SLC25A13 (solute carrier family 25 member 13) - Rat Genome Database
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Gene: SLC25A13 (solute carrier family 25 member 13) Sus scrofa
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Symbol: SLC25A13
Name: solute carrier family 25 member 13
RGD ID: 14287278
Description: ENCODES a protein that exhibits L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); cellular respiration (ortholog); malate-aspartate shuttle (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH adult-onset type II citrullinemia (ortholog); Bone Fractures (ortholog); citrullinemia (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: calcium-binding mitochondrial carrier protein Aralar2; solute carrier family 25 (aspartate/glutamate carrier), member 13 tv2; solute carrier family 25, member 13 (citrin)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl975,754,392 - 76,349,242 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1975,781,421 - 75,980,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2983,193,939 - 83,393,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SLC25A13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl975,754,392 - 76,349,242 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1975,781,421 - 75,980,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2983,193,939 - 83,393,704 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC25A13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl796,120,220 - 96,322,147 (-)EnsemblGRCh38hg38GRCh38
GRCh38796,120,220 - 96,322,127 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37795,749,532 - 95,951,459 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh37795,749,532 - 95,951,410 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36795,587,468 - 95,789,341 (-)NCBINCBI36hg18NCBI36
Build 34795,394,183 - 95,596,056NCBI
Celera790,449,390 - 90,651,529 (-)NCBI
Cytogenetic Map7q21.3NCBI
HuRef790,357,333 - 90,559,663 (-)NCBIHuRef
CHM1_1795,679,529 - 95,881,481 (-)NCBICHM1_1
CRA_TCAGchr7v2795,078,578 - 95,280,528 (-)NCBI
Slc25a13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3966,041,218 - 6,217,304 (-)NCBIGRCm39mm39
GRCm3866,041,218 - 6,217,304 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl66,041,218 - 6,217,173 (-)EnsemblGRCm38mm10GRCm38
MGSCv3765,991,218 - 6,167,173 (-)NCBIGRCm37mm9NCBIm37
MGSCv3665,991,218 - 6,167,118 (-)NCBImm8
Celera66,191,941 - 6,368,691 (-)NCBICelera
Cytogenetic Map6A1NCBI
Slc25a13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2434,179,224 - 34,361,912 (-)NCBI
Rnor_6.0 Ensembl431,608,269 - 31,730,386 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0431,134,165 - 31,757,006 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0431,476,115 - 31,624,950 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0431,041,075 - 31,053,633 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4430,822,456 - 31,006,241 (-)NCBIRGSC3.4rn4RGSC3.4
Celera429,703,579 - 29,885,288 (-)NCBICelera
Cytogenetic Map4q13-q21NCBI
Slc25a13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543212,684,596 - 12,826,667 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543212,685,253 - 12,788,307 (-)NCBIChiLan1.0ChiLan1.0
SLC25A13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17101,658,507 - 101,859,587 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7101,658,507 - 101,859,587 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0788,072,139 - 88,273,470 (-)NCBIMhudiblu_PPA_v0panPan3
SLC25A13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1421,296,512 - 21,482,236 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11421,295,651 - 21,481,767 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Slc25a13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365854,061,297 - 4,215,912 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC25A13
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12152,728,251 - 52,929,685 (+)NCBI
ChlSab1.1 Ensembl2152,729,558 - 52,930,021 (+)Ensembl
Slc25a13
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248132,851,620 - 3,019,593 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 6 1 12 2 2
Low 4 4 3 4 2 11 1 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000016709   ⟹   ENSSSCP00000016263
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,782,390 - 75,980,518 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000041734   ⟹   ENSSSCP00000044688
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,754,392 - 75,980,518 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000046151   ⟹   ENSSSCP00000032022
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,781,429 - 75,980,489 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065631   ⟹   ENSSSCP00000034404
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,754,392 - 75,980,518 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000066333   ⟹   ENSSSCP00000051579
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,782,320 - 75,937,309 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000069430   ⟹   ENSSSCP00000068280
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,754,392 - 75,956,466 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000073836   ⟹   ENSSSCP00000068541
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,754,392 - 75,937,309 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076251   ⟹   ENSSSCP00000059960
