VAPA (VAMP associated protein A) - Rat Genome Database

Name: VAPA
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: VAPA (VAMP associated protein A) Sus scrofa

Analyze

Symbol:

VAPA

Name:

VAMP associated protein A

RGD ID:

14275208

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN endoplasmic reticulum organization (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); protein folding in endoplasmic reticulum (ortholog); ASSOCIATED WITH chromosome 18p deletion syndrome (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum exit site (ortholog); membrane (ortholog); microtubule cytoskeleton (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

vesicle-associated membrane protein-associated protein A

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	98,210,053 - 98,254,226 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	98,212,335 - 98,254,272 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

chromosome 18p deletion syndrome (ISO)

dystonia (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ceramide transport (IEA)

cholesterol transport (IEA)

COPII-coated vesicle budding (IEA)

endoplasmic reticulum organization (ISO)

endoplasmic reticulum to Golgi vesicle-mediated transport (IEA)

endoplasmic reticulum-plasma membrane tethering (IEA)

negative regulation by host of viral genome replication (IEA)

neuron projection development (IBA,IEA)

phospholipid transport (IEA)

positive regulation by host of viral genome replication (IEA)

positive regulation of canonical NF-kappaB signal transduction (ISO)

protein folding in endoplasmic reticulum (ISO)

protein localization to endoplasmic reticulum (IEA)

sphingomyelin biosynthetic process (IEA)

sterol transport (IEA)

viral release from host cell (IEA)

Cellular Component

bicellular tight junction (IEA)

endoplasmic reticulum (IEA)

endoplasmic reticulum exit site (ISO)

endoplasmic reticulum membrane (IBA,IEA)

Golgi membrane (IEA)

membrane (ISO)

microtubule cytoskeleton (ISO)

nuclear membrane (ISO)

perinuclear region of cytoplasm (IEA)

plasma membrane (IBA,IEA)

vesicle (IEA)

Molecular Function

FFAT motif binding (IBA,IEA)

identical protein binding (ISO)

microtubule binding (IEA)

protein binding (ISO)

protein domain specific binding (IEA)

protein heterodimerization activity (IEA)

protein homodimerization activity (IEA)

protein-containing complex binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:15679890	PMID:17145712	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

VAPA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	98,210,053 - 98,254,226 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	98,212,335 - 98,254,272 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

VAPA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	18	9,914,016 - 9,960,021 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	18	9,914,016 - 9,960,021 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	18	9,914,013 - 9,960,018 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	18	9,903,955 - 9,950,018 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	18	9,903,983 - 9,949,571	NCBI
Celera	18	9,797,515 - 9,843,493 (+)	NCBI		Celera
Cytogenetic Map	18	p11.22	NCBI
HuRef	18	9,893,891 - 9,921,843 (+)	NCBI		HuRef
CHM1_1	18	9,913,226 - 9,959,178 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	18	10,077,467 - 10,123,397 (+)	NCBI		T2T-CHM13v2.0

Vapa
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	65,887,048 - 65,925,441 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	65,885,322 - 65,920,550 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	65,580,053 - 65,616,462 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	65,578,327 - 65,613,555 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	65,929,393 - 65,962,895 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	65,479,598 - 65,513,084 (-)	NCBI		MGSCv36	mm8
Celera	17	69,883,322 - 69,916,704 (-)	NCBI		Celera
Cytogenetic Map	17	E1.1	NCBI
cM Map	17	34.9	NCBI

Vapa
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	112,624,791 - 112,654,731 (-)	NCBI		GRCr8
mRatBN7.2	9	105,177,904 - 105,208,400 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	105,177,907 - 105,207,847 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	113,588,500 - 113,618,316 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	118,698,807 - 118,728,640 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	117,054,450 - 117,084,266 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	113,300,831 - 113,331,872 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	113,300,832 - 113,331,319 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	112,833,701 - 112,864,112 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	104,339,039 - 104,368,908 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	104,548,519 - 104,578,388 (-)	NCBI
Celera	9	102,564,697 - 102,594,412 (-)	NCBI		Celera
Cytogenetic Map	9	q37	NCBI

Vapa
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955402	2,270,850 - 2,298,227 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955402	2,274,248 - 2,309,461 (-)	NCBI	ChiLan1.0	ChiLan1.0

VAPA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	17	28,496,390 - 28,537,484 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	18	14,188,987 - 14,230,079 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	18	4,329,479 - 4,373,047 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	18	6,613,042 - 6,642,425 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	18	6,612,105 - 6,637,829 (-)	Ensembl	panpan1.1		panPan2

VAPA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	75,844,927 - 75,891,811 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	75,845,000 - 75,889,076 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	75,242,387 - 75,289,206 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	75,905,356 - 75,948,878 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	75,905,322 - 75,949,488 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	75,603,405 - 75,650,255 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	75,621,438 - 75,668,178 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	75,930,605 - 75,977,554 (+)	NCBI		UU_Cfam_GSD_1.0

Vapa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	2,321,989 - 2,357,518 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936626	1,548,139 - 1,568,656 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936626	1,550,305 - 1,585,783 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VAPA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	18	68,784,786 - 68,825,333 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	18	68,784,799 - 68,827,581 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	43,739,425 - 43,782,261 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vapa
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624770	18,411,789 - 18,447,009 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624770	18,411,921 - 18,447,004 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in VAPA
419 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	9	4	3	5	2	23	2	3	3
Low	1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021096053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021096054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021096055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK240328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK347491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK348730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK398504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK400897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY610097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01112363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000049156 ⟹ ENSSSCP00000053405

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	98,210,053 - 98,254,226 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000061774 ⟹ ENSSSCP00000041371

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	98,210,053 - 98,254,226 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000073065 ⟹ ENSSSCP00000067853

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	6	98,213,073 - 98,254,226 (-)	Ensembl

RefSeq Acc Id:

XM_021096053 ⟹ XP_020951712

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	98,212,335 - 98,254,272 (-)	NCBI

Sequence:

show sequence

TGGGGCGCCGAGGATCGCAGTGCGCGCGGCCGCGGCGGCTGGTGTGGGGTTGAGTCAGTTGTGA
GACCCGGAGCTGCGGACCGGCGGGCGGCCCTCCGAGCCGGCGACACAGCGGTGGGCGTCGGGTT
CGGGAGCCGAGCGCTGGCCCCGCGTCGACCCGGGCCGAGCCGCGCCGCCGCCCCCCGCCCGCAG
CCACCGACCGGCCGCCGCGGGCGCGCCCCCGCTCTCCGCTGTCTCTCCGATGGCGTCCGCCTCC
GGGGCCATGGCGAAGCACGAGCAGATCCTGGTCCTCGACCCGCCCACAGACCTCAAATTCAAAG
GCCCCTTCACAGATGTAGTCACTACAAATCTTAAGTTGCGAAATCCGTCGGATAGAAAAGTATG
TTTCAAAGTGAAGACGACAGCGCCTCGTCGGTACTGTGTGAGGCCCAACAGTGGAATTATTGAC
CCGGGGTTGACTGTGACTGTTTCAGTAATGCTGCAGCCTTTTGACTATGATCCCAACGAAAAGA
GTAAACACAAGTTTATGGTACAGACCATTTTTGCTCCACCAAACATTACAGATATGGAAGCTGT
GTGGAAAGAAGCAAAACCTGATGAATTAATGGATTCTAAATTGAGATGTGTGTTTGAAATGCCC
AATGAAAATGATAAATTGGGTACCGCCCCGCCGGGGACTGCTCTGGCTGCCACTCCACTGAGCA
CCACCACCAGCACAGTCGCAGCACCTGCCAGTTATAGCACGAAGAGTGAGCCCAGGGGACTCAG
TGTGTTCAAACAGGAGAAGCAGAAGAACGACATGGAGCCCAGCAAAGCTGCGCCCCTGAACGCC
GCCAAGCAGGATGGGCCGGTGCCAAAGCCGCACAGTGTTTCCCTCAGCGATGCGGACACCAGGA
AGCTGGTGGAGGAGTGCAAGCGGCTCCAGGGAGAGATGGTGAAGCTGTCGGAGGAGAACCGGCA
CCTGCGGGATGAAGGCTTAAGGCTCAGAAAGGTAGCACATTCGGAAAAACCTGGATCCACCTCA
GCCGCGTCCTTCAGAGATAATGTCACCAGCCCTCTTCCTTCACTCCTTGTTGTAATTGCAGCCA
TTTTCATTGGATTCTTTCTAGGAAAATTCATCTTGTAGAGTGAAGCATGCAGAGTGCTATTTCT
TTTTTTTTCTCCCGACCAGAAAAAGATTTGTTTACCTACCATCTCACTGGTAGTGTGGCCCACG
GTGACCATTCTTTGTGTGTACAGCGTCATGTAGGCCTCGCCTTTAAAGGTCTCACGGTTAGAAA
TCAGTAAGAGCAGAGTGTTCGGCGCCTGGACAGAGTGTACGTGGCCAGACCATCACTAGCAGGT
GTCAGTTGCACATTCAGTCCTTTATGAAATTCATAAATAAAAAATTGTTCTTTCTTTGTGGTTT
TAATAAGAGTTCAAGAATTGTTCAGAGTCTTGTAAATGTTATTTTAATAATCCCTTTAAATTTT
ATCTGTTGCTGTTACCTCTTGAAATATGATTTATTTAGATTGCTAATCCCACTCATTCAGGAAA
TGCCAAGAGGTATTCTGTGGGGAAATGGTGCCTCTTACAGTGTAAATTTTCTCCTTTACCTTTG
CTAATATCATGGCAGAATTTTTCTTATCCCTCGTGAGGCAGTTGTTGACTGAGTTTTTCACCCT
TACAATCCTGTCCCATGGTATTTAACATAAAAATAATAAAACCGTTAACAGATTCTTGCTCGAT
AGCTTGTGTGTGTCTGTCATGTCATTAGATGGGATACCAGGGCGTGCGCTGTGGTGATTTGGGT
TATAAAATGTGTAATTTATCTCACACTGAACCCTTTCATATATTACAGTATTTGCGGGGAAGAG
TCCTCATTGTTTTAAGCAAAGGAATTGATAACATTTCAGGCCGCTTTTGGCATTTTGGAAGATC
AAAATCCATTTGTCTTCGAGATAATATAAAATAAGCAATGAGAATAAAAGTGCTGTGATTTCAG
TCA

hide sequence

RefSeq Acc Id:

XM_021096054 ⟹ XP_020951713

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	98,212,335 - 98,254,266 (-)	NCBI

Sequence:

show sequence

GCCGAGGATCGCAGTGCGCGCGGCCGCGGCGGCTGGTGTGGGGTTGAGTCAGTTGTGAGACCCG
GAGCTGCGGACCGGCGGGCGGCCCTCCGAGCCGGCGACACAGCGGTGGGCGTCGGGTTCGGGAG
CCGAGCGCTGGCCCCGCGTCGACCCGGGCCGAGCCGCGCCGCCGCCCCCCGCCCGCAGCCACCG
ACCGGCCGCCGCGGGCGCGCCCCCGCTCTCCGCTGTCTCTCCGATGGCGTCCGCCTCCGGGGCC
ATGGCGAAGCACGAGCAGATCCTGGTCCTCGACCCGCCCACAGACCTCAAATTCAAAGGCCCCT
TCACAGATGTAGTCACTACAAATCTTAAGTTGCGAAATCCGTCGGATAGAAAAGTATGTTTCAA
AGTGAAGACGACAGCGCCTCGTCGGTACTGTGTGAGGCCCAACAGTGGAATTATTGACCCGGGG
TTGACTGTGACTGTTTCAGTAATGCTGCAGCCTTTTGACTATGATCCCAACGAAAAGAGTAAAC
ACAAGTTTATGGTACAGACCATTTTTGCTCCACCAAACATTACAGATATGGAAGCTGTGTGGAA
AGAAGCAAAACCTGATGAATTAATGGATTCTAAATTGAGATGTGTGTTTGAAATGCCCAATGAA
AATGATAAATTGAACGACATGGAGCCCAGCAAAGCTGCGCCCCTGAACGCCGCCAAGCAGGATG
GGCCGGTGCCAAAGCCGCACAGTGTTTCCCTCAGCGATGCGGACACCAGGAAGCTGGTGGAGGA
GTGCAAGCGGCTCCAGGGAGAGATGGTGAAGCTGTCGGAGGAGAACCGGCACCTGCGGGATGAA
GGCTTAAGGCTCAGAAAGGTAGCACATTCGGAAAAACCTGGATCCACCTCAGCCGCGTCCTTCA
GAGATAATGTCACCAGCCCTCTTCCTTCACTCCTTGTTGTAATTGCAGCCATTTTCATTGGATT
CTTTCTAGGAAAATTCATCTTGTAGAGTGAAGCATGCAGAGTGCTATTTCTTTTTTTTTCTCCC
GACCAGAAAAAGATTTGTTTACCTACCATCTCACTGGTAGTGTGGCCCACGGTGACCATTCTTT
GTGTGTACAGCGTCATGTAGGCCTCGCCTTTAAAGGTCTCACGGTTAGAAATCAGTAAGAGCAG
AGTGTTCGGCGCCTGGACAGAGTGTACGTGGCCAGACCATCACTAGCAGGTGTCAGTTGCACAT
TCAGTCCTTTATGAAATTCATAAATAAAAAATTGTTCTTTCTTTGTGGTTTTAATAAGAGTTCA
AGAATTGTTCAGAGTCTTGTAAATGTTATTTTAATAATCCCTTTAAATTTTATCTGTTGCTGTT
ACCTCTTGAAATATGATTTATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTAT
TCTGTGGGGAAATGGTGCCTCTTACAGTGTAAATTTTCTCCTTTACCTTTGCTAATATCATGGC
AGAATTTTTCTTATCCCTCGTGAGGCAGTTGTTGACTGAGTTTTTCACCCTTACAATCCTGTCC
CATGGTATTTAACATAAAAATAATAAAACCGTTAACAGATTCTTGCTCGATAGCTTGTGTGTGT
CTGTCATGTCATTAGATGGGATACCAGGGCGTGCGCTGTGGTGATTTGGGTTATAAAATGTGTA
ATTTATCTCACACTGAACCCTTTCATATATTACAGTATTTGCGGGGAAGAGTCCTCATTGTTTT
AAGCAAAGGAATTGATAACATTTCAGGCCGCTTTTGGCATTTTGGAAGATCAAAATCCATTTGT
CTTCGAGATAATATAAAATAAGCAATGAGAATAAAAGTGCTGTGATTTCAGTCA

