| Gene: C1H14orf28 (chromosome 1 C14orf28 homolog) Sus scrofa |
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Analyze |
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| Symbol: |
C1H14orf28 (Ensembl: C14orf28) |
| Name: |
chromosome 1 C14orf28 homolog |
| RGD ID: |
14293777 |
| Description: |
ASSOCIATED WITH Brain-Lung-Thyroid Syndrome (ortholog); Fanconi anemia (ortholog); genetic disease (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
uncharacterized protein C14orf28 homolog |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
Sscrofa11.1 - Pig Sscrofa11.1 Assembly |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 1 | 175,145,913 - 175,156,606 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 175,145,918 - 175,156,597 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 194,910,933 - 194,921,563 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
C1H14orf28
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 1 | 175,145,913 - 175,156,606 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 175,145,918 - 175,156,597 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 194,910,933 - 194,921,563 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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C14orf28
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 14 | 44,897,275 - 44,907,257 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 14 | 44,897,275 - 44,907,257 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 14 | 45,366,478 - 45,376,460 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 14 | 44,436,257 - 44,446,210 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 14 | 25,227,762 - 25,237,715 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | q21.2 | NCBI | | | | | HuRef | 14 | 25,477,418 - 25,487,371 (+) | NCBI | | HuRef | | | CHM1_1 | 14 | 45,304,736 - 45,314,689 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 14 | 39,089,234 - 39,099,216 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Gm527
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 12 | 64,964,685 - 64,971,365 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 12 | 64,964,680 - 64,971,366 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 12 | 64,917,911 - 64,924,591 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 12 | 64,917,906 - 64,924,592 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 12 | 66,018,898 - 66,025,578 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 12 | 65,836,516 - 65,843,196 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 12 | 66,050,413 - 66,054,197 (+) | NCBI | | Celera | | | Cytogenetic Map | 12 | C1 | NCBI | | | | | cM Map | 12 | 27.21 | NCBI | | | | |
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C6h14orf28
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 6 | 88,701,651 - 88,710,204 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 6 | 82,965,304 - 82,973,942 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 6 | 82,965,328 - 82,972,558 (+) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 6 | 83,325,212 - 83,332,215 (+) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 6 | 83,624,575 - 83,631,578 (+) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 6 | 83,066,308 - 83,073,315 (+) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 6 | 86,651,196 - 86,659,371 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 6 | 86,651,196 - 86,659,371 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 6 | 96,145,979 - 96,155,042 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 6 | 86,256,155 - 86,263,086 (+) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 6 | 86,262,235 - 86,266,292 (+) | NCBI | | | | | Celera | 6 | 81,533,197 - 81,540,085 (+) | NCBI | | Celera | | | Cytogenetic Map | 6 | q24 | NCBI | | | | |
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CUNH14orf28
