGGGA
GGCCTGGGGGGTGTGGCAGGAAAGGAAGGGCTCCTGCGGCTTGAAGGGCGGGCAAGGGGTGGGG
CGTAAAACCAATGGGTGTCTTGTTCCCTCACCGCCTGATCCCCTTCACCCCACGTCTATGTCTT
GTCTTCACCATTAATGTCTCTTCCTTCCTGCAGCGTTTGTGAGGCATATCCTGTCGGGGTGACG
GGCCCCGTGGGGCGGGTACGGCTCCTCCCAGCCCCCCCCTTCTCTAGTTGCCCTCCCCAGTGTT
TTTCTTCCTGGCCTTTGCTCTCTGGCCCCTGCCCTTCCCCTACTACCATGACTTCCTCCTAGCA
TGTCTCTGCATGGAGCTGACTGAGGAGGGGGGGTTCTTCAAAGAGGAAGGCAGCCTGGGGGTGT
GGTACCTCCTCCTCTCCTAGAATGGGCTCTGAGGTTTTGCTTCTAGGGCGCTGGCGTCTGGGAA
CTCACACCAGCCTATCCCCGTCTTGCTTCAGGGTGACCCTGTGGCCCGGGAGCATGGGCGGTTG
ACAGAGGGGGGTGGGTTGCCCGCCCCATGGTGCTGCTGCAGCCGGAGTCGCTTCCCCTTCCTTC
TGCTGGGCAGCTTGGAGGTACCCTAACCCAAAACTCTGTCTTTTCCTCCCGCCAATGGCTGACA
GTAGCTGTAGGTGTAGCTGAGAACTCTTCTGCTCTGCTGTGTTCTTGCTGCTCAGGGTCGGGTG
GGGAACTAACAGCTGGTGGGAGGGGAGCTGGAGGCCGAGAACCAGTCAGACTCAAGGTAGCGCC
TCTGCAAACTGACCCCAAGGTGGGTTGCTGTAGGCACGTTCCTCCTTAGGCTACCTTTGTGGTC
TTGCGGTCTCCTGGCCCCTGGTGAACCCCTCCCCTTGGCCCTGCTCCCTGGTTCAGCCCCCTCT
CCTTCCACAGAGCTTGTCCGCATGGTGCTGAATGGCTGAGGACATTCCCAGTGGGAGACGGTGT
GTGTAGCCCTGAAGGCCTCCTAGACTCTCTTGTCACAGAACTTTTCCCAGCATGTCTCCCTCAG
ATGATGTTTGCCATCAGCATTTACCAAATAAACTTGTTCTCTGCCCTA

hide sequence

RefSeq Acc Id:

XM_005655589 ⟹ XP_005655646

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	21,559,226 - 21,562,418 (+)	NCBI

Sequence:

show sequence

AGACCGGGCCAGGATCCCTATTGGCTGGGTCAACGGAGGGTGACGTCATTGGGACGTACTAAGA
CTAGGGTTGGGCCGAGAACCGGAGCCATTACTGCAGGAAAAGGTCCCGCAGAGCCAAGCAGTCA
AGATGTGTGACTTCACCGAGGACCAGACCGCAGAGTTCAAGGAGGCCTTCCAGCTGTTTGACCG
AACAGGGGATGGCAAGATCCTGTACAGCCAGTGTGGGGACGTGATGAGGGCCCTGGGCCAGAAC
CCCACCAACGCCGAGGTGCTCAAGGTCCTGGGGAACCCCAAGAGTGATGAGATGAACGTGAAGG
TGCTGGACTTCGAGCACTTCCTGCCCATGCTGCAGACTGTGGCCAAGAACAAGGACCAGGGCAC
CTACGAGGACTATGTCGAAGGCCTGCGGGTGTTCGACAAGGAGGGCAACGGCACCGTCATGGGT
GCGGAGATCCGGCATGTTCTTGTCACACTGGGTGAGAAGATGACAGAGGAAGAAGTAGAGATGC
TGGTGGCAGGGCATGAGGACAGCAATGGTTGTATCAACTATGAAGAGCTTGTCCGCATGGTGCT
GAATGGCTGAGGACATTCCCAGTGGGAGACGGTGTGTGTAGCCCTGAAGGCCTCCTAGACTCTC
TTGTCACAGAACTTTTCCCAGCATGTCTCCCTCAGATGATGTTTGCCATCAGCATTTACCAAAT
AAACTTGTTCTCTGCCCTA

hide sequence

RefSeq Acc Id:

