TMEM9B (TMEM9 domain family member B) - Rat Genome Database

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Gene: TMEM9B (TMEM9 domain family member B) Sus scrofa
Analyze
Symbol: TMEM9B
Name: TMEM9 domain family member B
RGD ID: 14276281
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN epithelium development (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: achaete-scute complex homolog 3; achaete-scute family bHLH transcription factor 3; achaete-scute homolog 3; ASCL3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9462,643 - 521,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19518,449 - 519,710 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29585,232 - 588,005 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TMEM9B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9462,643 - 521,013 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19518,449 - 519,710 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29585,232 - 588,005 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASCL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38118,937,578 - 8,943,016 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl118,937,578 - 8,943,016 (-)EnsemblGRCh38hg38GRCh38
GRCh37118,959,125 - 8,964,563 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36118,915,695 - 8,921,156 (-)NCBINCBI36Build 36hg18NCBI36
Build 34118,915,694 - 8,921,156NCBI
Celera119,078,881 - 9,084,342 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef118,629,425 - 8,634,887 (-)NCBIHuRef
CHM1_1118,958,058 - 8,963,517 (-)NCBICHM1_1
T2T-CHM13v2.0119,021,751 - 9,027,203 (-)NCBIT2T-CHM13v2.0
Ascl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,326,672 - 109,330,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,326,672 - 109,330,933 (-)EnsemblGRCm39 Ensembl
GRCm387109,727,465 - 109,731,732 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7109,727,465 - 109,731,726 (-)EnsemblGRCm38mm10GRCm38
MGSCv377116,870,979 - 116,875,246 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,518,642 - 109,522,909 (-)NCBIMGSCv36mm8
Celera7109,701,621 - 109,705,880 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.46NCBI
Ascl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81173,190,061 - 173,194,302 (-)NCBIGRCr8
mRatBN7.21163,755,306 - 163,755,951 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1163,754,956 - 163,759,682 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1172,091,948 - 172,092,593 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01179,277,994 - 179,278,639 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,960,108 - 171,960,753 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,351,413 - 174,355,590 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01181,336,764 - 181,337,409 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,345,397 - 167,349,614 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11167,456,059 - 167,456,648 (-)NCBI
Cytogenetic Map1q33NCBI
Ascl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541424,688,233 - 24,691,361 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541424,688,233 - 24,691,361 (-)NCBIChiLan1.0ChiLan1.0
ASCL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,372,606 - 11,376,393 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11111,330,976 - 11,334,741 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,066,304 - 9,067,511 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1118,807,814 - 8,813,289 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl118,807,858 - 8,808,403 (-)Ensemblpanpan1.1panPan2
ASCL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,295,736 - 32,303,349 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,297,197 - 32,297,742 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,865,151 - 31,870,054 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02133,170,543 - 33,175,448 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12132,440,212 - 32,444,712 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02132,605,938 - 32,610,840 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,899,811 - 32,904,714 (-)NCBIUU_Cfam_GSD_1.0
Ascl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,095,137 - 53,097,617 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365289,129,722 - 9,130,521 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASCL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,868,503 - 55,869,744 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,868,641 - 55,869,183 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038153,556,537 - 153,557,178 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ascl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247661,081,694 - 1,082,236 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247661,080,948 - 1,082,372 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM9B
33 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000015922   ⟹   ENSSSCP00000015502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9495,697 - 521,013 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000015927   ⟹   ENSSSCP00000015507
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9495,511 - 510,267 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000071642   ⟹   ENSSSCP00000074500
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9462,643 - 510,261 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000073103   ⟹   ENSSSCP00000073872
