NEK9 (NIMA related kinase 9) - Rat Genome Database

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Gene: NEK9 (NIMA related kinase 9) Sus scrofa
Analyze
Symbol: NEK9
Name: NIMA related kinase 9
RGD ID: 14282777
Description: ENCODES a protein that exhibits ATP binding (inferred); protein kinase activity (inferred); protein kinase binding (inferred); INVOLVED IN protein phosphorylation (inferred); ASSOCIATED WITH ARTHROGRYPOSIS, PERTHES DISEASE, AND UPWARD GAZE PALSY (ortholog); cleft palate (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: NIMA (never in mitosis gene a)- related kinase 9; serine/threonine-protein kinase Nek9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl798,275,976 - 98,322,469 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1798,275,973 - 98,322,072 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27104,120,094 - 104,166,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IEA,ISO)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
NEK9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl798,275,976 - 98,322,469 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1798,275,973 - 98,322,072 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27104,120,094 - 104,166,188 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NEK9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1475,079,353 - 75,127,344 (-)EnsemblGRCh38hg38GRCh38
GRCh381475,079,353 - 75,127,637 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371475,546,056 - 75,593,751 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361474,620,728 - 74,663,389 (-)NCBINCBI36hg18NCBI36
Build 341474,620,727 - 74,663,389NCBI
Celera1455,586,461 - 55,631,402 (-)NCBI
Cytogenetic Map14q24.3NCBI
HuRef1455,716,982 - 55,761,929 (-)NCBIHuRef
CHM1_11475,486,591 - 75,531,543 (-)NCBICHM1_1
Nek9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391285,346,288 - 85,386,136 (-)NCBIGRCm39mm39
GRCm39 Ensembl1285,346,288 - 85,386,136 (-)Ensembl
GRCm381285,299,514 - 85,339,362 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1285,299,514 - 85,339,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv371286,640,464 - 86,680,312 (-)NCBIGRCm37mm9NCBIm37
MGSCv361286,188,616 - 86,228,440 (-)NCBImm8
Celera1286,757,015 - 86,796,871 (-)NCBICelera
Cytogenetic Map12D2NCBI
Nek9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26104,944,056 - 104,984,538 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl6109,124,330 - 109,162,267 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06109,121,524 - 109,162,433 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06116,390,523 - 116,435,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46109,345,437 - 109,389,174 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16109,351,642 - 109,394,468 (-)NCBI
Celera6102,766,488 - 102,807,366 (-)NCBICelera
Cytogenetic Map6q31NCBI
Nek9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955523446,748 - 482,246 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955523443,832 - 483,397 (+)NCBIChiLan1.0ChiLan1.0
NEK9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11474,478,387 - 74,522,320 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1474,478,387 - 74,522,320 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01455,633,667 - 55,678,670 (-)NCBIMhudiblu_PPA_v0panPan3
NEK9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1848,180,203 - 48,218,430 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl848,183,071 - 48,257,646 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha847,864,320 - 47,902,676 (-)NCBI
ROS_Cfam_1.0848,407,827 - 48,446,234 (-)NCBI
UMICH_Zoey_3.1848,078,603 - 48,116,941 (-)NCBI
UNSW_CanFamBas_1.0848,099,872 - 48,138,217 (-)NCBI
UU_Cfam_GSD_1.0848,498,571 - 48,536,910 (-)NCBI
Nek9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864027,807,701 - 27,847,583 (+)NCBI
SpeTri2.0NW_0049364884,221,099 - 4,261,401 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEK9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12452,297,211 - 52,342,359 (-)NCBI
ChlSab1.1 Ensembl2452,296,261 - 52,342,724 (-)Ensembl
Vero_WHO_p1.0NW_02366605340,527,142 - 40,572,456 (-)NCBI
Nek9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473426,557,208 - 26,600,777 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 4 3 5 2 11 2 3 3
Low 1 12
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002648   ⟹   ENSSSCP00000002581
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl798,275,976 - 98,322,059 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000072440   ⟹   ENSSSCP00000068861
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl798,279,074 - 98,322,469 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076876   ⟹   ENSSSCP00000071355
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl798,276,115 - 98,322,469 (-)Ensembl
RefSeq Acc Id: XM_003356752   ⟹   XP_003356800
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1798,275,973 - 98,322,072 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003356800 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003356800   ⟸   XM_003356752
- Sequence:
RefSeq Acc Id: ENSSSCP00000002581   ⟸   ENSSSCT00000002648
RefSeq Acc Id: ENSSSCP00000071355   ⟸   ENSSSCT00000076876
RefSeq Acc Id: ENSSSCP00000068861   ⟸   ENSSSCT00000072440
Protein Domains
Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002381 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070007819 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000002581 UniProtKB/TrEMBL
  ENSSSCP00000068861 UniProtKB/TrEMBL
  ENSSSCP00000071355 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070012506 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002648 UniProtKB/TrEMBL
  ENSSSCT00000072440 UniProtKB/TrEMBL
  ENSSSCT00000076876 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070015122 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.30 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Nek9_STKc UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  RCC1/BLIP-II UniProtKB/TrEMBL
  Reg_chr_condens UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report ssc:100152772 UniProtKB/TrEMBL
NCBI Gene NEK9 ENTREZGENE
Pfam Pkinase UniProtKB/TrEMBL
  RCC1 UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
  RCC1_3 UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF50985 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A480LA11_PIG UniProtKB/TrEMBL
  A0A4X1TBE5_PIG UniProtKB/TrEMBL
  A0A5G2QV66_PIG UniProtKB/TrEMBL
  A0A5G2RB30_PIG UniProtKB/TrEMBL
  F1S2Q4_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90679 ENTREZGENE