XM_021091112 ⟹ XP_020946771

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	21,559,296 - 21,562,418 (+)	NCBI

Sequence:

show sequence

TTGGGCCGAGAACCGGAGCCATTACTGCAGGAAAAGGTCCCGCAGAGCCAAGCAGTCAAGATGT
GTGACTTCACCGAGGACCAGACCGCAGATCTGAGCCCCAAGCACCGGAGTTCAAGGAGGCCTTC
CAGCTGTTTGACCGAACAGGGGATGGCAAGATCCTGTACAGCCAGTGTGGGGACGTGATGAGGG
CCCTGGGCCAGAACCCCACCAACGCCGAGGTGCTCAAGGTCCTGGGGAACCCCAAGAGTGATGA
GATGAACGTGAAGGTGCTGGACTTCGAGCACTTCCTGCCCATGCTGCAGACTGTGGCCAAGAAC
AAGGACCAGGGCACCTACGAGGACTATGTCGAAGGCCTGCGGGTGTTCGACAAGGAGGGCAACG
GCACCGTCATGGGTGCGGAGATCCGGCATGTTCTTGTCACACTGGGTGAGAAGATGACAGAGGA
AGAAGTAGAGATGCTGGTGGCAGGGCATGAGGACAGCAATGGTTGTATCAACTATGAAGGTAAG
GGACAAATGGAGGCTCTCACAAACGCAGTGGCTATCAGGGGCAGGTCAGGCACAGTGTTTGGGG
CTTTCCTTGTCCCTGGGCTTGGGCTGCACAAAATGCCAGGAGGCAAGGGGCAGGGCCTGGCCCA
GCCCAGGAGTGGGAGGCCTGGGGGGTGTGGCAGGAAAGGAAGGGCTCCTGCGGCTTGAAGGGCG
GGCAAGGGGTGGGGCGTAAAACCAATGGGTGTCTTGTTCCCTCACCGCCTGATCCCCTTCACCC
CACGTCTATGTCTTGTCTTCACCATTAATGTCTCTTCCTTCCTGCAGCGTTTGTGAGGCATATC
CTGTCGGGGTGACGGGCCCCGTGGGGCGGGTACGGCTCCTCCCAGCCCCCCCCTTCTCTAGTTG
CCCTCCCCAGTGTTTTTCTTCCTGGCCTTTGCTCTCTGGCCCCTGCCCTTCCCCTACTACCATG
ACTTCCTCCTAGCATGTCTCTGCATGGAGCTGACTGAGGAGGGGGGGTTCTTCAAAGAGGAAGG
CAGCCTGGGGGTGTGGTACCTCCTCCTCTCCTAGAATGGGCTCTGAGGTTTTGCTTCTAGGGCG
CTGGCGTCTGGGAACTCACACCAGCCTATCCCCGTCTTGCTTCAGGGTGACCCTGTGGCCCGGG
AGCATGGGCGGTTGACAGAGGGGGGTGGGTTGCCCGCCCCATGGTGCTGCTGCAGCCGGAGTCG
CTTCCCCTTCCTTCTGCTGGGCAGCTTGGAGGTACCCTAACCCAAAACTCTGTCTTTTCCTCCC
GCCAATGGCTGACAGTAGCTGTAGGTGTAGCTGAGAACTCTTCTGCTCTGCTGTGTTCTTGCTG
CTCAGGGTCGGGTGGGGAACTAACAGCTGGTGGGAGGGGAGCTGGAGGCCGAGAACCAGTCAGA
CTCAAGGTAGCGCCTCTGCAAACTGACCCCAAGGTGGGTTGCTGTAGGCACGTTCCTCCTTAGG
CTACCTTTGTGGTCTTGCGGTCTCCTGGCCCCTGGTGAACCCCTCCCCTTGGCCCTGCTCCCTG
GTTCAGCCCCCTCTCCTTCCACAGAGCTTGTCCGCATGGTGCTGAATGGCTGAGGACATTCCCA
GTGGGAGACGGTGTGTGTAGCCCTGAAGGCCTCCTAGACTCTCTTGTCACAGAACTTTTCCCAG
CATGTCTCCCTCAGATGATGTTTGCCATCAGCATTTACCAAATAAACTTGTTCTCTGCCCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001157469	(Get FASTA)	NCBI Sequence Viewer
	XP_005655644	(Get FASTA)	NCBI Sequence Viewer
	XP_005655646	(Get FASTA)	NCBI Sequence Viewer
	XP_020946771	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAD02326	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000000402
	ENSSSCP00000000402.5
	ENSSSCP00000000403.4
	ENSSSCP00000060677
	ENSSSCP00000060677.2
	ENSSSCP00005007736.1
	ENSSSCP00005007832.1
	ENSSSCP00005007890.1
	ENSSSCP00015036178.1
	ENSSSCP00015036410.1
	ENSSSCP00015036621.1
	ENSSSCP00015036884.1
	ENSSSCP00015037183.1
	ENSSSCP00025026223.1
	ENSSSCP00025026341.1
	ENSSSCP00030029714.1
	ENSSSCP00030029740.1
	ENSSSCP00035007020.1
	ENSSSCP00035007023.1
	ENSSSCP00040002031.1
	ENSSSCP00040002041.1
	ENSSSCP00040002045.1
	ENSSSCP00045021919.1
	ENSSSCP00045021996.1
	ENSSSCP00045022093.1
	ENSSSCP00045022151.1
	ENSSSCP00050046126.1
	ENSSSCP00050046138.1
	ENSSSCP00050046142.1
	ENSSSCP00055010840.1
	ENSSSCP00055010997.1
	ENSSSCP00055011063.1
	ENSSSCP00060047025.1
	ENSSSCP00060047068.1
	ENSSSCP00065031893.1
	ENSSSCP00065031915.1
	ENSSSCP00065031927.1
	ENSSSCP00065031944.1
	ENSSSCP00070050926.1