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955409 | 17,012,125 - 17,024,784 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955409 | 17,014,194 - 17,023,953 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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C15H14orf28
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 15 | 46,070,659 - 46,080,698 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 14 | 45,287,154 - 45,297,194 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 14 | 25,514,741 - 25,524,710 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 14 | 43,843,018 - 43,852,917 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 14 | 43,843,018 - 43,852,917 (+) | Ensembl | panpan1.1 | | panPan2 | |
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C8H14orf28
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 8 | 22,366,822 - 22,378,411 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 8 | 22,369,790 - 22,375,025 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 8 | 22,184,834 - 22,196,392 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 8 | 22,525,913 - 22,537,473 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 8 | 22,526,893 - 22,535,764 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 8 | 22,188,391 - 22,199,954 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 8 | 22,254,701 - 22,266,253 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 8 | 22,590,803 - 22,602,360 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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CUNH14orf28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024408640 | 54,323,411 - 54,333,350 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936583 | 4,355,492 - 4,363,107 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936583 | 4,355,562 - 4,365,470 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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CUNH14orf28
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 24 | 22,015,251 - 22,026,008 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 24 | 22,015,206 - 22,026,001 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666116 | 513,820 - 524,488 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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CUNH14orf28
(Heterocephalus glaber - naked mole-rat) |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
hemolymphoid system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
| High |
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| Medium |
1
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| Low |
9
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4
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3
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5
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2
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23
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2
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3
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3
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| Below cutoff |
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Sequence
| RefSeq Acc Id: |
ENSSSCT00000005509 ⟹ ENSSSCP00000005372 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 Ensembl | 1 | 175,145,913 - 175,156,606 (+) | Ensembl |
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| RefSeq Acc Id: |
ENSSSCT00000082728 ⟹ ENSSSCP00000073565 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 Ensembl | 1 | 175,149,205 - 175,156,606 (+) | Ensembl |
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| RefSeq Acc Id: |
XM_003480458 ⟹ XP_003480506 |
| Type: |
CODING |
| Position: |
| Pig Assembly | Chr | Position (strand) | Source |
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Sscrofa11.1 | 1 | 175,145,918 - 175,156,597 (+) | NCBI |
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| Sequence: |
GCGTCGTCAGGCAGCTGTGAACAGGGGAGTGGGGACTGGGGGGAGGGGGGCGGAGGTCAGGCCG
AACCTTCCTCCGTAATAAGAAGCTACGCGTCCCGCGGTCCTGGCTCGGTGGGTCCGGTCGGATC
GGGCCTGGGCGCTGGAGCTGCTGTGGCTCCCGCCGCGGCGGGTGCGATGGAGGCCGTACCGGAG
