FGF11 (fibroblast growth factor 11) - Rat Genome Database

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Gene: FGF11 (fibroblast growth factor 11) Sus scrofa
Analyze
Symbol: FGF11
Name: fibroblast growth factor 11
RGD ID: 14295375
Description: ENCODES a protein that exhibits acetylcholine-gated monoatomic cation-selective channel activity (inferred); extracellular ligand-gated monoatomic ion channel activity (inferred); growth factor activity (inferred); INVOLVED IN chemical synaptic transmission (inferred); excitatory postsynaptic potential (inferred); monoatomic ion transmembrane transport (inferred); ASSOCIATED WITH common variable immunodeficiency (ortholog); congenital myasthenic syndrome 2A (ortholog); dyskeratosis congenita (ortholog); FOUND IN cytoplasm (inferred); membrane (inferred); neuron projection (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,742,131 - 52,748,487 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,742,090 - 52,749,331 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,003,942 - 55,010,295 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
FGF11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1252,742,131 - 52,748,487 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11252,742,090 - 52,749,331 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21255,003,942 - 55,010,295 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGF11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38177,438,298 - 7,444,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl177,438,273 - 7,444,937 (+)EnsemblGRCh38hg38GRCh38
GRCh37177,341,617 - 7,348,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36177,283,413 - 7,288,975 (+)NCBINCBI36Build 36hg18NCBI36
Build 34177,283,412 - 7,288,973NCBI
Celera177,368,577 - 7,374,139 (+)NCBICelera
Cytogenetic Map17p13.1NCBI
HuRef177,236,633 - 7,242,196 (+)NCBIHuRef
CHM1_1177,351,783 - 7,357,349 (+)NCBICHM1_1
T2T-CHM13v2.0177,342,353 - 7,348,996 (+)NCBIT2T-CHM13v2.0
Fgf11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391169,686,894 - 69,693,775 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1169,686,894 - 69,692,683 (-)EnsemblGRCm39 Ensembl
GRCm381169,796,068 - 69,802,944 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1169,796,068 - 69,801,857 (-)EnsemblGRCm38mm10GRCm38
MGSCv371169,611,704 - 69,615,127 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361169,614,397 - 69,617,820 (-)NCBIMGSCv36mm8
MGSCv361170,382,309 - 70,385,732 (-)NCBIMGSCv36mm8
Cytogenetic Map11B3NCBI
cM Map1142.88NCBI
Fgf11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81055,015,232 - 55,020,773 (-)NCBIGRCr8
mRatBN7.21054,516,508 - 54,522,067 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1054,517,077 - 54,522,062 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1059,181,104 - 59,184,444 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01058,669,672 - 58,673,010 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01054,177,325 - 54,180,659 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01056,403,320 - 56,410,816 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,403,256 - 56,409,017 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,150,464 - 56,153,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,619,650 - 56,622,972 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11056,633,272 - 56,636,595 (-)NCBI
Celera1053,672,872 - 53,676,194 (-)NCBICelera
Cytogenetic Map10q24NCBI
Fgf11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554679,482,467 - 9,488,992 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554679,482,467 - 9,488,992 (-)NCBIChiLan1.0ChiLan1.0
FGF11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,035,065 - 15,041,731 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,002,058 - 17,007,522 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0177,472,262 - 7,478,927 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1177,460,995 - 7,465,105 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl177,459,880 - 7,465,105 (+)Ensemblpanpan1.1panPan2
FGF11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1532,368,380 - 32,375,031 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl532,369,831 - 32,373,020 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha532,506,201 - 32,513,135 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0532,473,777 - 32,480,720 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl532,475,515 - 32,480,715 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1532,439,009 - 32,445,945 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0532,397,737 - 32,404,667 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0532,575,007 - 32,581,943 (+)NCBIUU_Cfam_GSD_1.0
Fgf11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560247,247,083 - 47,253,657 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936595721,333 - 727,845 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936595721,295 - 727,845 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1166,814,392 - 6,821,727 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl166,818,208 - 6,821,721 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605914,586,674 - 14,592,596 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgf11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478610,050,002 - 10,056,390 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478610,049,954 - 10,056,376 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FGF11