RefSeq Acc Id:	XP_005655644 ⟸ XM_005655587
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D0X5A1 (UniProtKB/TrEMBL), A0A5G2QF69 (UniProtKB/TrEMBL), A0A480I0Y2 (UniProtKB/TrEMBL), A0A8D1X0X9 (UniProtKB/TrEMBL), A0A8D1CMK0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKV LDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEML VAGHEDSNGCINYEGKGQMEALTNAVAIRGRSGTVFGAFLVPGLGLHKMPGGKGQGLAQPRSGR PGGCGRKGRAPAA hide sequence

RefSeq Acc Id:	XP_005655646 ⟸ XM_005655589
- Peptide Label:	isoform X3
- UniProtKB:	A0A5S6FSE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKV LDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEML VAGHEDSNGCINYEELVRMVLNG hide sequence

RefSeq Acc Id:	XP_020946771 ⟸ XM_021091112
- Peptide Label:	isoform X2
- Sequence:	show sequence MRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKE GNGTVMGAEIRHVLVTLGEKMTEEEVEMLVAGHEDSNGCINYEGKGQMEALTNAVAIRGRSGTV FGAFLVPGLGLHKMPGGKGQGLAQPRSGRPGGCGRKGRAPAA hide sequence

RefSeq Acc Id:	NP_001157469 ⟸ NM_001163997
- UniProtKB:	P60662 (UniProtKB/Swiss-Prot), A0A5S6FSE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCDFTEDQTAEFKEAFQLFDRTGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDEMNVKV LDFEHFLPMLQTVAKNKDQGTYEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEML VAGHEDSNGCINYEAFVRHILSG hide sequence

RefSeq Acc Id:

ENSSSCP00000060677 ⟸ ENSSSCT00000085056

RefSeq Acc Id:

ENSSSCP00000060333 ⟸ ENSSSCT00000080614

RefSeq Acc Id:

ENSSSCP00000000402 ⟸ ENSSSCT00000000408

RefSeq Acc Id:

ENSSSCP00000000403 ⟸ ENSSSCT00000000409

RefSeq Acc Id:

ENSSSCP00000000413 ⟸ ENSSSCT00000000419

RefSeq Acc Id:

ENSSSCP00000000401 ⟸ ENSSSCT00000000407

RefSeq Acc Id:

ENSSSCP00000067934 ⟸ ENSSSCT00000077853

Protein Domains

EF-hand

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000039506	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005007961	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00015066226	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00025045432	UniProtKB/TrEMBL
	ENSSSCG00030046620	UniProtKB/TrEMBL
	ENSSSCG00035015455	UniProtKB/TrEMBL
	ENSSSCG00040004196	UniProtKB/TrEMBL
	ENSSSCG00045018573	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00050076449	UniProtKB/TrEMBL
	ENSSSCG00055006918	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00060077051	UniProtKB/TrEMBL
	ENSSSCG00065053463	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSSSCG00070029741	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000000408	ENTREZGENE
	ENSSSCT00000000408.5	UniProtKB/TrEMBL
	ENSSSCT00000000409.5	UniProtKB/TrEMBL
	ENSSSCT00000085056	ENTREZGENE
	ENSSSCT00000085056.2	UniProtKB/TrEMBL
	ENSSSCT00005013083.1	UniProtKB/Swiss-Prot
	ENSSSCT00005013252.1	UniProtKB/TrEMBL
	ENSSSCT00005013327.1	UniProtKB/TrEMBL
	ENSSSCT00015088711.1	UniProtKB/TrEMBL
	ENSSSCT00015089271.1	UniProtKB/TrEMBL
	ENSSSCT00015089685.1	UniProtKB/TrEMBL
	ENSSSCT00015090225.1	UniProtKB/Swiss-Prot
	ENSSSCT00015090878.1	UniProtKB/TrEMBL
	ENSSSCT00025061745.1	UniProtKB/TrEMBL
	ENSSSCT00025062030.1	UniProtKB/TrEMBL
	ENSSSCT00030065047.1	UniProtKB/TrEMBL
	ENSSSCT00030065097.1	UniProtKB/TrEMBL
	ENSSSCT00035019697.1	UniProtKB/TrEMBL
	ENSSSCT00035019702.1	UniProtKB/TrEMBL
	ENSSSCT00040005514.1	UniProtKB/TrEMBL
	ENSSSCT00040005528.1	UniProtKB/TrEMBL
	ENSSSCT00040005539.1	UniProtKB/TrEMBL
	ENSSSCT00045031659.1	UniProtKB/Swiss-Prot
	ENSSSCT00045031763.1	UniProtKB/TrEMBL
	ENSSSCT00045031893.1	UniProtKB/TrEMBL
	ENSSSCT00045031986.1	UniProtKB/TrEMBL
	ENSSSCT00050105013.1	UniProtKB/TrEMBL
	ENSSSCT00050105032.1	UniProtKB/TrEMBL
	ENSSSCT00050105039.1	UniProtKB/TrEMBL
	ENSSSCT00055013765.1	UniProtKB/TrEMBL
	ENSSSCT00055013979.1	UniProtKB/TrEMBL
	ENSSSCT00055014064.1	UniProtKB/Swiss-Prot
	ENSSSCT00060106482.1	UniProtKB/TrEMBL
	ENSSSCT00060106545.1	UniProtKB/TrEMBL
	ENSSSCT00065073212.1	UniProtKB/TrEMBL
	ENSSSCT00065073257.1	UniProtKB/TrEMBL
	ENSSSCT00065073291.1	UniProtKB/TrEMBL
	ENSSSCT00065073327.1	UniProtKB/Swiss-Prot
	ENSSSCT00070059777.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	ssc:396807	UniProtKB/Swiss-Prot
NCBI Gene	MYL6	ENTREZGENE
PANTHER	MYOSIN LIGHT CHAIN 1, 3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MYOSIN LIGHT POLYPEPTIDE 6	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MYOSIN LIGHT POLYPEPTIDE 6	UniProtKB/TrEMBL
PROSITE	EF_HAND_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	EFh	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A480I0Y2	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1WAQ9_PIG	UniProtKB/TrEMBL
	A0A5G2QF69	ENTREZGENE
	A0A5S6FSE5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0UAN9_PIG	UniProtKB/TrEMBL
	A0A8D0X5A1	ENTREZGENE
	A0A8D1CMK0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1Q1E2_PIG	UniProtKB/TrEMBL
	A0A8D1X0X9	ENTREZGENE, UniProtKB/TrEMBL
	MYL6_PIG	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	A0A2C9F331	UniProtKB/TrEMBL
	A0A5G2QF69	UniProtKB/TrEMBL
	A0A8D0X5A1	UniProtKB/TrEMBL
	P16475	UniProtKB/Swiss-Prot
	P24572	UniProtKB/Swiss-Prot
	P24573	UniProtKB/Swiss-Prot
	Q12790	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar