WNT8A (Wnt family member 8A) - Rat Genome Database

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Gene: WNT8A (Wnt family member 8A) Sus scrofa
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Symbol: WNT8A
Name: Wnt family member 8A
RGD ID: 14284017
Description: ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN cell morphogenesis (ortholog); endoderm development (ortholog); establishment of animal organ orientation (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein Wnt-8a
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,103,830 - 140,109,862 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,103,322 - 140,113,682 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,777,794 - 145,784,671 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WNT8A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,103,830 - 140,109,862 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12140,103,322 - 140,113,682 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,777,794 - 145,784,671 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WNT8A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,077,367 - 138,092,365 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,083,990 - 138,092,365 (+)EnsemblGRCh38hg38GRCh38
GRCh375137,419,722 - 137,428,054 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,447,673 - 137,455,098 (+)NCBINCBI36Build 36hg18NCBI36
Build 345137,447,577 - 137,455,953NCBI
Celera5133,541,722 - 133,549,145 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,610,733 - 132,618,179 (+)NCBIHuRef
CHM1_15136,852,364 - 136,859,793 (+)NCBICHM1_1
T2T-CHM13v2.05138,603,716 - 138,618,708 (+)NCBIT2T-CHM13v2.0
Wnt8a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391834,675,380 - 34,681,114 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1834,675,366 - 34,681,326 (+)EnsemblGRCm39 Ensembl
GRCm381834,542,327 - 34,548,061 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1834,542,313 - 34,548,273 (+)EnsemblGRCm38mm10GRCm38
MGSCv371834,701,982 - 34,707,715 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361834,667,114 - 34,673,074 (+)NCBIMGSCv36mm8
Celera1834,995,948 - 35,001,675 (+)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.69NCBI
Wnt8a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81826,411,833 - 26,417,426 (+)NCBIGRCr8
mRatBN7.21826,137,690 - 26,143,283 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,137,690 - 26,143,283 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1826,265,080 - 26,270,673 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,028,812 - 27,034,426 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01826,363,713 - 26,369,327 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01827,331,236 - 27,336,829 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1827,331,236 - 27,336,829 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01827,044,608 - 27,050,201 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41827,007,156 - 27,012,749 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11827,029,469 - 27,038,824 (+)NCBI
Celera1825,876,225 - 25,881,818 (+)NCBICelera
Cytogenetic Map18p12NCBI
Wnt8a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554182,332,636 - 2,338,085 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554182,332,636 - 2,338,099 (-)NCBIChiLan1.0ChiLan1.0
WNT8A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24133,354,550 - 133,367,296 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15131,494,107 - 131,506,856 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05133,419,324 - 133,471,094 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15139,598,229 - 139,605,926 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5139,598,229 - 139,605,926 (+)Ensemblpanpan1.1panPan2
WNT8A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11125,707,058 - 25,752,724 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1125,744,780 - 25,749,748 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1124,470,773 - 24,519,397 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01126,556,926 - 26,605,507 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1126,558,406 - 26,603,592 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,264,436 - 25,313,063 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,088,231 - 25,136,559 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01125,751,347 - 25,800,034 (+)NCBIUU_Cfam_GSD_1.0
Wnt8a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213154,332,315 - 154,337,724 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,273,882 - 7,278,959 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,273,681 - 7,279,394 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT8A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12340,750,907 - 40,759,421 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2340,751,780 - 40,758,790 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603437,130,575 - 37,139,750 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt8a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474330,890,359 - 30,895,682 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474330,852,463 - 30,896,443 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in WNT8A
320 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
1 1 15 3 1 2 2 15 1 5

Sequence


Ensembl Acc Id: ENSSSCT00000023052   ⟹   ENSSSCP00000021498
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2140,103,830 - 140,109,862 (+)Ensembl
RefSeq Acc Id: XM_003480918   ⟹   XP_003480966
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12140,103,322 - 140,113,682 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003480966   ⟸   XM_003480918
- UniProtKB: I3LBS7 (UniProtKB/TrEMBL),   A0A4X1V6F3 (UniProtKB/TrEMBL),   A0A8D1S706 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000021498   ⟸   ENSSSCT00000023052


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000023647 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015031989 UniProtKB/TrEMBL
  ENSSSCG00025049439 UniProtKB/TrEMBL
  ENSSSCG00035039831 UniProtKB/TrEMBL
  ENSSSCG00045029111 UniProtKB/TrEMBL
  ENSSSCG00055029696 UniProtKB/TrEMBL
  ENSSSCG00065066420 UniProtKB/TrEMBL
  ENSSSCG00070021953 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023052 ENTREZGENE
  ENSSSCT00000023052.4 UniProtKB/TrEMBL
  ENSSSCT00015042567.1 UniProtKB/TrEMBL
  ENSSSCT00025067350.1 UniProtKB/TrEMBL
  ENSSSCT00035052913.1 UniProtKB/TrEMBL
  ENSSSCT00045049805.1 UniProtKB/TrEMBL
  ENSSSCT00055059058.1 UniProtKB/TrEMBL
  ENSSSCT00065091188.1 UniProtKB/TrEMBL
  ENSSSCT00070043652.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
InterPro Protein_Wnt-8A/8C UniProtKB/TrEMBL
  Wnt UniProtKB/TrEMBL
  Wnt8 UniProtKB/TrEMBL
  Wnt_C UniProtKB/TrEMBL
  Wnt_CS UniProtKB/TrEMBL
NCBI Gene WNT8A ENTREZGENE
PANTHER PTHR12027 UniProtKB/TrEMBL
  PTHR12027:SF92 UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PRINTS WNT8PROTEIN UniProtKB/TrEMBL
  WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
SMART WNT1 UniProtKB/TrEMBL
UniProt A0A4X1V6F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1S706 ENTREZGENE, UniProtKB/TrEMBL
  I3LBS7 ENTREZGENE
UniProt Secondary I3LBS7 UniProtKB/TrEMBL
VGNC ID VGNC:94976 ENTREZGENE