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9496,508 - 510,262 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000075150   ⟹   ENSSSCP00000072850
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9462,643 - 504,247 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000083267   ⟹   ENSSSCP00000072894
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl9495,693 - 505,310 (+)Ensembl
RefSeq Acc Id: XM_003129388   ⟹   XP_003129436
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.19518,449 - 519,710 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003129436   ⟸   XM_003129388
- UniProtKB: A0A4X1SP03 (UniProtKB/TrEMBL),   A0A8D0IW86 (UniProtKB/TrEMBL),   A0A8D1Z289 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000015502   ⟸   ENSSSCT00000015922
RefSeq Acc Id: ENSSSCP00000015507   ⟸   ENSSSCT00000015927
RefSeq Acc Id: ENSSSCP00000072894   ⟸   ENSSSCT00000083267
RefSeq Acc Id: ENSSSCP00000072850   ⟸   ENSSSCT00000075150
RefSeq Acc Id: ENSSSCP00000074500   ⟸   ENSSSCT00000071642
RefSeq Acc Id: ENSSSCP00000073872   ⟸   ENSSSCT00000073103
Protein Domains
Aspartic peptidase DDI1-type   bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014577 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005016756 UniProtKB/TrEMBL
  ENSSSCG00015026683 UniProtKB/TrEMBL
  ENSSSCG00025026357 UniProtKB/TrEMBL
  ENSSSCG00030007483 UniProtKB/TrEMBL
  ENSSSCG00035077089 UniProtKB/TrEMBL
  ENSSSCG00040025865 UniProtKB/TrEMBL
  ENSSSCG00045008101 UniProtKB/TrEMBL
  ENSSSCG00050043204 UniProtKB/TrEMBL
  ENSSSCG00055007994 UniProtKB/TrEMBL
  ENSSSCG00055008102 UniProtKB/TrEMBL
  ENSSSCG00060078120 UniProtKB/TrEMBL
  ENSSSCG00060078138 UniProtKB/TrEMBL
  ENSSSCG00065050577 UniProtKB/TrEMBL
  ENSSSCG00065050761 UniProtKB/TrEMBL
  ENSSSCG00065051204 UniProtKB/TrEMBL
  ENSSSCG00070002881 UniProtKB/TrEMBL
  ENSSSCG00070002892 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015922.4 UniProtKB/TrEMBL
  ENSSSCT00000083267.2 UniProtKB/TrEMBL
  ENSSSCT00005026409.1 UniProtKB/TrEMBL
  ENSSSCT00015035800.1 UniProtKB/TrEMBL
  ENSSSCT00015035908.1 UniProtKB/TrEMBL
  ENSSSCT00025035625.1 UniProtKB/TrEMBL
  ENSSSCT00025036116.1 UniProtKB/TrEMBL
  ENSSSCT00025036240.1 UniProtKB/TrEMBL
  ENSSSCT00025036345.1 UniProtKB/TrEMBL
  ENSSSCT00030010033.1 UniProtKB/TrEMBL
  ENSSSCT00030010111.1 UniProtKB/TrEMBL
  ENSSSCT00030010121.1 UniProtKB/TrEMBL
  ENSSSCT00030010133.1 UniProtKB/TrEMBL
  ENSSSCT00035104963.1 UniProtKB/TrEMBL
  ENSSSCT00035105005.1 UniProtKB/TrEMBL
  ENSSSCT00035105074.1 UniProtKB/TrEMBL
  ENSSSCT00035105269.1 UniProtKB/TrEMBL
  ENSSSCT00035105318.1 UniProtKB/TrEMBL
  ENSSSCT00035105365.1 UniProtKB/TrEMBL
  ENSSSCT00040034750.1 UniProtKB/TrEMBL
  ENSSSCT00040034889.1 UniProtKB/TrEMBL
  ENSSSCT00045013616.1 UniProtKB/TrEMBL
  ENSSSCT00045013645.1 UniProtKB/TrEMBL
  ENSSSCT00045013749.1 UniProtKB/TrEMBL
  ENSSSCT00045013799.1 UniProtKB/TrEMBL
  ENSSSCT00045013839.1 UniProtKB/TrEMBL
  ENSSSCT00045013888.1 UniProtKB/TrEMBL
  ENSSSCT00045013943.1 UniProtKB/TrEMBL
  ENSSSCT00050058772.1 UniProtKB/TrEMBL
  ENSSSCT00050058779.1 UniProtKB/TrEMBL
  ENSSSCT00050058810.1 UniProtKB/TrEMBL
  ENSSSCT00050058824.1 UniProtKB/TrEMBL
  ENSSSCT00050058834.1 UniProtKB/TrEMBL
  ENSSSCT00055015629.1 UniProtKB/TrEMBL
  ENSSSCT00055015716.1 UniProtKB/TrEMBL
  ENSSSCT00055015745.1 UniProtKB/TrEMBL
  ENSSSCT00055015844.1 UniProtKB/TrEMBL
  ENSSSCT00060107743.1 UniProtKB/TrEMBL
  ENSSSCT00060107758.1 UniProtKB/TrEMBL
  ENSSSCT00060107770.1 UniProtKB/TrEMBL
  ENSSSCT00065069284.1 UniProtKB/TrEMBL
  ENSSSCT00065069521.1 UniProtKB/TrEMBL
  ENSSSCT00065070157.1 UniProtKB/TrEMBL
  ENSSSCT00070005384.1 UniProtKB/TrEMBL
  ENSSSCT00070005418.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.70.10 UniProtKB/TrEMBL
  4.10.280.10 UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
  NRIP_C UniProtKB/TrEMBL
  Peptidase_aspartic_DDI1-type UniProtKB/TrEMBL
  Peptidase_aspartic_dom_sf UniProtKB/TrEMBL
  TMEM9 UniProtKB/TrEMBL
KEGG Report ssc:100518920 UniProtKB/TrEMBL
NCBI Gene ASCL3 ENTREZGENE
PANTHER ASPARTYL PROTEASE DDI-RELATED UniProtKB/TrEMBL
  BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST UniProtKB/TrEMBL
  FACTOR IN THE GERMLINE ALPHA UniProtKB/TrEMBL
  NUCLEAR RECEPTOR-INTERACTING PROTEIN 3 UniProtKB/TrEMBL
  PTHR13064 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 9B UniProtKB/TrEMBL
Pfam Asp_protease UniProtKB/TrEMBL
  HLH UniProtKB/TrEMBL
  Tmemb_9 UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
  SSF50630 UniProtKB/TrEMBL
UniProt A0A4X1SP03 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SPV5_PIG UniProtKB/TrEMBL
  A0A5G2R993_PIG UniProtKB/TrEMBL
  A0A8D0IW86 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0VD58_PIG UniProtKB/TrEMBL
  A0A8D0VE39_PIG UniProtKB/TrEMBL
  A0A8D1B808_PIG UniProtKB/TrEMBL
  A0A8D1BBK6_PIG UniProtKB/TrEMBL
  A0A8D1D599_PIG UniProtKB/TrEMBL
  A0A8D1D5P7_PIG UniProtKB/TrEMBL
  A0A8D1GVP5_PIG UniProtKB/TrEMBL
  A0A8D1GZF0_PIG UniProtKB/TrEMBL
  A0A8D1KSD7_PIG UniProtKB/TrEMBL
  A0A8D1MM09_PIG UniProtKB/TrEMBL
  A0A8D1X0S7_PIG UniProtKB/TrEMBL
  A0A8D1Z289 ENTREZGENE, UniProtKB/TrEMBL
  F1RNK0_PIG UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-07-26 TMEM9B  TMEM9 domain family member B  ASCL3  achaete-scute family bHLH transcription factor 3  Symbol and/or name change 19259463 PROVISIONAL