LOC110258605 (olfactory receptor 6B1) - Rat Genome Database

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Gene: LOC110258605 (olfactory receptor 6B1) Sus scrofa
Analyze
Symbol: LOC110258605
Name: olfactory receptor 6B1
RGD ID: 14280876
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); olfactory receptor activity (inferred); INVOLVED IN detection of chemical stimulus involved in sensory perception of smell (inferred); G protein-coupled receptor signaling pathway (inferred); sensory perception of smell (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position: No map positions available.


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC110258605
(Sus scrofa - pig)		 No map positions available.
OR6B1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387144,000,320 - 144,008,793 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7144,000,320 - 144,008,793 (+)EnsemblGRCh38hg38GRCh38
GRCh377143,697,413 - 143,705,886 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367143,332,023 - 143,332,958 (+)NCBINCBI36Build 36hg18NCBI36
Build 347143,138,737 - 143,139,673NCBI
Celera7138,334,371 - 138,335,306 (+)NCBICelera
Cytogenetic Map7q35NCBI
HuRef7137,900,558 - 137,901,493 (+)NCBIHuRef
CHM1_17143,638,436 - 143,639,371 (+)NCBICHM1_1
T2T-CHM13v2.07145,280,679 - 145,289,168 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27143,039,260 - 143,040,195 (+)NCBI
Or6b1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39642,811,350 - 42,815,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl642,811,318 - 42,816,450 (+)EnsemblGRCm39 Ensembl
GRCm38642,834,416 - 42,838,882 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl642,834,384 - 42,839,516 (+)EnsemblGRCm38mm10GRCm38
MGSCv37642,787,882 - 42,788,817 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36642,767,490 - 42,768,425 (+)NCBIMGSCv36mm8
Celera642,783,845 - 42,784,780 (+)NCBICelera
Cytogenetic Map6B2.1NCBI
cM Map620.93NCBI
Or6b1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8472,800,004 - 72,800,939 (+)NCBIGRCr8
mRatBN7.2471,799,982 - 71,800,917 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl471,796,561 - 71,802,656 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx476,787,023 - 76,787,958 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0472,700,246 - 72,701,181 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0471,092,690 - 71,093,625 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0472,428,128 - 72,429,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl472,428,128 - 72,429,063 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl472,332,490 - 72,333,425 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04137,124,552 - 137,125,487 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4470,735,503 - 70,736,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1471,011,632 - 71,012,568 (+)NCBI
Celera466,749,969 - 66,750,904 (+)NCBICelera
Cytogenetic Map4q24NCBI
LOC102004170
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955491349,421 - 350,356 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955491349,180 - 350,455 (+)NCBIChiLan1.0ChiLan1.0
LOC100978153
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26180,715,742 - 180,724,213 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1732,725,999 - 32,734,470 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07135,860,879 - 135,861,913 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17148,350,201 - 148,351,235 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7148,350,263 - 148,351,216 (+)Ensemblpanpan1.1panPan2
OR6B1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1165,884,765 - 5,885,780 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl165,884,854 - 5,885,780 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha166,931,577 - 6,932,503 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0165,737,935 - 5,738,861 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl165,737,935 - 5,738,861 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1165,679,240 - 5,680,166 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0165,536,052 - 5,536,978 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0165,605,251 - 5,606,177 (-)NCBIUU_Cfam_GSD_1.0
LOC101966817
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511811,678,661 - 11,695,658 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365271,212,800 - 1,213,735 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365271,212,739 - 1,213,771 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103227150
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121112,750,372 - 112,751,887 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21112,750,546 - 112,751,481 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660729,519,305 - 9,520,346 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101701679
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480010,985,545 - 10,986,480 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480010,985,545 - 10,986,480 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021081896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031178 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005022277 UniProtKB/TrEMBL
  ENSSSCG00015002899 UniProtKB/TrEMBL
  ENSSSCG00025000415 UniProtKB/TrEMBL
  ENSSSCG00030013067 UniProtKB/TrEMBL
  ENSSSCG00035070531 UniProtKB/TrEMBL
  ENSSSCG00040058899 UniProtKB/TrEMBL
  ENSSSCG00045039211 UniProtKB/TrEMBL
  ENSSSCG00050023558 UniProtKB/TrEMBL
  ENSSSCG00055011536 UniProtKB/TrEMBL
  ENSSSCG00060055632 UniProtKB/TrEMBL
  ENSSSCG00065016923 UniProtKB/TrEMBL
  ENSSSCG00070007199 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000044414 ENTREZGENE
  ENSSSCT00000044414.2 UniProtKB/TrEMBL
  ENSSSCT00005035161.1 UniProtKB/TrEMBL
  ENSSSCT00015003620.1 UniProtKB/TrEMBL
  ENSSSCT00025000486.1 UniProtKB/TrEMBL
  ENSSSCT00030017917.1 UniProtKB/TrEMBL
  ENSSSCT00035095298.1 UniProtKB/TrEMBL
  ENSSSCT00040079977.1 UniProtKB/TrEMBL
  ENSSSCT00045068229.1 UniProtKB/TrEMBL
  ENSSSCT00050031789.1 UniProtKB/TrEMBL
  ENSSSCT00055022568.1 UniProtKB/TrEMBL
  ENSSSCT00060075799.1 UniProtKB/TrEMBL
  ENSSSCT00065022459.1 UniProtKB/TrEMBL
  ENSSSCT00070013846.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC110258605 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A287BNP4 ENTREZGENE
  A0A4X1T9C9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W2K7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BNP4 UniProtKB/TrEMBL