171 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000078202   ⟹   ENSSSCP00000070350
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,742,131 - 52,748,487 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000078649   ⟹   ENSSSCP00000061701
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1252,745,656 - 52,748,480 (+)Ensembl
RefSeq Acc Id: XM_013981311   ⟹   XP_013836765
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11252,742,090 - 52,749,331 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013836765   ⟸   XM_013981311
- UniProtKB: A0A287BK28 (UniProtKB/TrEMBL),   A0A4X1V2Z2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000061701   ⟸   ENSSSCT00000078649
RefSeq Acc Id: ENSSSCP00000070350   ⟸   ENSSSCT00000078202
Protein Domains
Neurotransmitter-gated ion-channel ligand-binding   Neurotransmitter-gated ion-channel transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000051794 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00015043811 UniProtKB/TrEMBL
  ENSSSCG00025065046 UniProtKB/TrEMBL
  ENSSSCG00030074868 UniProtKB/TrEMBL
  ENSSSCG00035055404 UniProtKB/TrEMBL
  ENSSSCG00040019155 UniProtKB/TrEMBL
  ENSSSCG00045031184 UniProtKB/TrEMBL
  ENSSSCG00050005917 UniProtKB/TrEMBL
  ENSSSCG00055013176 UniProtKB/TrEMBL
  ENSSSCG00060047141 UniProtKB/TrEMBL
  ENSSSCG00065056298 UniProtKB/TrEMBL
  ENSSSCG00070021507 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000078202.2 UniProtKB/TrEMBL
  ENSSSCT00000078649.2 UniProtKB/TrEMBL
  ENSSSCT00015059018.1 UniProtKB/TrEMBL
  ENSSSCT00015059124.1 UniProtKB/TrEMBL
  ENSSSCT00015059239.1 UniProtKB/TrEMBL
  ENSSSCT00015059582.1 UniProtKB/TrEMBL
  ENSSSCT00015059660.1 UniProtKB/TrEMBL
  ENSSSCT00025089308.1 UniProtKB/TrEMBL
  ENSSSCT00025089396.1 UniProtKB/TrEMBL
  ENSSSCT00025089515.1 UniProtKB/TrEMBL
  ENSSSCT00025089722.1 UniProtKB/TrEMBL
  ENSSSCT00025089849.1 UniProtKB/TrEMBL
  ENSSSCT00030105175.1 UniProtKB/TrEMBL
  ENSSSCT00030105177.1 UniProtKB/TrEMBL
  ENSSSCT00030105180.1 UniProtKB/TrEMBL
  ENSSSCT00030105185.1 UniProtKB/TrEMBL
  ENSSSCT00030105189.1 UniProtKB/TrEMBL
  ENSSSCT00035073899.1 UniProtKB/TrEMBL
  ENSSSCT00035073910.1 UniProtKB/TrEMBL
  ENSSSCT00035073913.1 UniProtKB/TrEMBL
  ENSSSCT00035073932.1 UniProtKB/TrEMBL
  ENSSSCT00035073944.1 UniProtKB/TrEMBL
  ENSSSCT00040025861.1 UniProtKB/TrEMBL
  ENSSSCT00040025901.1 UniProtKB/TrEMBL
  ENSSSCT00040025917.1 UniProtKB/TrEMBL
  ENSSSCT00040025951.1 UniProtKB/TrEMBL
  ENSSSCT00045053176.1 UniProtKB/TrEMBL
  ENSSSCT00045053266.1 UniProtKB/TrEMBL
  ENSSSCT00045053353.1 UniProtKB/TrEMBL
  ENSSSCT00045053411.1 UniProtKB/TrEMBL
  ENSSSCT00045053566.1 UniProtKB/TrEMBL
  ENSSSCT00045053683.1 UniProtKB/TrEMBL
  ENSSSCT00050008039.1 UniProtKB/TrEMBL
  ENSSSCT00050008048.1 UniProtKB/TrEMBL
  ENSSSCT00050008056.1 UniProtKB/TrEMBL
  ENSSSCT00050008060.1 UniProtKB/TrEMBL
  ENSSSCT00050008066.1 UniProtKB/TrEMBL
  ENSSSCT00055025952.1 UniProtKB/TrEMBL
  ENSSSCT00055026003.1 UniProtKB/TrEMBL
  ENSSSCT00055026045.1 UniProtKB/TrEMBL
  ENSSSCT00055026085.1 UniProtKB/TrEMBL
  ENSSSCT00055026152.1 UniProtKB/TrEMBL
  ENSSSCT00055026214.1 UniProtKB/TrEMBL
  ENSSSCT00060064001.1 UniProtKB/TrEMBL
  ENSSSCT00060064003.1 UniProtKB/TrEMBL
  ENSSSCT00060064014.1 UniProtKB/TrEMBL
  ENSSSCT00060064022.1 UniProtKB/TrEMBL
  ENSSSCT00060064025.1 UniProtKB/TrEMBL
  ENSSSCT00065077057.1 UniProtKB/TrEMBL
  ENSSSCT00065077068.1 UniProtKB/TrEMBL
  ENSSSCT00065077072.1 UniProtKB/TrEMBL
  ENSSSCT00065077076.1 UniProtKB/TrEMBL
  ENSSSCT00070042764.1 UniProtKB/TrEMBL
  ENSSSCT00070042773.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/TrEMBL
  2.80.10.50 UniProtKB/TrEMBL
InterPro Fibroblast_GF_fam UniProtKB/TrEMBL
  IL1/FGF UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/TrEMBL
  Neur_channel UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/TrEMBL
  Nicotinic_acetylcholine_rcpt UniProtKB/TrEMBL
KEGG Report ssc:100739797 UniProtKB/TrEMBL
NCBI Gene FGF11 ENTREZGENE
PANTHER ACETYLCHOLINE RECEPTOR SUBUNIT BETA UniProtKB/TrEMBL
  PTHR11486 UniProtKB/TrEMBL
  PTHR11486:SF67 UniProtKB/TrEMBL
  PTHR18945 UniProtKB/TrEMBL
Pfam FGF UniProtKB/TrEMBL
  Neur_chan_LBD UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/TrEMBL
PRINTS HBGFFGF UniProtKB/TrEMBL
  IL1HBGF UniProtKB/TrEMBL
  NICOTINICR UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/TrEMBL
  NEUROTR_ION_CHANNEL UniProtKB/TrEMBL
SMART FGF UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/TrEMBL
  SSF63712 UniProtKB/TrEMBL
  SSF90112 UniProtKB/TrEMBL
UniProt A0A287BK28 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V2Z2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V4A7_PIG UniProtKB/TrEMBL
  A0A5G2QDK0_PIG UniProtKB/TrEMBL
  A0A5G2R1X5_PIG UniProtKB/TrEMBL
  A0A8D0U4D9_PIG UniProtKB/TrEMBL
  A0A8D0YGD9_PIG UniProtKB/TrEMBL
  A0A8D1AES4_PIG UniProtKB/TrEMBL
  A0A8D1CJC4_PIG UniProtKB/TrEMBL
  A0A8D1CYK3_PIG UniProtKB/TrEMBL
  A0A8D1U1X0_PIG UniProtKB/TrEMBL
  A0A8D1VQ66_PIG UniProtKB/TrEMBL