hide sequence

RefSeq Acc Id:

XM_021096055 ⟹ XP_020951714

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	6	98,212,335 - 98,254,269 (-)	NCBI

Sequence:

show sequence

GGCGCCGAGGATCGCAGTGCGCGCGGCCGCGGCGGCTGGTGTGGGGTTGAGTCAGTTGTGAGAC
CCGGAGCTGCGGACCGGCGGGCGGCCCTCCGAGCCGGCGACACAGCGGTGGGCGTCGGGTTCGG
GAGCCGAGCGCTGGCCCCGCGTCGACCCGGGCCGAGCCGCGCCGCCGCCCCCCGCCCGCAGCCA
CCGACCGGCCGCCGCGGGCGCGCCCCCGCTCTCCGCTGTCTCTCCGATGGCGTCCGCCTCCGGG
GCCATGGCGAAGCACGAGCAGATCCTGGTCCTCGACCCGCCCACAGACCTCAAATTCAAAGTAA
TGCTGCAGCCTTTTGACTATGATCCCAACGAAAAGAGTAAACACAAGTTTATGGTACAGACCAT
TTTTGCTCCACCAAACATTACAGATATGGAAGCTGTGTGGAAAGAAGCAAAACCTGATGAATTA
ATGGATTCTAAATTGAGATGTGTGTTTGAAATGCCCAATGAAAATGATAAATTGGGTACCGCCC
CGCCGGGGACTGCTCTGGCTGCCACTCCACTGAGCACCACCACCAGCACAGTCGCAGCACCTGC
CAGTTATAGCACGAAGAGTGAGCCCAGGGGACTCAGTGTGTTCAAACAGGAGAAGCAGAAGAAC
GACATGGAGCCCAGCAAAGCTGCGCCCCTGAACGCCGCCAAGCAGGATGGGCCGGTGCCAAAGC
CGCACAGTGTTTCCCTCAGCGATGCGGACACCAGGAAGCTGGTGGAGGAGTGCAAGCGGCTCCA
GGGAGAGATGGTGAAGCTGTCGGAGGAGAACCGGCACCTGCGGGATGAAGGCTTAAGGCTCAGA
AAGGTAGCACATTCGGAAAAACCTGGATCCACCTCAGCCGCGTCCTTCAGAGATAATGTCACCA
GCCCTCTTCCTTCACTCCTTGTTGTAATTGCAGCCATTTTCATTGGATTCTTTCTAGGAAAATT
CATCTTGTAGAGTGAAGCATGCAGAGTGCTATTTCTTTTTTTTTCTCCCGACCAGAAAAAGATT
TGTTTACCTACCATCTCACTGGTAGTGTGGCCCACGGTGACCATTCTTTGTGTGTACAGCGTCA
TGTAGGCCTCGCCTTTAAAGGTCTCACGGTTAGAAATCAGTAAGAGCAGAGTGTTCGGCGCCTG
GACAGAGTGTACGTGGCCAGACCATCACTAGCAGGTGTCAGTTGCACATTCAGTCCTTTATGAA
ATTCATAAATAAAAAATTGTTCTTTCTTTGTGGTTTTAATAAGAGTTCAAGAATTGTTCAGAGT
CTTGTAAATGTTATTTTAATAATCCCTTTAAATTTTATCTGTTGCTGTTACCTCTTGAAATATG
ATTTATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTATTCTGTGGGGAAATGG
TGCCTCTTACAGTGTAAATTTTCTCCTTTACCTTTGCTAATATCATGGCAGAATTTTTCTTATC
CCTCGTGAGGCAGTTGTTGACTGAGTTTTTCACCCTTACAATCCTGTCCCATGGTATTTAACAT
AAAAATAATAAAACCGTTAACAGATTCTTGCTCGATAGCTTGTGTGTGTCTGTCATGTCATTAG
ATGGGATACCAGGGCGTGCGCTGTGGTGATTTGGGTTATAAAATGTGTAATTTATCTCACACTG
AACCCTTTCATATATTACAGTATTTGCGGGGAAGAGTCCTCATTGTTTTAAGCAAAGGAATTGA
TAACATTTCAGGCCGCTTTTGGCATTTTGGAAGATCAAAATCCATTTGTCTTCGAGATAATATA
AAATAAGCAATGAGAATAAAAGTGCTGTGATTTCAGTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020951712	(Get FASTA)	NCBI Sequence Viewer
	XP_020951713	(Get FASTA)	NCBI Sequence Viewer
	XP_020951714	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000041371
	ENSSSCP00000041371.1
	ENSSSCP00000053405
	ENSSSCP00000053405.1
	ENSSSCP00000067853.1
	ENSSSCP00005000762.1
	ENSSSCP00015009077.1
	ENSSSCP00025036576.1
	ENSSSCP00025036636.1
	ENSSSCP00030045197.1
	ENSSSCP00030045221.1
	ENSSSCP00030045237.1
	ENSSSCP00035034040.1
	ENSSSCP00035034044.1
	ENSSSCP00035034047.1
	ENSSSCP00040018200.1
	ENSSSCP00040018225.1
	ENSSSCP00040018246.1
	ENSSSCP00045029793.1
	ENSSSCP00045029873.1
	ENSSSCP00045029939.1
	ENSSSCP00055009197.1
	ENSSSCP00055009219.1
	ENSSSCP00055009239.1
	ENSSSCP00060032774.1
	ENSSSCP00060032778.1
	ENSSSCP00060032786.1
	ENSSSCP00065012560.1
	ENSSSCP00065012565.1
	ENSSSCP00065012568.1
	ENSSSCP00070044782.1
	ENSSSCP00070044788.1

