UCMA (upper zone of growth plate and cartilage matrix associated) - Rat Genome Database

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Gene: UCMA (upper zone of growth plate and cartilage matrix associated) Sus scrofa
Analyze
Symbol: UCMA
Name: upper zone of growth plate and cartilage matrix associated
RGD ID: 14288367
Description: ENCODES a protein that exhibits BMP binding (inferred); INVOLVED IN negative regulation of osteoblast differentiation (ortholog); osteoblast differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hypoparathyroidism-deafness-renal disease syndrome (ortholog); FOUND IN cytoplasm (inferred); extracellular matrix (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: unique cartilage matrix-associated protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1048,460,688 - 48,471,286 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11048,460,713 - 48,471,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
UCMA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1048,460,688 - 48,471,286 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11048,460,713 - 48,471,213 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UCMA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381013,221,766 - 13,234,374 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1013,221,766 - 13,234,374 (-)EnsemblGRCh38hg38GRCh38
GRCh371013,263,766 - 13,276,374 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361013,303,773 - 13,316,337 (-)NCBINCBI36Build 36hg18NCBI36
Build 341013,303,776 - 13,316,334NCBI
Celera1013,190,573 - 13,203,144 (-)NCBICelera
Cytogenetic Map10p13NCBI
HuRef1013,176,375 - 13,188,935 (-)NCBIHuRef
CHM1_11013,262,072 - 13,274,644 (-)NCBICHM1_1
T2T-CHM13v2.01013,234,493 - 13,247,115 (-)NCBIT2T-CHM13v2.0
Ucma
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3924,980,933 - 4,990,559 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl24,980,933 - 4,990,559 (+)EnsemblGRCm39 Ensembl
GRCm3824,976,122 - 4,985,748 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl24,976,122 - 4,985,748 (+)EnsemblGRCm38mm10GRCm38
MGSCv3724,897,168 - 4,906,794 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3624,893,453 - 4,903,017 (+)NCBIMGSCv36mm8
Celera24,931,464 - 4,941,091 (+)NCBICelera
Cytogenetic Map2A1NCBI
cM Map23.11NCBI
Ucma
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81778,203,268 - 78,212,996 (-)NCBIGRCr8
mRatBN7.21773,293,977 - 73,303,709 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1773,293,978 - 73,303,611 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1776,799,629 - 76,809,187 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01780,624,472 - 80,634,033 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01774,674,937 - 74,684,661 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01777,252,099 - 77,262,301 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1777,252,100 - 77,261,731 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01778,918,188 - 78,928,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41784,382,363 - 84,391,442 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11784,392,858 - 84,402,835 (-)NCBI
Celera1772,735,095 - 72,743,900 (-)NCBICelera
Cytogenetic Map17q12.3NCBI
Ucma
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554621,195,608 - 1,204,266 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554621,195,738 - 1,204,255 (-)NCBIChiLan1.0ChiLan1.0
UCMA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2825,744,370 - 25,760,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11025,749,698 - 25,765,845 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01013,223,897 - 13,237,230 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11013,196,867 - 13,209,494 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1013,196,867 - 13,209,494 (-)Ensemblpanpan1.1panPan2
UCMA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1223,287,410 - 23,307,116 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl223,287,551 - 23,298,035 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha220,297,501 - 20,332,302 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0223,655,405 - 23,675,094 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl223,655,542 - 23,666,026 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1220,783,643 - 20,818,443 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0221,626,373 - 21,661,159 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,342,820 - 22,377,626 (+)NCBIUU_Cfam_GSD_1.0
LOC101955357
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093442,803,945 - 2,812,485 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936862404,476 - 413,561 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936862405,205 - 413,920 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UCMA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1913,262,924 - 13,276,091 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl913,263,264 - 13,275,328 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605118,791,584 - 18,805,491 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ucma
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248055,775,019 - 5,781,957 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248055,775,019 - 5,781,957 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in UCMA
106 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system hemolymphoid system nervous system reproductive system respiratory system
High
Medium 5
Low 1 12 1 1
Below cutoff 4 1 1 3 1

Sequence


RefSeq Acc Id: ENSSSCT00000042324   ⟹   ENSSSCP00000039194
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1048,460,814 - 48,471,286 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000054651   ⟹   ENSSSCP00000047379
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1048,460,688 - 48,471,286 (+)Ensembl
RefSeq Acc Id: XM_021064863   ⟹   XP_020920522
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11048,460,713 - 48,471,213 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021064864   ⟹   XP_020920523
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11048,460,713 - 48,471,213 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020920522   ⟸   XM_021064863
- Peptide Label: isoform X1
- UniProtKB: A0A287ATG1 (UniProtKB/TrEMBL),   A0A8D1N4R8 (UniProtKB/TrEMBL),   A0A4X1VX81 (UniProtKB/TrEMBL),   A0A8D1UHU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920523   ⟸   XM_021064864
- Peptide Label: isoform X2
- UniProtKB: A0A4X1VX81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000047379   ⟸   ENSSSCT00000054651
RefSeq Acc Id: ENSSSCP00000039194   ⟸   ENSSSCT00000042324


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038864 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032614 UniProtKB/TrEMBL
  ENSSSCG00025055562 UniProtKB/TrEMBL
  ENSSSCG00030031706 UniProtKB/TrEMBL
  ENSSSCG00035044748 UniProtKB/TrEMBL
  ENSSSCG00050059419 UniProtKB/TrEMBL
  ENSSSCG00055003138 UniProtKB/TrEMBL
  ENSSSCG00060010807 UniProtKB/TrEMBL
  ENSSSCG00065050416 UniProtKB/TrEMBL
  ENSSSCG00070027332 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042324.3 UniProtKB/TrEMBL
  ENSSSCT00000054651 ENTREZGENE
  ENSSSCT00000054651.3 UniProtKB/TrEMBL
  ENSSSCT00005052164.1 UniProtKB/TrEMBL
  ENSSSCT00025076163.1 UniProtKB/TrEMBL
  ENSSSCT00030043932.1 UniProtKB/TrEMBL
  ENSSSCT00035059455.1 UniProtKB/TrEMBL
  ENSSSCT00050080940.1 UniProtKB/TrEMBL
  ENSSSCT00055006088.1 UniProtKB/TrEMBL
  ENSSSCT00060014066.1 UniProtKB/TrEMBL
  ENSSSCT00065069069.1 UniProtKB/TrEMBL
  ENSSSCT00070054828.1 UniProtKB/TrEMBL
  ENSSSCT00070054829.1 UniProtKB/TrEMBL
InterPro UCMA UniProtKB/TrEMBL
NCBI Gene UCMA ENTREZGENE
PANTHER PTHR28647 UniProtKB/TrEMBL
  UNIQUE CARTILAGE MATRIX-ASSOCIATED PROTEIN UniProtKB/TrEMBL
Pfam UCMA UniProtKB/TrEMBL
UniProt A0A287A5H4_PIG UniProtKB/TrEMBL
  A0A287ATG1 ENTREZGENE
  A0A4X1VX81 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VXY3_PIG UniProtKB/TrEMBL
  A0A8D1N4R8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1UHU1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287ATG1 UniProtKB/TrEMBL
VGNC ID VGNC:96068 ENTREZGENE