ZFAND5 (zinc finger AN1-type containing 5) - Rat Genome Database

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Gene: ZFAND5 (zinc finger AN1-type containing 5) Sus scrofa
Analyze
Symbol: ZFAND5
Name: zinc finger AN1-type containing 5
RGD ID: 14291346
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN face development (ortholog); fibroblast migration (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Prostatic Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: AN1-type zinc finger protein 5; zinc finger protein 216; zinc finger, AN1-type domain 5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,703,200 - 225,714,365 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,703,027 - 225,714,522 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,229,611 - 252,241,057 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
ZFAND5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1225,703,200 - 225,714,365 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11225,703,027 - 225,714,522 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21252,229,611 - 252,241,057 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZFAND5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38972,351,413 - 72,365,208 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl972,351,413 - 72,365,235 (-)EnsemblGRCh38hg38GRCh38
GRCh37974,966,329 - 74,980,124 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36974,156,161 - 74,169,983 (-)NCBINCBI36Build 36hg18NCBI36
Build 34972,198,927 - 72,209,446NCBI
Celera945,539,096 - 45,552,933 (-)NCBICelera
Cytogenetic Map9q21.13NCBI
HuRef944,789,852 - 44,803,687 (-)NCBIHuRef
CHM1_1975,113,014 - 75,126,847 (-)NCBICHM1_1
T2T-CHM13v2.0984,502,257 - 84,516,065 (-)NCBIT2T-CHM13v2.0
Zfand5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391921,249,150 - 21,264,204 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1921,249,642 - 21,264,204 (+)EnsemblGRCm39 Ensembl
GRCm381921,271,786 - 21,286,840 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1921,272,278 - 21,286,840 (+)EnsemblGRCm38mm10GRCm38
MGSCv371921,346,768 - 21,356,779 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361921,339,375 - 21,349,386 (+)NCBIMGSCv36mm8
Celera1921,998,177 - 22,007,973 (+)NCBICelera
Cytogenetic Map19BNCBI
cM Map1914.32NCBI
Zfand5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81228,191,064 - 228,206,947 (+)NCBIGRCr8
mRatBN7.21218,765,735 - 218,780,391 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1218,766,614 - 218,775,843 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1227,210,471 - 227,220,107 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01234,147,044 - 234,156,680 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01226,965,063 - 226,974,699 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01238,842,506 - 238,854,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1238,843,338 - 238,852,566 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01246,131,037 - 246,141,413 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41224,442,733 - 224,448,701 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11224,599,098 - 224,612,452 (+)NCBI
Celera1216,025,336 - 216,031,304 (+)NCBICelera
Cytogenetic Map1q51NCBI
Zfand5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955434841,409 - 847,598 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955434841,410 - 847,598 (+)NCBIChiLan1.0ChiLan1.0
ZFAND5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21171,544,862 - 71,559,962 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1971,550,804 - 71,561,625 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0952,446,788 - 52,457,527 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1971,144,900 - 71,154,993 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl971,144,900 - 71,154,869 (-)Ensemblpanpan1.1panPan2
ZFAND5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1185,420,091 - 85,429,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl185,420,127 - 85,428,424 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha185,883,742 - 85,895,048 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0185,869,038 - 85,880,344 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl185,871,695 - 85,878,925 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1185,630,174 - 85,641,465 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0185,334,760 - 85,346,046 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0186,093,522 - 86,104,824 (+)NCBIUU_Cfam_GSD_1.0
Zfand5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947132,790,474 - 132,797,375 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365038,377,544 - 8,382,530 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFAND5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11283,403,552 - 83,414,572 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1283,401,111 - 83,414,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603871,824,141 - 71,835,426 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfand5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624736611,726 - 621,360 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZFAND5