RefSeq Acc Id:	XP_020951712 ⟸ XM_021096053
- Peptide Label:	isoform X1
- UniProtKB:	A0A287BBB5 (UniProtKB/TrEMBL), A0A4X1VUA6 (UniProtKB/TrEMBL), A0A8D2C2G5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPN SGIIDPGLTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNITDMEAVWKEAKPDELMDSKLRC VFEMPNENDKLGTAPPGTALAATPLSTTTSTVAAPASYSTKSEPRGLSVFKQEKQKNDMEPSKA APLNAAKQDGPVPKPHSVSLSDADTRKLVEECKRLQGEMVKLSEENRHLRDEGLRLRKVAHSEK PGSTSAASFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL hide sequence

RefSeq Acc Id:	XP_020951714 ⟸ XM_021096055
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D2C2G5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASASGAMAKHEQILVLDPPTDLKFKVMLQPFDYDPNEKSKHKFMVQTIFAPPNITDMEAVWKE AKPDELMDSKLRCVFEMPNENDKLGTAPPGTALAATPLSTTTSTVAAPASYSTKSEPRGLSVFK QEKQKNDMEPSKAAPLNAAKQDGPVPKPHSVSLSDADTRKLVEECKRLQGEMVKLSEENRHLRD EGLRLRKVAHSEKPGSTSAASFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL hide sequence

RefSeq Acc Id:	XP_020951713 ⟸ XM_021096054
- Peptide Label:	isoform X2
- UniProtKB:	A0A287AC42 (UniProtKB/TrEMBL), A0A4X1VRS0 (UniProtKB/TrEMBL), A0A8D0MV63 (UniProtKB/TrEMBL), A0A8D0HYU2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPN SGIIDPGLTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNITDMEAVWKEAKPDELMDSKLRC VFEMPNENDKLNDMEPSKAAPLNAAKQDGPVPKPHSVSLSDADTRKLVEECKRLQGEMVKLSEE NRHLRDEGLRLRKVAHSEKPGSTSAASFRDNVTSPLPSLLVVIAAIFIGFFLGKFIL hide sequence

