NUDT16 (nudix hydrolase 16) - Rat Genome Database

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Gene: NUDT16 (nudix hydrolase 16) Sus scrofa
Analyze
Symbol: NUDT16
Name: nudix hydrolase 16
RGD ID: 14292031
Description: ENCODES a protein that exhibits dITP diphosphatase activity (ortholog); identical protein binding (ortholog); INVOLVED IN chromosome organization (ortholog); dITP catabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); Primary Lymphedema with Myelodysplasia (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: U8 snoRNA-decapping enzyme
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,122,541 - 1,128,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,125,180 - 1,128,036 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
NUDT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,122,541 - 1,128,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,125,180 - 1,128,036 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NUDT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3131,381,671 - 131,388,830 (+)EnsemblGRCh38hg38GRCh38
GRCh383131,381,671 - 131,388,830 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373131,100,515 - 131,107,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,583,397 - 132,587,619 (+)NCBINCBI36hg18NCBI36
Build 343132,583,404 - 132,587,627NCBI
Celera3129,526,187 - 129,533,346 (+)NCBI
Cytogenetic Map3q22.1NCBI
HuRef3128,485,333 - 128,492,492 (+)NCBIHuRef
CHM1_13131,064,106 - 131,071,265 (+)NCBICHM1_1
Nudt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,006,531 - 105,010,332 (-)NCBIGRCm39mm39
GRCm39 Ensembl9105,006,102 - 105,009,023 (-)Ensembl
GRCm389105,129,332 - 105,133,133 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,128,903 - 105,131,824 (-)EnsemblGRCm38mm10GRCm38
MGSCv379105,031,668 - 105,034,135 (-)NCBIGRCm37mm9NCBIm37
MGSCv369104,987,773 - 104,989,905 (-)NCBImm8
Celera9104,714,940 - 104,717,404 (-)NCBICelera
Cytogenetic Map9F1NCBI
Nudt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28105,739,927 - 105,741,982 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl8105,739,623 - 105,741,998 (-)Ensembl
Rnor_6.08113,673,069 - 113,675,124 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,672,758 - 113,675,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,059,242 - 113,061,297 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,199,789 - 110,201,844 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18110,219,857 - 110,221,366 (-)NCBI
Celera8105,096,287 - 105,098,342 (-)NCBICelera
Cytogenetic Map8q32NCBI
Nudt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555017,083,068 - 7,085,505 (-)NCBIChiLan1.0ChiLan1.0
NUDT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13135,788,354 - 135,795,417 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,788,354 - 135,790,038 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03128,466,119 - 128,473,186 (+)NCBIMhudiblu_PPA_v0panPan3
NUDT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,498,730 - 28,500,998 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,498,652 - 28,499,998 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2328,472,997 - 28,475,571 (+)NCBI
ROS_Cfam_1.02329,005,996 - 29,008,575 (+)NCBI
UMICH_Zoey_3.12328,701,498 - 28,704,040 (+)NCBI
UNSW_CanFamBas_1.02328,763,058 - 28,765,630 (+)NCBI
UU_Cfam_GSD_1.02329,012,791 - 29,015,352 (+)NCBI
LOC101965734
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560268,064,762 - 68,067,873 (+)NCBI
SpeTri2.0NW_0049365294,825,277 - 4,827,011 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11558,847,418 - 58,849,133 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1558,847,560 - 58,849,246 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604131,857,701 - 31,864,774 (-)NCBIVero_WHO_p1.0


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 5 2 23 2 2 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000040877   ⟹   ENSSSCP00000046177
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl131,122,541 - 1,128,041 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000060239   ⟹   ENSSSCP00000050685
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl131,125,180 - 1,128,041 (-)Ensembl
RefSeq Acc Id: XM_021071323   ⟹   XP_020926982
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1131,125,180 - 1,128,036 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020926982 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020926982   ⟸   XM_021071323
- Sequence:
RefSeq Acc Id: ENSSSCP00000046177   ⟸   ENSSSCT00000040877
RefSeq Acc Id: ENSSSCP00000050685   ⟸   ENSSSCT00000060239
Protein Domains
Nudix hydrolase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032424 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070021637 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000046177 UniProtKB/TrEMBL
  ENSSSCP00000050685 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070036167 UniProtKB/TrEMBL
  ENSSSCP00070036168 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000040877 UniProtKB/TrEMBL
  ENSSSCT00000060239 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070042988 UniProtKB/TrEMBL
  ENSSSCT00070042989 UniProtKB/TrEMBL
InterPro NUDIX_hydrolase-like_dom_sf UniProtKB/TrEMBL
  NUDIX_hydrolase_dom UniProtKB/TrEMBL
NCBI Gene NUDT16 ENTREZGENE
Pfam NUDIX UniProtKB/TrEMBL
PROSITE NUDIX UniProtKB/TrEMBL
Superfamily-SCOP SSF55811 UniProtKB/TrEMBL
UniProt A0A287AQ60_PIG UniProtKB/TrEMBL
  A0A287B341_PIG UniProtKB/TrEMBL
  A0A4X1V489_PIG UniProtKB/TrEMBL
  A0A4X1V5V4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90957 ENTREZGENE