RELL1 (RELT like 1) - Rat Genome Database

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Gene: RELL1 (RELT like 1) Sus scrofa
Analyze
Symbol: RELL1
Name: RELT like 1
RGD ID: 14289747
Description: INVOLVED IN positive regulation of p38MAPK cascade (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN membrane (inferred); microtubule cytoskeleton (inferred); plasma membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RELT-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl829,118,514 - 29,190,565 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1829,118,511 - 29,190,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2830,533,593 - 30,568,840 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
RELL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl829,118,514 - 29,190,565 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1829,118,511 - 29,190,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2830,533,593 - 30,568,840 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RELL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38437,586,304 - 37,686,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl437,590,800 - 37,686,376 (-)EnsemblGRCh38hg38GRCh38
GRCh37437,592,426 - 37,687,998 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36437,268,817 - 37,364,394 (-)NCBINCBI36Build 36hg18NCBI36
Celera438,031,897 - 38,127,507 (-)NCBICelera
Cytogenetic Map4p14NCBI
HuRef436,916,955 - 37,012,394 (-)NCBIHuRef
CHM1_1437,591,419 - 37,687,547 (-)NCBICHM1_1
T2T-CHM13v2.0437,559,941 - 37,655,575 (-)NCBIT2T-CHM13v2.0
Rell1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39564,047,296 - 64,126,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl564,066,240 - 64,126,240 (-)EnsemblGRCm39 Ensembl
GRCm38563,889,337 - 63,969,020 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl563,908,897 - 63,968,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv37564,300,137 - 64,360,136 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36564,188,667 - 64,248,001 (-)NCBIMGSCv36mm8
Celera561,200,867 - 61,260,171 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map532.8NCBI
Rell1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81444,672,121 - 44,732,081 (+)NCBIGRCr8
mRatBN7.21444,318,640 - 44,378,541 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1444,303,009 - 44,378,500 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1444,681,475 - 44,730,263 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01445,981,404 - 46,030,193 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01444,461,557 - 44,510,341 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01445,982,244 - 46,041,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1445,982,244 - 46,041,866 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01445,787,180 - 45,847,126 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41447,179,973 - 47,229,627 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11447,185,966 - 47,200,193 (-)NCBI
Celera1443,460,106 - 43,515,377 (+)NCBICelera
Cytogenetic Map14p11NCBI
Rell1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554439,460,682 - 9,526,986 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554439,461,570 - 9,526,986 (+)NCBIChiLan1.0ChiLan1.0
RELL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2337,799,868 - 37,873,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1437,992,302 - 38,066,195 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0431,939,962 - 32,013,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1437,798,632 - 37,869,421 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl437,798,632 - 37,869,421 (-)Ensemblpanpan1.1panPan2
RELL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1374,493,133 - 74,555,976 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl374,489,571 - 74,554,086 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha377,040,360 - 77,103,166 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0375,274,403 - 75,336,739 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1374,540,353 - 74,603,128 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0374,687,392 - 74,750,146 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0375,065,069 - 75,128,089 (+)NCBIUU_Cfam_GSD_1.0
Rell1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528540,602,899 - 40,670,798 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364825,625,349 - 5,695,360 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364825,626,563 - 5,695,320 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RELL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12712,602,526 - 12,673,000 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2712,602,540 - 12,676,013 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604759,017,806 - 59,097,774 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rell1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248406,207,394 - 6,268,205 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248406,207,560 - 6,268,193 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RELL1
3282 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 3 3 1 6 1 3
Low 2 4 2 1 17 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000009597   ⟹   ENSSSCP00000009350
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl829,118,514 - 29,190,565 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000088909   ⟹   ENSSSCP00000062119
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl829,118,514 - 29,190,492 (-)Ensembl
RefSeq Acc Id: XM_013978589   ⟹   XP_013834043
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1829,118,511 - 29,190,591 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013834043   ⟸   XM_013978589
- UniProtKB: A0A8D0VZE3 (UniProtKB/TrEMBL),   F1S4K9 (UniProtKB/TrEMBL),   A0A4X1V871 (UniProtKB/TrEMBL),   A0A8D1VYQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000062119   ⟸   ENSSSCT00000088909
RefSeq Acc Id: ENSSSCP00000009350   ⟸   ENSSSCT00000009597


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008772 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015008737 UniProtKB/TrEMBL
  ENSSSCG00025050229 UniProtKB/TrEMBL
  ENSSSCG00030020263 UniProtKB/TrEMBL
  ENSSSCG00035015339 UniProtKB/TrEMBL
  ENSSSCG00045038418 UniProtKB/TrEMBL
  ENSSSCG00055010528 UniProtKB/TrEMBL
  ENSSSCG00060053069 UniProtKB/TrEMBL
  ENSSSCG00070022119 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009597 ENTREZGENE
  ENSSSCT00000009597.4 UniProtKB/TrEMBL
  ENSSSCT00000088909.1 UniProtKB/TrEMBL
  ENSSSCT00015011532.1 UniProtKB/TrEMBL
  ENSSSCT00015011595.1 UniProtKB/TrEMBL
  ENSSSCT00025068541.1 UniProtKB/TrEMBL
  ENSSSCT00025068638.1 UniProtKB/TrEMBL
  ENSSSCT00030028025.1 UniProtKB/TrEMBL
  ENSSSCT00030028036.1 UniProtKB/TrEMBL
  ENSSSCT00035019521.1 UniProtKB/TrEMBL
  ENSSSCT00035019528.1 UniProtKB/TrEMBL
  ENSSSCT00045066625.1 UniProtKB/TrEMBL
  ENSSSCT00045066635.1 UniProtKB/TrEMBL
  ENSSSCT00045066653.1 UniProtKB/TrEMBL
  ENSSSCT00045066667.1 UniProtKB/TrEMBL
  ENSSSCT00045066678.1 UniProtKB/TrEMBL
  ENSSSCT00055020584.1 UniProtKB/TrEMBL
  ENSSSCT00055020610.1 UniProtKB/TrEMBL
  ENSSSCT00055020642.1 UniProtKB/TrEMBL
  ENSSSCT00055020671.1 UniProtKB/TrEMBL
  ENSSSCT00060072249.1 UniProtKB/TrEMBL
  ENSSSCT00070043994.1 UniProtKB/TrEMBL
  ENSSSCT00070043998.1 UniProtKB/TrEMBL
InterPro RELL1 UniProtKB/TrEMBL
  TNF_rcpt_RELT UniProtKB/TrEMBL
NCBI Gene RELL1 ENTREZGENE
PANTHER PTHR31037 UniProtKB/TrEMBL
  RELT-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam RELT UniProtKB/TrEMBL
UniProt A0A4X1V756_PIG UniProtKB/TrEMBL
  A0A4X1V871 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QC48_PIG UniProtKB/TrEMBL
  A0A8D0VZE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CMP8_PIG UniProtKB/TrEMBL
  A0A8D1J9K6_PIG UniProtKB/TrEMBL
  A0A8D1JJ44_PIG UniProtKB/TrEMBL
  A0A8D1Q5W0_PIG UniProtKB/TrEMBL
  A0A8D1TZU0_PIG UniProtKB/TrEMBL
  A0A8D1VYQ4 ENTREZGENE, UniProtKB/TrEMBL
  F1S4K9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92206 ENTREZGENE