RefSeq Acc Id:

ENSSSCP00000053405 ⟸ ENSSSCT00000049156

RefSeq Acc Id:

ENSSSCP00000041371 ⟸ ENSSSCT00000061774

RefSeq Acc Id:

ENSSSCP00000067853 ⟸ ENSSSCT00000073065

Protein Domains

MSP

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000038465	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005001055	UniProtKB/TrEMBL
	ENSSSCG00015017274	UniProtKB/TrEMBL
	ENSSSCG00025061366	UniProtKB/TrEMBL
	ENSSSCG00030070174	UniProtKB/TrEMBL
	ENSSSCG00035061154	UniProtKB/TrEMBL
	ENSSSCG00040032177	UniProtKB/TrEMBL
	ENSSSCG00045025157	UniProtKB/TrEMBL
	ENSSSCG00055005963	UniProtKB/TrEMBL
	ENSSSCG00060055673	UniProtKB/TrEMBL
	ENSSSCG00065023101	UniProtKB/TrEMBL
	ENSSSCG00070026375	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000049156	ENTREZGENE
	ENSSSCT00000049156.3	UniProtKB/TrEMBL
	ENSSSCT00000061774	ENTREZGENE
	ENSSSCT00000061774.3	UniProtKB/TrEMBL
	ENSSSCT00000073065.2	UniProtKB/TrEMBL
	ENSSSCT00005001476.1	UniProtKB/TrEMBL
	ENSSSCT00015023300.1	UniProtKB/TrEMBL
	ENSSSCT00025084061.1	UniProtKB/TrEMBL
	ENSSSCT00025084210.1	UniProtKB/TrEMBL
	ENSSSCT00030098190.1	UniProtKB/TrEMBL
	ENSSSCT00030098232.1	UniProtKB/TrEMBL
	ENSSSCT00030098275.1	UniProtKB/TrEMBL
	ENSSSCT00035082142.1	UniProtKB/TrEMBL
	ENSSSCT00035082152.1	UniProtKB/TrEMBL
	ENSSSCT00035082162.1	UniProtKB/TrEMBL
	ENSSSCT00040043382.1	UniProtKB/TrEMBL
	ENSSSCT00040043434.1	UniProtKB/TrEMBL
	ENSSSCT00040043477.1	UniProtKB/TrEMBL
	ENSSSCT00045042896.1	UniProtKB/TrEMBL
	ENSSSCT00045043001.1	UniProtKB/TrEMBL
	ENSSSCT00045043093.1	UniProtKB/TrEMBL
	ENSSSCT00055011618.1	UniProtKB/TrEMBL
	ENSSSCT00055011649.1	UniProtKB/TrEMBL
	ENSSSCT00055011671.1	UniProtKB/TrEMBL
	ENSSSCT00060075850.1	UniProtKB/TrEMBL
	ENSSSCT00060075856.1	UniProtKB/TrEMBL
	ENSSSCT00060075865.1	UniProtKB/TrEMBL
	ENSSSCT00065030729.1	UniProtKB/TrEMBL
	ENSSSCT00065030734.1	UniProtKB/TrEMBL
	ENSSSCT00065030737.1	UniProtKB/TrEMBL
	ENSSSCT00070052868.1	UniProtKB/TrEMBL
	ENSSSCT00070052875.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_fold	UniProtKB/TrEMBL
	MSP_dom	UniProtKB/TrEMBL
	PapD-like_sf	UniProtKB/TrEMBL
	VAP	UniProtKB/TrEMBL
NCBI Gene	VAPA	ENTREZGENE
PANTHER	PTHR10809	UniProtKB/TrEMBL
	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN A	UniProtKB/TrEMBL
Pfam	Motile_Sperm	UniProtKB/TrEMBL
PIRSF	VAMP-associated	UniProtKB/TrEMBL
PROSITE	MSP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49354	UniProtKB/TrEMBL
UniProt	A0A287AC42	ENTREZGENE, UniProtKB/TrEMBL
	A0A287BBB5	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VRS0	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1VUA6	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2RB73_PIG	UniProtKB/TrEMBL
	A0A8D0HYU2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0MV63	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D2C2G5	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:94799	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar