TSPO2 (translocator protein 2) - Rat Genome Database
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Gene: TSPO2 (translocator protein 2) Sus scrofa
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Symbol: TSPO2
Name: translocator protein 2
RGD ID: 14284577
Description: ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN enucleate erythrocyte differentiation (ortholog); import across plasma membrane (ortholog); intracellular cholesterol transport (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,347,060 - 36,352,495 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,347,027 - 36,352,497 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2741,643,850 - 41,650,992 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
TSPO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,347,060 - 36,352,495 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,347,027 - 36,352,497 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2741,643,850 - 41,650,992 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSPO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl641,042,467 - 41,044,337 (+)EnsemblGRCh38hg38GRCh38
GRCh38641,041,344 - 41,044,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37641,010,206 - 41,012,076 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,118,271 - 41,120,054 (+)NCBINCBI36hg18NCBI36
Celera642,562,918 - 42,564,757 (+)NCBI
Cytogenetic Map6p21.1NCBI
HuRef640,728,196 - 40,730,035 (+)NCBIHuRef
CHM1_1641,012,743 - 41,014,582 (+)NCBICHM1_1
Tspo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,754,970 - 48,758,592 (-)NCBIGRCm39mm39
GRCm39 Ensembl1748,754,935 - 48,758,550 (-)Ensembl
GRCm381748,447,942 - 48,451,564 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1748,447,907 - 48,451,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv371748,587,760 - 48,590,826 (-)NCBIGRCm37mm9NCBIm37
MGSCv361747,914,002 - 47,917,068 (-)NCBImm8
Celera1751,879,974 - 51,883,092 (-)NCBICelera
Cytogenetic Map17CNCBI
Tspo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2912,544,615 - 12,548,563 (+)NCBI
Rnor_6.0 Ensembl914,513,037 - 14,514,416 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0914,510,378 - 14,514,609 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0913,431,506 - 13,434,734 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera910,319,279 - 10,323,162 (+)NCBICelera
Cytogenetic Map9q12NCBI
Tspo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554377,714,107 - 7,715,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554377,714,107 - 7,715,796 (+)NCBIChiLan1.0ChiLan1.0
TSPO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1641,939,481 - 41,941,328 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl641,939,481 - 41,941,328 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0640,630,564 - 40,633,028 (+)NCBIMhudiblu_PPA_v0panPan3
TSPO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl129,795,739 - 9,799,178 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1129,796,421 - 9,799,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
TSPO2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11731,112,877 - 31,116,214 (-)NCBI
ChlSab1.1 Ensembl1731,113,081 - 31,114,219 (-)Ensembl
Tspo2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475417,708,347 - 17,710,034 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 1 1 11 1 1
Low 6 4 2 4 2 12 2 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000045945   ⟹   ENSSSCP00000046818
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl736,347,060 - 36,352,495 (+)Ensembl
RefSeq Acc Id: XM_021098666   ⟹   XP_020954325
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1736,347,259 - 36,352,497 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021098667   ⟹   XP_020954326
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1736,347,027 - 36,352,497 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020954325 (Get FASTA)   NCBI Sequence Viewer  
  XP_020954326 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020954326   ⟸   XM_021098667
- Sequence:
RefSeq Acc Id: XP_020954325   ⟸   XM_021098666
- Sequence:
RefSeq Acc Id: ENSSSCP00000046818   ⟸   ENSSSCT00000045945


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000038553 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070002332 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000046818 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070003570 UniProtKB/TrEMBL
  ENSSSCP00070003647 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045945 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070004334 UniProtKB/TrEMBL
  ENSSSCT00070004428 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1260.100 UniProtKB/TrEMBL
InterPro TspO/MBR-related_sf UniProtKB/TrEMBL
  TspO_MBR UniProtKB/TrEMBL
NCBI Gene TSPO2 ENTREZGENE
PANTHER PTHR10057 UniProtKB/TrEMBL
Pfam TspO_MBR UniProtKB/TrEMBL
PIRSF PBR UniProtKB/TrEMBL
UniProt A0A287ARV6_PIG UniProtKB/TrEMBL
  A0A4X1SM57_PIG UniProtKB/TrEMBL
  A0A4X1SNL0_PIG UniProtKB/TrEMBL