NUDT15 (nudix hydrolase 15) - Rat Genome Database

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Gene: NUDT15 (nudix hydrolase 15) Sus scrofa
Analyze
Symbol: NUDT15
Name: nudix hydrolase 15
RGD ID: 14288412
Description: ENCODES a protein that exhibits nucleoside-diphosphatase activity (ortholog); nucleoside-triphosphate diphosphatase activity (ortholog); INVOLVED IN DNA protection (ortholog); nucleoside phosphate catabolic process (ortholog); purine deoxyribonucleoside triphosphate catabolic process (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); intellectual disability (ortholog); Poor Metabolism of Thiopurines, 2 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOW QUALITY PROTEIN: nucleotide triphosphate diphosphatase NUDT15
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1119,572,644 - 19,584,538 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11119,572,963 - 19,584,565 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21120,025,215 - 20,037,485 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
NUDT15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1119,572,644 - 19,584,538 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11119,572,963 - 19,584,565 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21120,025,215 - 20,037,485 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUDT15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1348,037,726 - 48,047,221 (+)EnsemblGRCh38hg38GRCh38
GRCh381348,037,726 - 48,052,755 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371348,611,862 - 48,626,891 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361347,509,704 - 47,519,283 (+)NCBINCBI36hg18NCBI36
Build 341347,509,703 - 47,519,283NCBI
Celera1329,666,454 - 29,676,033 (+)NCBI
Cytogenetic Map13q14.2NCBI
HuRef1329,404,604 - 29,414,174 (+)NCBIHuRef
CHM1_11348,579,420 - 48,589,016 (+)NCBICHM1_1
Nudt15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391473,756,320 - 73,785,682 (-)NCBIGRCm39mm39
GRCm39 Ensembl1473,756,317 - 73,785,682 (-)Ensembl
GRCm381473,518,880 - 73,548,242 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1473,518,877 - 73,548,242 (-)EnsemblGRCm38mm10GRCm38
MGSCv371473,919,671 - 73,948,049 (-)NCBIGRCm37mm9NCBIm37
MGSCv361472,254,019 - 72,282,397 (-)NCBImm8
Celera259,869,585 - 59,872,692 (+)NCBICelera
Cytogenetic Map14D3NCBI
Nudt15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21548,707,776 - 48,747,363 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1548,709,700 - 48,747,363 (-)Ensembl
Rnor_6.01555,417,774 - 55,456,698 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1555,419,502 - 55,456,698 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01559,139,985 - 59,178,909 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41554,171,542 - 54,209,265 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11554,187,267 - 54,191,468 (-)NCBI
Celera1548,358,114 - 48,395,646 (-)NCBICelera
Cytogenetic Map15q11NCBI
Nudt15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554311,767,525 - 1,775,555 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554311,767,971 - 1,775,555 (+)NCBIChiLan1.0ChiLan1.0
NUDT15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11347,891,558 - 47,900,977 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1347,891,557 - 47,900,971 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01329,189,459 - 29,198,825 (+)NCBIMhudiblu_PPA_v0panPan3
NUDT15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1223,416,702 - 3,424,607 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl223,416,578 - 3,424,409 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha223,445,175 - 3,453,057 (-)NCBI
ROS_Cfam_1.0223,530,619 - 3,538,511 (-)NCBI
UMICH_Zoey_3.1223,315,298 - 3,323,228 (-)NCBI
UNSW_CanFamBas_1.0223,378,543 - 3,386,433 (-)NCBI
UU_Cfam_GSD_1.0223,383,421 - 3,391,341 (-)NCBI
Nudt15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945157,897,573 - 157,905,976 (+)NCBI
SpeTri2.0NW_0049365651,380,981 - 1,389,908 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUDT15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1325,966,148 - 25,974,143 (+)NCBI
ChlSab1.1 Ensembl325,966,876 - 25,973,647 (+)Ensembl
Vero_WHO_p1.0NW_02366605717,957,744 - 17,993,065 (-)NCBI
Nudt15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247486,807,667 - 6,824,477 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 3 3 2 15 1 1
Low 9 3 2 8 2 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000023371   ⟹   ENSSSCP00000021382
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1119,572,644 - 19,584,528 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039736   ⟹   ENSSSCP00000057189
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1119,573,609 - 19,584,538 (-)Ensembl
RefSeq Acc Id: XM_013978735   ⟹   XP_013834189
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11119,572,963 - 19,584,565 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013834189 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013834189   ⟸   XM_013978735
- Sequence:
RefSeq Acc Id: ENSSSCP00000057189   ⟸   ENSSSCT00000039736
RefSeq Acc Id: ENSSSCP00000021382   ⟸   ENSSSCT00000023371
Protein Domains
Nudix hydrolase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027551 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070000792 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000021382 UniProtKB/TrEMBL
  ENSSSCP00000057189 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070001295 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023371 UniProtKB/TrEMBL
  ENSSSCT00000039736 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070001507 UniProtKB/TrEMBL
InterPro NUDIX_hydrolase-like_dom_sf UniProtKB/TrEMBL
  NUDIX_hydrolase_dom UniProtKB/TrEMBL
KEGG Report ssc:100621855 UniProtKB/TrEMBL
NCBI Gene NUDT15 ENTREZGENE
Pfam NUDIX UniProtKB/TrEMBL
PROSITE NUDIX UniProtKB/TrEMBL
Superfamily-SCOP SSF55811 UniProtKB/TrEMBL
UniProt A0A287BM97_PIG UniProtKB/TrEMBL
  A0A480PVW7_PIG UniProtKB/TrEMBL
  A0A4X1SGL2_PIG UniProtKB/TrEMBL
  I3LBG2_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90956 ENTREZGENE