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,754,392 - 76,349,242 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000078002   ⟹   ENSSSCP00000061690
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl975,754,392 - 75,876,510 (-)Ensembl
RefSeq Acc Id: XM_003130160   ⟹   XP_003130208
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1975,781,421 - 75,980,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005667626   ⟹   XP_005667683
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1975,781,421 - 75,980,499 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102398   ⟹   XP_020958057
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1975,781,421 - 75,955,277 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102399   ⟹   XP_020958058
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1975,781,421 - 75,955,277 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102400   ⟹   XP_020958059
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1975,781,421 - 75,949,017 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102401   ⟹   XP_020958060
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1975,781,421 - 75,949,828 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021102403   ⟹   XP_020958062
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1975,781,421 - 75,980,517 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_003130208   ⟸   XM_003130160
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_020958062   ⟸   XM_021102403
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005667683   ⟸   XM_005667626
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020958058   ⟸   XM_021102399
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020958057   ⟸   XM_021102398
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020958060   ⟸   XM_021102401
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_020958059   ⟸   XM_021102400
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSSSCP00000068541   ⟸   ENSSSCT00000073836
RefSeq Acc Id: ENSSSCP00000061690   ⟸   ENSSSCT00000078002
RefSeq Acc Id: ENSSSCP00000034404   ⟸   ENSSSCT00000065631
RefSeq Acc Id: ENSSSCP00000016263   ⟸   ENSSSCT00000016709
RefSeq Acc Id: ENSSSCP00000044688   ⟸   ENSSSCT00000041734
RefSeq Acc Id: ENSSSCP00000068280   ⟸   ENSSSCT00000069430
RefSeq Acc Id: ENSSSCP00000051579   ⟸   ENSSSCT00000066333
RefSeq Acc Id: ENSSSCP00000059960   ⟸   ENSSSCT00000076251
RefSeq Acc Id: ENSSSCP00000032022   ⟸   ENSSSCT00000046151
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015336 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070011553 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000016263 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000032022 UniProtKB/TrEMBL
  ENSSSCP00000034404 UniProtKB/TrEMBL
  ENSSSCP00000044688 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000051579 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000059960 UniProtKB/TrEMBL
  ENSSSCP00000061690 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000068280 UniProtKB/TrEMBL
  ENSSSCP00000068541 UniProtKB/TrEMBL
  ENSSSCP00070018655 UniProtKB/TrEMBL
  ENSSSCP00070018682 UniProtKB/TrEMBL
  ENSSSCP00070018707 UniProtKB/TrEMBL
  ENSSSCP00070018718 UniProtKB/TrEMBL
  ENSSSCP00070018723 UniProtKB/TrEMBL
  ENSSSCP00070018741 UniProtKB/TrEMBL
  ENSSSCP00070018747 UniProtKB/TrEMBL
  ENSSSCP00070018752 UniProtKB/TrEMBL
  ENSSSCP00070018757 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016709 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000041734 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000046151 UniProtKB/TrEMBL
  ENSSSCT00000065631 UniProtKB/TrEMBL
  ENSSSCT00000066333 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000069430 UniProtKB/TrEMBL
  ENSSSCT00000073836 UniProtKB/TrEMBL
  ENSSSCT00000076251 UniProtKB/TrEMBL
  ENSSSCT00000078002 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070022537 UniProtKB/TrEMBL
  ENSSSCT00070022565 UniProtKB/TrEMBL
  ENSSSCT00070022604 UniProtKB/TrEMBL
  ENSSSCT00070022624 UniProtKB/TrEMBL
  ENSSSCT00070022631 UniProtKB/TrEMBL
  ENSSSCT00070022652 UniProtKB/TrEMBL
  ENSSSCT00070022659 UniProtKB/TrEMBL
  ENSSSCT00070022665 UniProtKB/TrEMBL
  ENSSSCT00070022672 UniProtKB/TrEMBL
Gene3D-CATH 1.50.40.10 UniProtKB/TrEMBL
InterPro Aralar2 UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Mit_carrier UniProtKB/TrEMBL
  Mitochondrial_sb/sol_carrier UniProtKB/TrEMBL
  Mt_carrier_dom_sf UniProtKB/TrEMBL
KEGG Report ssc:100524162 UniProtKB/TrEMBL
NCBI Gene SLC25A13 ENTREZGENE
PANTHER PTHR45678:SF12 UniProtKB/TrEMBL
Pfam Mito_carr UniProtKB/TrEMBL
PRINTS MITOCARRIER UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
  SOLCAR UniProtKB/TrEMBL
Superfamily-SCOP SSF103506 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
UniProt A0A286ZKD4_PIG UniProtKB/TrEMBL
  A0A286ZRZ5_PIG UniProtKB/TrEMBL
  A0A287ALB9_PIG UniProtKB/TrEMBL
  A0A287B665_PIG UniProtKB/TrEMBL
  A0A4X1TR24_PIG UniProtKB/TrEMBL
  A0A4X1TR61_PIG UniProtKB/TrEMBL
  A0A4X1TR66_PIG UniProtKB/TrEMBL
  A0A4X1TTI1_PIG UniProtKB/TrEMBL
  A0A4X1TTP5_PIG UniProtKB/TrEMBL
  A0A4X1TTP9_PIG UniProtKB/TrEMBL
  A0A4X1TTV5_PIG UniProtKB/TrEMBL
  A0A4X1TTX5_PIG UniProtKB/TrEMBL
  A0A4X1TTY0_PIG UniProtKB/TrEMBL
  A0A5G2QD37_PIG UniProtKB/TrEMBL
  A0A5G2QU76_PIG UniProtKB/TrEMBL
  A0A5G2QUC7_PIG UniProtKB/TrEMBL
  A0A5G2QVV8_PIG UniProtKB/TrEMBL
  F1SF87_PIG UniProtKB/TrEMBL
  M3VH80_PIG UniProtKB/TrEMBL
VGNC ID VGNC:92992 ENTREZGENE