SPATA2 (spermatogenesis associated 2) - Rat Genome Database

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Gene: SPATA2 (spermatogenesis associated 2) Sus scrofa
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Symbol: SPATA2
Name: spermatogenesis associated 2 (Ensembl:spermatosis associated 2)
RGD ID: 14287585
Description: ENCODES a protein that exhibits protein-containing complex binding (inferred); signaling receptor complex adaptor activity (inferred); ubiquitin-specific protease binding (inferred); INVOLVED IN necroptotic process (ortholog); seminiferous tubule development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred); fibrillar center (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: spermatogenesis-associated protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,489,701 - 51,500,669 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,489,696 - 51,500,900 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
fibrillar center  (IEA)
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
SPATA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1751,489,701 - 51,500,669 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11751,489,696 - 51,500,900 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SPATA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382049,903,391 - 49,915,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2049,903,391 - 49,915,529 (-)EnsemblGRCh38hg38GRCh38
GRCh372048,519,928 - 48,532,066 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362047,953,335 - 47,965,475 (-)NCBINCBI36Build 36hg18NCBI36
Build 342047,953,337 - 47,965,475NCBI
Celera2045,224,519 - 45,236,653 (-)NCBICelera
Cytogenetic Map20q13.13NCBI
HuRef2045,269,043 - 45,281,171 (-)NCBIHuRef
CHM1_12048,424,471 - 48,436,626 (-)NCBICHM1_1
T2T-CHM13v2.02051,672,830 - 51,685,863 (-)NCBIT2T-CHM13v2.0
Spata2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,323,053 - 167,334,804 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2167,323,053 - 167,334,807 (-)EnsemblGRCm39 Ensembl
GRCm382167,481,136 - 167,493,238 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2167,481,133 - 167,492,887 (-)EnsemblGRCm38mm10GRCm38
MGSCv372167,306,636 - 167,318,374 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362167,172,600 - 167,184,068 (-)NCBIMGSCv36mm8
Celera2173,423,092 - 173,434,830 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map287.23NCBI
Spata2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83176,621,974 - 176,639,784 (-)NCBIGRCr8
mRatBN7.23156,202,962 - 156,213,283 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3156,202,967 - 156,211,705 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3159,999,560 - 160,007,957 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03168,498,614 - 168,507,011 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03166,240,308 - 166,248,705 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03164,229,211 - 164,239,483 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,230,852 - 164,239,250 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03170,379,958 - 170,390,225 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43158,632,425 - 158,640,824 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13158,538,461 - 158,546,860 (-)NCBI
Celera3154,784,243 - 154,792,642 (-)NCBICelera
Cytogenetic Map3q42NCBI
Spata2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554458,281,545 - 8,292,951 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554458,281,280 - 8,292,951 (+)NCBIChiLan1.0ChiLan1.0
SPATA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22155,649,232 - 55,662,902 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12055,643,744 - 55,655,402 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02046,245,560 - 46,257,656 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12047,307,731 - 47,320,315 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2047,307,731 - 47,320,343 (-)Ensemblpanpan1.1panPan2
SPATA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12436,443,856 - 36,454,264 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2436,445,870 - 36,448,585 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2435,685,192 - 35,695,734 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02437,147,635 - 37,158,176 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2437,147,642 - 37,158,050 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12436,389,022 - 36,399,560 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02436,522,317 - 36,532,852 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02437,065,662 - 37,076,202 (-)NCBIUU_Cfam_GSD_1.0
Spata2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640189,052,342 - 189,059,401 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365144,508,837 - 4,513,264 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365144,506,015 - 4,513,040 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPATA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1214,074,761 - 14,087,322 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl214,075,621 - 14,087,350 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605062,554,506 - 62,566,885 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spata2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247905,553,082 - 5,572,250 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SPATA2
52 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 9 4 3 5 2 22 2 3 3
Below cutoff 1

Sequence


RefSeq Acc Id: ENSSSCT00000059114   ⟹   ENSSSCP00000048332
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1751,489,701 - 51,500,669 (-)Ensembl
RefSeq Acc Id: XM_021077958   ⟹   XP_020933617
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11751,489,696 - 51,500,519 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077959   ⟹   XP_020933618
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11751,489,696 - 51,500,900 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077960   ⟹   XP_020933619
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11751,489,696 - 51,500,713 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020933618   ⟸   XM_021077959
- UniProtKB: A0A286ZI91 (UniProtKB/TrEMBL),   A0A4X1UI81 (UniProtKB/TrEMBL),   A0A0B8RVG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933619   ⟸   XM_021077960
- UniProtKB: A0A286ZI91 (UniProtKB/TrEMBL),   A0A4X1UI81 (UniProtKB/TrEMBL),   A0A0B8RVG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933617   ⟸   XM_021077958
- UniProtKB: A0A286ZI91 (UniProtKB/TrEMBL),   A0A4X1UI81 (UniProtKB/TrEMBL),   A0A0B8RVG9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000048332   ⟸   ENSSSCT00000059114

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033324 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015001769 UniProtKB/TrEMBL
  ENSSSCG00025076767 UniProtKB/TrEMBL
  ENSSSCG00030004480 UniProtKB/TrEMBL
  ENSSSCG00035026745 UniProtKB/TrEMBL
  ENSSSCG00040034181 UniProtKB/TrEMBL
  ENSSSCG00045003856 UniProtKB/TrEMBL
  ENSSSCG00050077079 UniProtKB/TrEMBL
  ENSSSCG00055025883 UniProtKB/TrEMBL
  ENSSSCG00060005866 UniProtKB/TrEMBL
  ENSSSCG00065076031 UniProtKB/TrEMBL
  ENSSSCG00070017520 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000059114 ENTREZGENE
  ENSSSCT00000059114.3 UniProtKB/TrEMBL
  ENSSSCT00015002134.1 UniProtKB/TrEMBL
  ENSSSCT00025106438.1 UniProtKB/TrEMBL
  ENSSSCT00030005968.1 UniProtKB/TrEMBL
  ENSSSCT00035035298.1 UniProtKB/TrEMBL
  ENSSSCT00040045995.1 UniProtKB/TrEMBL
  ENSSSCT00045006391.1 UniProtKB/TrEMBL
  ENSSSCT00050106032.1 UniProtKB/TrEMBL
  ENSSSCT00055051099.1 UniProtKB/TrEMBL
  ENSSSCT00060007419.1 UniProtKB/TrEMBL
  ENSSSCT00065104984.1 UniProtKB/TrEMBL
  ENSSSCT00070034591.1 UniProtKB/TrEMBL
  ENSSSCT00070034597.1 UniProtKB/TrEMBL
  ENSSSCT00070034607.1 UniProtKB/TrEMBL
  ENSSSCT00070034610.1 UniProtKB/TrEMBL
  ENSSSCT00070034613.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.2190 UniProtKB/TrEMBL
InterPro SPATA2_PUB-like UniProtKB/TrEMBL
NCBI Gene SPATA2 ENTREZGENE
PANTHER PTHR15326:SF8 UniProtKB/TrEMBL
  SPERMATOGENESIS-ASSOCIATED PROTEIN 2/TAMOZHENNIC UniProtKB/TrEMBL
Pfam SPATA2_PUB-like UniProtKB/TrEMBL
UniProt A0A0B8RVG9 ENTREZGENE
  A0A286ZI91 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UI81 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95628 ENTREZGENE