CCCAGCGGTCACGCCGGGGGAGGCCGAGACAGCCGGCGGTGCTGGTAGATGAGGCGGCGGCGGT
GGCGGCAGCACGGACTCTCCATGAGCAAGCGGAGGCGGCGACGGGTGCGGCGGCACCGGCGGTT
TTCGGTCCCCGAGGAGGATGAAGACACTGTTTGAAGAGATCAAAGCATCAATTAAAAATAACTA
TAACCAAGATCGCTCATTTTGGAGGCCTGTTCTTCCTTGGGGAGGTGTTTTTACTATCAAAGCT
GGCCGCAAAGCAGTATCCTGTACACCACTCTATGTTGAAATAAGACTGAAAAATACCTGCACCA
TAGATGGATTCTTGATGTTATTGTATGTCATTCTCAATGAAAATGAAAATTTCCCTAGGGAACT
CTCTCTTCATTTAGGTAGAGAATTTGTAGACTGTTTTCTTTATTTAATGGACACCTACAGTTTT
ACAACTGTGAAGCTACTTTGGATTTGGGACAAGATGGAAAAACAGCAATATAAATCTGAAGTTC
ATAAAGCTTCATTAATAATAGATTTGTTTGGGAATGAGCATGATAATTTTACAAAAAATCTCGA
AAATCTCATGTCAACCATACAAGAGAGTTACTGTTCCAACTGGCGATGCCCAACTCGAGTGCAG
GAAGATCAGCAGCGCACAATTAATATAAATCCTCCTCAAGAAATTCCACATGGAAACTTGATAC
GACTGGCTGTGGATGAGTTATTCTGTTCCAGGATTGAACTGTGTGAAGAGCGTGGGTGTGGTGG
TTTAAGAGAATTTTCCCAACGAGTGTTTTGCCATGGGGCACCCCCTTTTGTTGTCTTAAATATG
CAGCATTGGAAGTCTGAAGATCTGGCATATGTACCTTATTACTTGGATTTATCTGATCACAAGT
ATTTGTTGGAAGGTGCCACATTGTTTAACAAAGAGGAACATCATTATTCTGCAGCTTTCCAAAT
TGATGGACACTGGATGCACTATGATGGCCTCAGAAATGTGAATTTAATTTTGTTAAATAAACCC
CCAGAGTTTCTCCTCTTGTCATCATTGGTTTATATTCGAGCAACAGAGAAATAAATATAGACTG
ATGCTAAATTAAATTGTTTTCCCTCCTGCCCATGCTCCCCCAAATGAAGGGCTTTTATTTTGTA
TATACTTGGTATCCAAGGAAATAGTTCAACTATGTTAGTTTCAAAGGTGTATTTTCTAGTGTTT
ACCCCCAGGTAAATGTTTTATATAGAGAATCTATGCAAAAAATGTTTGTATTTCTTTTTTTCTA
TATCCCAGGTTATTTTTATACAAGCATTTTTTATGTTAAATAAAATGTATCTTGTGGCCTTTGT
ATTTGTTATTTATATGTACCTCAAGTTTGTTTTTTGTGTTTTTTTTTTTACAATGCTGTCTTTG
AATCCAAGAAAATACTTCATCATTTGAATTCTCAATTTTTCTTTTTGGATAGCCAAATAAAACC
TGGGTATAAGTCAGTTTTCAGTTTATATAAATTCAAAATTTATCTGACTGTATTTATTTGCCCT
ACCTCACTATAATCCAAAGTGCACTATTGGATCTAGTATGGGTTTGAATGTACAACTTATAGAT
GGCTGTCTATTTTATCTGTTGATTTGCCTAATGGCCCTGCAGCAATTTTTTAAAATACTTTGGT
GAGAATGTTCTTCTGAACTTGAATTATTTCTTTATAATGGCAAGTTACTTTCATAACCACTTGC
TAAAATATTAAAAATCTACAAGTGGATTTAACTGTTAAAACTAAGATCCTAAGCTTAAAGTTAT
TGCTACAAATGTATAGCTAATCTAAATATTTATAATAAATGTAATAGAAATTCTCTAGCAAAAA
TTTATTTTGCAAAAAGACAATTATTTTAAAAAATGTTAGGCAAACTGTATGTTTACTAATGTTG
GATTAACAATGGAAATGTACTTTAAATATATATTTAAGAGAAAATGGGTGCCTGGGAATACAGT
TGATCCTTAAACAACTCGGGGGCTGGGGCACTGACCCTCCACCCCAGTCAAAAATCCCCATGTA
ACTTTACAGTCGTCCCTCCATATTTGTGGTTCCAAATCAAACAACCTTGGGTCATGTGTGTTGG
TGGTATAGTGATGAGCATAGCTGCCTTCCAAACAACCTTGGATCATGTAGCACTATAGTACGTA
TTTATTGAAAAAAATCCATGTGTAAGTGGACCCACACAGTTCAAACCCATGCTGTACAAGGTCA
ACTGTATTTCTCTTCCTAGTAAGTCATATTGGCACAGAGGAAAAAATACTTCAATTTTTGTGGT
AACATCTGTGTGCTCCCTTGTAAATAGTAAATTGGTAGCATGAGCCTTTCTTTGATTTGCAATA
TAAATCACCAGAATGTTATAGTTATCAGAATATTATGTTTCTTTTCACAGACCCGAAGATCTCT
CTTTTGCAATTTAAAAGAAAAAAATTAAGTACTATTCTCAAGGGAAAATACTTTTTGAAATTTA
TCACCATTCATTTTAGTGTTTATATTTCAATAAACAGCCTACCTTAGGTTTCAGGTTGAGATTG
AGTGCAATATTTTTGGAGATTTCTACATAGCAATGCAGTTCACTGCCGTATACCAAATTGCAAA
GGTTTAATTCAATAAATTAAGTCTTACATTGCTTAGGTGCCATGCTGAGGTAACTTACTGAAGA
ATGGATAAATGTGAGTGCAATGCTGATGAAAATGCCTTTTTATCTTAAGTAAAAAAAGGAATAT
TCATAGCATTTGCTCAAAATAGTGATTTATTTTACTAAAAAATTAACCCCGGGGTTTATTTAAA
TAATTCCCCACATGTCTTTAAATAGGATTTAATTTATAGTAAACTTTCCTGGGGACACGTTATT
GCATGAATCAAAGTACAAAAAACACGAACATTAACATATATAAATGGTATCATTAAAAAAATTA
TTCCTAATGCAGATTTATTATTTTATGAATTGCACTTTATTTGAAATAATAATAGTGTATCATG
AAACATTGACTTGCCTACCTCACAGGGTTGTTGTGAGGATTAAAATGTTTGTTAATATCTTGAC
TACCTTAAATATGCTAATAAAAAAAAACATTTTTTCTA
hide sequence
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| RefSeq Acc Id: |
XP_003480506 ⟸ XM_003480458 |
| - UniProtKB: |
F1SIN4 (UniProtKB/TrEMBL), A0A4X1SNI8 (UniProtKB/TrEMBL), F1SIN2 (UniProtKB/TrEMBL), A0A8D0Y6X6 (UniProtKB/TrEMBL) |
| - Sequence: |
MKTLFEEIKASIKNNYNQDRSFWRPVLPWGGVFTIKAGRKAVSCTPLYVEIRLKNTCTIDGFLM
LLYVILNENENFPRELSLHLGREFVDCFLYLMDTYSFTTVKLLWIWDKMEKQQYKSEVHKASLI
IDLFGNEHDNFTKNLENLMSTIQESYCSNWRCPTRVQEDQQRTININPPQEIPHGNLIRLAVDE
LFCSRIELCEERGCGGLREFSQRVFCHGAPPFVVLNMQHWKSEDLAYVPYYLDLSDHKYLLEGA
TLFNKEEHHYSAAFQIDGHWMHYDGLRNVNLILLNKPPEFLLLSSLVYIRATEK
hide sequence
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| RefSeq Acc Id: |
ENSSSCP00000005372 ⟸ ENSSSCT00000005509 |
| RefSeq Acc Id: |
ENSSSCP00000073565 ⟸ ENSSSCT00000082728 |
Additional Information
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