ZNF446 (zinc finger protein 446) - Rat Genome Database

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Gene: ZNF446 (zinc finger protein 446) Sus scrofa
Analyze
Symbol: ZNF446
Name: zinc finger protein 446
RGD ID: 14291660
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog); High Myopia (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,048,075 - 63,056,530 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,049,401 - 63,066,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ZNF446
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,048,075 - 63,056,530 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,049,401 - 63,066,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF446
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381958,476,352 - 58,489,533 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1958,474,017 - 58,481,230 (+)EnsemblGRCh38hg38GRCh38
GRCh371958,987,719 - 59,000,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361963,679,607 - 63,684,409 (+)NCBINCBI36Build 36hg18NCBI36
Celera1956,031,803 - 56,036,605 (+)NCBICelera
Cytogenetic Map19q13.43NCBI
HuRef1955,296,743 - 55,301,545 (+)NCBIHuRef
CHM1_11958,981,658 - 58,986,460 (+)NCBICHM1_1
T2T-CHM13v2.01961,572,319 - 61,585,623 (+)NCBIT2T-CHM13v2.0
Zfp446
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39712,711,726 - 12,718,323 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl712,711,775 - 12,719,641 (+)EnsemblGRCm39 Ensembl
GRCm38712,976,196 - 12,985,717 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl712,977,848 - 12,985,714 (+)EnsemblGRCm38mm10GRCm38
MGSCv37713,563,197 - 13,571,065 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36711,878,027 - 11,884,488 (+)NCBIMGSCv36mm8
Celera710,602,035 - 10,611,243 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map77.71NCBI
Zfp446
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8182,673,920 - 82,680,414 (+)NCBIGRCr8
mRatBN7.2173,594,953 - 73,612,685 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl173,601,759 - 73,612,685 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0165,595,518 - 65,608,757 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl165,590,404 - 65,612,490 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0166,406,751 - 66,419,912 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera160,231,096 - 60,244,335 (-)NCBICelera
Cytogenetic Map1q21NCBI
Znf446
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555841,104,102 - 1,106,765 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555841,102,597 - 1,107,177 (+)NCBIChiLan1.0ChiLan1.0
ZNF446
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22064,746,365 - 64,753,035 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11966,533,396 - 66,540,910 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01955,477,760 - 55,485,258 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11964,304,738 - 64,310,095 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1964,304,385 - 64,310,095 (+)Ensemblpanpan1.1panPan2
ZNF446
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1199,440,651 - 99,446,984 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl199,441,720 - 99,454,958 (-)EnsemblCanFam3.1canFam3CanFam3.1
Znf446
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118218,036,452 - 218,047,663 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493706271,926 - 83,014 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF446
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1650,758,513 - 50,767,024 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl650,762,020 - 50,768,491 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660454,061,029 - 4,070,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf446
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462483298,176 - 100,840 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462483297,276 - 105,169 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF446
60 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 9 3 3 5 2 23 2 3 1
Below cutoff 1 1 2

Sequence


RefSeq Acc Id: ENSSSCT00000055967   ⟹   ENSSSCP00000059458
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl663,048,075 - 63,056,530 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081893   ⟹   ENSSSCP00000073059
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl663,048,075 - 63,055,808 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000097700   ⟹   ENSSSCP00000079729
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl663,051,053 - 63,056,455 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000102030   ⟹   ENSSSCP00000074855
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl663,051,053 - 63,055,808 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000103203   ⟹   ENSSSCP00000079181
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl663,051,053 - 63,053,680 (+)Ensembl
RefSeq Acc Id: XM_021097387   ⟹   XP_020953046
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,057,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097388   ⟹   XP_020953047
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,057,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097389   ⟹   XP_020953048
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,057,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097390   ⟹   XP_020953049
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,057,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097391   ⟹   XP_020953050
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,049,401 - 63,057,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097392   ⟹   XP_020953051
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,057,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097393   ⟹   XP_020953052
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,057,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097394   ⟹   XP_020953053
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,057,863 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021097395   ⟹   XP_020953054
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,066,130 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345402
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,066,122 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002345403
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1663,050,341 - 63,055,004 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020953050   ⟸   XM_021097391
- Peptide Label: isoform X5
- UniProtKB: A0A287BSN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953054   ⟸   XM_021097395
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020953052   ⟸   XM_021097393
- Peptide Label: isoform X5
- UniProtKB: A0A287BSN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953051   ⟸   XM_021097392
- Peptide Label: isoform X5
- UniProtKB: A0A287BSN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953053   ⟸   XM_021097394
- Peptide Label: isoform X5
- UniProtKB: A0A287BSN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020953046   ⟸   XM_021097387
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020953048   ⟸   XM_021097389
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020953049   ⟸   XM_021097390
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020953047   ⟸   XM_021097388
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000059458   ⟸   ENSSSCT00000055967
RefSeq Acc Id: ENSSSCP00000073059   ⟸   ENSSSCT00000081893
RefSeq Acc Id: ENSSSCP00000079729   ⟸   ENSSSCT00000097700
RefSeq Acc Id: ENSSSCP00000074855   ⟸   ENSSSCT00000102030
RefSeq Acc Id: ENSSSCP00000079181   ⟸   ENSSSCT00000103203
Protein Domains
C2H2-type   KRAB   SCAN box


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039930 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000055967 ENTREZGENE
  ENSSSCT00000055967.3 UniProtKB/TrEMBL
  ENSSSCT00000081893.2 UniProtKB/TrEMBL
  ENSSSCT00000097700.1 UniProtKB/TrEMBL
  ENSSSCT00000102030.1 UniProtKB/TrEMBL
  ENSSSCT00000103203.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.4020.10 UniProtKB/TrEMBL
  6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  SCAN_dom UniProtKB/TrEMBL
  SCAN_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF446 ENTREZGENE
PANTHER PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN BOX DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  SCAN_BOX UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  SCAN UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/TrEMBL
  SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A287BSN5 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R9R7_PIG UniProtKB/TrEMBL
  A0A8W4F992_PIG UniProtKB/TrEMBL
  A0A8W4FIM3_PIG UniProtKB/TrEMBL
  A0A8W4FK68_PIG UniProtKB/TrEMBL
VGNC ID VGNC:95241 ENTREZGENE