163 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 4 3 5 2 23 2 3 3
Low 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001097506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005660160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021102003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021102520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK232379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK233179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK234433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK234850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK346523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK395457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK396775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT998539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU469484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ492686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ492687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01089251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSSCT00000005799   ⟹   ENSSSCP00000005655
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1225,703,200 - 225,714,365 (-)Ensembl
RefSeq Acc Id: NM_001097506   ⟹   NP_001090975
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11225,703,027 - 225,709,191 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005660160   ⟹   XP_005660217
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11225,703,196 - 225,714,522 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102003   ⟹   XP_020957662
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11225,703,196 - 225,714,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102520   ⟹   XP_020958179
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11225,703,196 - 225,714,365 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001090975   ⟸   NM_001097506
- UniProtKB: A4U9C9 (UniProtKB/TrEMBL),   A0A4X1W3U2 (UniProtKB/TrEMBL),   I3LS37 (UniProtKB/TrEMBL),   A0A8D0X2N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005660217   ⟸   XM_005660160
- Peptide Label: isoform X1
- UniProtKB: A4U9C9 (UniProtKB/TrEMBL),   A0A4X1W3U2 (UniProtKB/TrEMBL),   I3LS37 (UniProtKB/TrEMBL),   A0A8D0X2N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020957662   ⟸   XM_021102003
- Peptide Label: isoform X1
- UniProtKB: A0A4X1W3U2 (UniProtKB/TrEMBL),   I3LS37 (UniProtKB/TrEMBL),   A4U9C9 (UniProtKB/TrEMBL),   A0A8D0X2N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020958179   ⟸   XM_021102520
- Peptide Label: isoform X1
- UniProtKB: A0A4X1W3U2 (UniProtKB/TrEMBL),   I3LS37 (UniProtKB/TrEMBL),   A4U9C9 (UniProtKB/TrEMBL),   A0A8D0X2N9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000005655   ⟸   ENSSSCT00000005799
Protein Domains
A20-type   AN1-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030268 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005037534 UniProtKB/TrEMBL
  ENSSSCG00015033953 UniProtKB/TrEMBL
  ENSSSCG00025032630 UniProtKB/TrEMBL
  ENSSSCG00030046658 UniProtKB/TrEMBL
  ENSSSCG00035037225 UniProtKB/TrEMBL
  ENSSSCG00040058003 UniProtKB/TrEMBL
  ENSSSCG00045006033 UniProtKB/TrEMBL
  ENSSSCG00050028674 UniProtKB/TrEMBL
  ENSSSCG00055006962 UniProtKB/TrEMBL
  ENSSSCG00060015934 UniProtKB/TrEMBL
  ENSSSCG00065001293 UniProtKB/TrEMBL
  ENSSSCG00070028538 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005799 ENTREZGENE
  ENSSSCT00000005799.4 UniProtKB/TrEMBL
  ENSSSCT00005060048.1 UniProtKB/TrEMBL
  ENSSSCT00015045251.1 UniProtKB/TrEMBL
  ENSSSCT00025044378.1 UniProtKB/TrEMBL
  ENSSSCT00030065096.1 UniProtKB/TrEMBL
  ENSSSCT00035049362.1 UniProtKB/TrEMBL
  ENSSSCT00040078710.1 UniProtKB/TrEMBL
  ENSSSCT00045010022.1 UniProtKB/TrEMBL
  ENSSSCT00050038554.1 UniProtKB/TrEMBL
  ENSSSCT00055013499.1 UniProtKB/TrEMBL
  ENSSSCT00060021219.1 UniProtKB/TrEMBL
  ENSSSCT00065001576.1 UniProtKB/TrEMBL
  ENSSSCT00070057257.1 UniProtKB/TrEMBL
  ENSSSCT00070057258.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.4770 UniProtKB/TrEMBL
  4.10.1110.10 UniProtKB/TrEMBL
InterPro AN1-like_Znf UniProtKB/TrEMBL
  Znf_A20 UniProtKB/TrEMBL
  Znf_AN1 UniProtKB/TrEMBL
KEGG Report ssc:100048933 UniProtKB/TrEMBL
NCBI Gene ZFAND5 ENTREZGENE
PANTHER AN1-TYPE ZINC FINGER PROTEIN UniProtKB/TrEMBL
  AN1-TYPE ZINC FINGER PROTEIN 5 UniProtKB/TrEMBL
Pfam zf-A20 UniProtKB/TrEMBL
  zf-AN1 UniProtKB/TrEMBL
PROSITE ZF_A20 UniProtKB/TrEMBL
  ZF_AN1 UniProtKB/TrEMBL
SMART ZnF_A20 UniProtKB/TrEMBL
  ZnF_AN1 UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
  SSF118310 UniProtKB/TrEMBL
UniProt A0A4X1W3U2 ENTREZGENE
  A0A8D0X2N9 ENTREZGENE, UniProtKB/TrEMBL
  A4U9C9 ENTREZGENE, UniProtKB/TrEMBL
  I3LS37 ENTREZGENE
UniProt Secondary A0A4X1W3U2 UniProtKB/TrEMBL
  I3LS37 UniProtKB/TrEMBL
VGNC ID VGNC:95137 ENTREZGENE