RAB13 (RAB13, member RAS oncogene family) - Rat Genome Database

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Gene: RAB13 (RAB13, member RAS oncogene family) Sus scrofa
Analyze
Symbol: RAB13
Name: RAB13, member RAS oncogene family (Ensembl:RAB13, member RAS onco family)
RGD ID: 14281088
Description: ENCODES a protein that exhibits protein kinase A catalytic subunit binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cortical actin cytoskeleton organization (ortholog); establishment of Sertoli cell barrier (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); GAND syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN Golgi apparatus (ortholog); insulin-responsive compartment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-13
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,705,220 - 95,711,729 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,705,093 - 95,709,942 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,606,045 - 104,611,247 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RAB13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,705,220 - 95,711,729 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,705,093 - 95,709,942 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,606,045 - 104,611,247 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAB13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,981,650 - 153,990,708 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,981,617 - 153,986,358 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,954,126 - 153,958,815 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,220,751 - 152,225,430 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,767,202 - 150,771,879NCBI
Celera1127,025,879 - 127,030,558 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,316,456 - 125,321,216 (-)NCBIHuRef
CHM1_11155,350,407 - 155,355,167 (-)NCBICHM1_1
T2T-CHM13v2.01153,118,913 - 153,127,907 (-)NCBIT2T-CHM13v2.0
Rab13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,121,022 - 90,133,694 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,121,002 - 90,133,692 (+)EnsemblGRCm39 Ensembl
GRCm38390,213,715 - 90,226,387 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,213,695 - 90,226,385 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,024,739 - 90,029,885 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,306,744 - 90,311,890 (+)NCBIMGSCv36mm8
Celera390,257,755 - 90,263,055 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.21NCBI
Rab13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,972,535 - 177,977,679 (+)NCBIGRCr8
mRatBN7.22175,674,894 - 175,680,043 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,675,005 - 175,680,036 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2182,815,256 - 182,819,665 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02180,837,642 - 180,842,053 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,437,832 - 175,442,251 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,581,209 - 189,586,358 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,581,644 - 189,586,338 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,014,390 - 209,019,155 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,460,998 - 182,465,393 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,411,103 - 182,415,499 (+)NCBI
Celera2169,611,392 - 169,615,789 (+)NCBICelera
Cytogenetic Map2q34NCBI
Rab13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545589,239 - 594,835 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545590,021 - 594,191 (-)NCBIChiLan1.0ChiLan1.0
RAB13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,845,326 - 95,850,564 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,580,569 - 95,586,296 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,338,524 - 129,343,234 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,967,363 - 132,972,068 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,967,363 - 132,972,067 (-)Ensemblpanpan1.1panPan2
RAB13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,152,903 - 43,156,720 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,153,002 - 43,156,720 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,643,351 - 42,647,069 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,023,274 - 43,027,095 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,023,377 - 43,027,095 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,802,039 - 42,805,757 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,855,205 - 42,858,928 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,139,557 - 43,143,275 (+)NCBIUU_Cfam_GSD_1.0
Rab13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,698,570 - 24,702,753 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,728,892 - 3,733,167 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,728,952 - 3,733,126 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,832,220 - 9,836,890 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660389,195,727 - 9,200,396 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,239,595 - 3,243,539 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,239,581 - 3,243,539 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB13
80 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 1 3 2 4 2 3
Low 3 3 2 19 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000007191   ⟹   ENSSSCP00000006998
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl495,705,220 - 95,711,729 (+)Ensembl
RefSeq Acc Id: XM_013997080   ⟹   XP_013852534
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1495,705,093 - 95,709,942 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013852534   ⟸   XM_013997080
- UniProtKB: F1RFW5 (UniProtKB/TrEMBL),   A0A4X1VZW5 (UniProtKB/TrEMBL),   A0A8D0IM75 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000006998   ⟸   ENSSSCT00000007191


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006564 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005012957 UniProtKB/TrEMBL
  ENSSSCG00015027946 UniProtKB/TrEMBL
  ENSSSCG00025022171 UniProtKB/TrEMBL
  ENSSSCG00030060185 UniProtKB/TrEMBL
  ENSSSCG00035059009 UniProtKB/TrEMBL
  ENSSSCG00040035767 UniProtKB/TrEMBL
  ENSSSCG00045036349 UniProtKB/TrEMBL
  ENSSSCG00050014727 UniProtKB/TrEMBL
  ENSSSCG00055008135 UniProtKB/TrEMBL
  ENSSSCG00060063144 UniProtKB/TrEMBL
  ENSSSCG00065073439 UniProtKB/TrEMBL
  ENSSSCG00070027954 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007191 ENTREZGENE
  ENSSSCT00000007191.5 UniProtKB/TrEMBL
  ENSSSCT00005020236.1 UniProtKB/TrEMBL
  ENSSSCT00015037075.1 UniProtKB/TrEMBL
  ENSSSCT00025030166.1 UniProtKB/TrEMBL
  ENSSSCT00030084072.1 UniProtKB/TrEMBL
  ENSSSCT00035079027.1 UniProtKB/TrEMBL
  ENSSSCT00040048129.1 UniProtKB/TrEMBL
  ENSSSCT00045062560.1 UniProtKB/TrEMBL
  ENSSSCT00050019913.1 UniProtKB/TrEMBL
  ENSSSCT00055015908.1 UniProtKB/TrEMBL
  ENSSSCT00060086143.1 UniProtKB/TrEMBL
  ENSSSCT00065101087.1 UniProtKB/TrEMBL
  ENSSSCT00070056102.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
KEGG Report ssc:100154707 UniProtKB/TrEMBL
NCBI Gene RAB13 ENTREZGENE
PANTHER LD44762P UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-13 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART ARF UniProtKB/TrEMBL
  RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A4X1VZW5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IM75 ENTREZGENE, UniProtKB/TrEMBL
  F1RFW5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98842 ENTREZGENE