DUSP29 (dual specificity phosphatase 29) - Rat Genome Database

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Gene: DUSP29 (dual specificity phosphatase 29) Sus scrofa
Analyze
Symbol: DUSP29
Name: dual specificity phosphatase 29
RGD ID: 14285562
Description: ENCODES a protein that exhibits MAP kinase phosphatase activity (ortholog); protein tyrosine/serine/threonine phosphatase activity (ortholog); INVOLVED IN muscle cell differentiation (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH genetic disease (ortholog); Genitopatellar Syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dual specificity phosphatase and pro isomerase domain containing 1; Dual specificity phosphatase DUPD1; DUPD1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1477,602,871 - 77,643,114 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11477,602,871 - 77,643,109 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21483,728,094 - 83,768,026 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA,ISS)
nucleus  (IEA,ISS)
protein-containing complex  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
DUSP29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1477,602,871 - 77,643,114 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11477,602,871 - 77,643,109 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21483,728,094 - 83,768,026 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DUSP29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381075,037,472 - 75,073,642 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1075,037,472 - 75,073,642 (-)EnsemblGRCh38hg38GRCh38
GRCh371076,797,230 - 76,833,400 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361076,467,600 - 76,488,278 (-)NCBINCBI36Build 36hg18NCBI36
Celera1070,085,843 - 70,106,521 (-)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1070,796,168 - 70,816,830 (-)NCBIHuRef
CHM1_11077,079,339 - 77,100,017 (-)NCBICHM1_1
T2T-CHM13v2.01075,911,002 - 75,947,146 (-)NCBIT2T-CHM13v2.0
Dusp29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391421,726,605 - 21,764,644 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1421,726,605 - 21,764,644 (-)EnsemblGRCm39 Ensembl
GRCm381421,676,565 - 21,714,576 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1421,676,537 - 21,714,576 (-)EnsemblGRCm38mm10GRCm38
MGSCv371422,495,794 - 22,533,798 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361420,465,124 - 20,503,128 (-)NCBIMGSCv36mm8
Celera1418,059,519 - 18,097,591 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.82NCBI
Dusp29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8152,642,809 - 2,682,850 (+)NCBIGRCr8
mRatBN7.2152,593,473 - 2,634,019 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl152,593,578 - 2,633,503 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx152,600,319 - 2,640,195 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0153,986,768 - 4,026,642 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0152,599,117 - 2,638,989 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0152,766,929 - 2,806,573 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl152,766,710 - 2,806,536 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0152,747,987 - 2,787,603 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4152,648,702 - 2,688,973 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1152,648,703 - 2,688,616 (+)NCBI
Celera151,950,504 - 1,989,573 (-)NCBICelera
Cytogenetic Map15p16NCBI
Dusp29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543717,002,190 - 17,040,786 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543717,002,269 - 17,037,750 (+)NCBIChiLan1.0ChiLan1.0
DUSP29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2887,194,286 - 87,215,555 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11087,199,611 - 87,220,880 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01071,566,439 - 71,587,499 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11074,230,684 - 74,252,072 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1074,230,734 - 74,266,565 (-)Ensemblpanpan1.1panPan2
DUSP29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1425,307,786 - 25,341,772 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha425,443,089 - 25,475,662 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0425,590,511 - 25,623,040 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl425,590,877 - 25,623,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1425,485,685 - 25,518,247 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0425,686,330 - 25,718,866 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0426,041,770 - 26,074,362 (-)NCBIUU_Cfam_GSD_1.0
Dusp29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721355,774,753 - 55,812,762 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365214,267,613 - 4,305,563 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365214,267,619 - 4,305,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DUSP29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1956,299,535 - 56,335,745 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl956,300,105 - 56,335,764 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604816,802,988 - 16,823,552 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dusp29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247548,392,804 - 8,421,831 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247548,393,663 - 8,427,867 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DUSP29
1254 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system respiratory system
High
Medium 1
Low 1
Below cutoff 10 1 3 4 9 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000011294   ⟹   ENSSSCP00000011002
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1477,602,870 - 77,630,894 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000061263   ⟹   ENSSSCP00000031343
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1477,602,871 - 77,643,114 (-)Ensembl
RefSeq Acc Id: XM_001929033   ⟹   XP_001929068
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11477,602,871 - 77,643,109 (-)NCBI
Sequence:
RefSeq Acc Id: XP_001929068   ⟸   XM_001929033
- UniProtKB: A0A286ZIS3 (UniProtKB/TrEMBL),   A0A8D1S4C5 (UniProtKB/TrEMBL),   A0A480ZHK5 (UniProtKB/TrEMBL),   A0A8D1LXF3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000031343   ⟸   ENSSSCT00000061263
RefSeq Acc Id: ENSSSCP00000011002   ⟸   ENSSSCT00000011294

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010317 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015032815 UniProtKB/TrEMBL
  ENSSSCG00025077297 UniProtKB/TrEMBL
  ENSSSCG00030045084 UniProtKB/TrEMBL
  ENSSSCG00035026526 UniProtKB/TrEMBL
  ENSSSCG00040001329 UniProtKB/TrEMBL
  ENSSSCG00045015005 UniProtKB/TrEMBL
  ENSSSCG00050027217 UniProtKB/TrEMBL
  ENSSSCG00055027358 UniProtKB/TrEMBL
  ENSSSCG00060006597 UniProtKB/TrEMBL
  ENSSSCG00065001538 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000061263 ENTREZGENE
  ENSSSCT00000061263.3 UniProtKB/TrEMBL
  ENSSSCT00015043456.1 UniProtKB/TrEMBL
  ENSSSCT00025107378.1 UniProtKB/TrEMBL
  ENSSSCT00030062886.1 UniProtKB/TrEMBL
  ENSSSCT00035035004.1 UniProtKB/TrEMBL
  ENSSSCT00040001566.1 UniProtKB/TrEMBL
  ENSSSCT00045025518.1 UniProtKB/TrEMBL
  ENSSSCT00050036617.1 UniProtKB/TrEMBL
  ENSSSCT00055054131.1 UniProtKB/TrEMBL
  ENSSSCT00060008385.1 UniProtKB/TrEMBL
  ENSSSCT00065001903.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Atypical_DUSP_famA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dual-sp_phosphatase_cat-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:100155430 UniProtKB/TrEMBL
NCBI Gene DUPD1 ENTREZGENE
PANTHER DUAL SPECIFICITY PHOSPHATASE 29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45682 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DSPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS ADSPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ADSPHPHTASEA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DSPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286ZIS3 ENTREZGENE, UniProtKB/TrEMBL
  A0A480ZHK5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1LXF3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1S4C5 ENTREZGENE, UniProtKB/TrEMBL
  DUPD1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:87473 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-03 DUSP29  dual specificity phosphatase 29  DUPD1  dual specificity phosphatase and pro isomerase domain containing 1  Symbol and/or name change 19259463 PROVISIONAL