APOD (apolipoprotein D) - Rat Genome Database
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Gene: APOD (apolipoprotein D) Sus scrofa
Analyze
Symbol: APOD
Name: apolipoprotein D
RGD ID: 14273178
Description: ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN aging (ortholog); brain development (ortholog); glucose metabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Injuries (ortholog); gestational diabetes (ortholog); FOUND IN cytoplasm (ortholog); cytosolic ribosome (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13132,514,949 - 132,562,599 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113132,514,546 - 132,562,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213142,076,180 - 142,096,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
APOD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13132,514,949 - 132,562,599 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113132,514,546 - 132,562,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213142,076,180 - 142,096,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3195,568,705 - 195,584,033 (-)EnsemblGRCh38hg38GRCh38
GRCh383195,568,705 - 195,583,940 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373195,295,573 - 195,311,076 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh373195,295,576 - 195,310,811 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363196,776,865 - 196,792,278 (-)NCBINCBI36hg18NCBI36
Celera3193,705,274 - 193,720,781 (-)NCBI
Cytogenetic Map3q29NCBI
HuRef3192,666,066 - 192,681,572 (-)NCBIHuRef
CHM1_13195,258,489 - 195,273,995 (-)NCBICHM1_1
Apod
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,115,010 - 31,133,626 (-)NCBIGRCm39mm39
GRCm381631,296,192 - 31,314,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1631,296,192 - 31,314,808 (-)EnsemblGRCm38mm10GRCm38
MGSCv371631,296,278 - 31,314,682 (-)NCBIGRCm37mm9NCBIm37
MGSCv361631,215,939 - 31,234,343 (-)NCBImm8
Celera1631,811,354 - 31,812,738 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.41NCBI
Apod
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21169,431,261 - 69,452,306 (+)NCBI
Rnor_6.0 Ensembl1172,705,129 - 72,726,301 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01172,705,204 - 72,726,263 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01175,781,496 - 75,804,020 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1168,851,395 - 68,872,467 (+)NCBICelera
Cytogenetic Map11q22NCBI
Apod
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542013,553,058 - 13,573,690 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542013,553,254 - 13,570,357 (+)NCBIChiLan1.0ChiLan1.0
APOD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13203,152,476 - 203,167,888 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,152,476 - 203,168,060 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03192,852,887 - 192,868,233 (-)NCBIMhudiblu_PPA_v0panPan3
APOD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3330,488,135 - 30,509,289 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13330,490,149 - 30,504,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Apod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936833260,798 - 277,060 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOD
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11589,612,210 - 89,624,038 (-)NCBI
ChlSab1.1 Ensembl1589,612,040 - 89,624,012 (-)Ensembl
Apod
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473062,535,005 - 62,552,405 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 3 1 23 2
Low 8 4 4 1 2 1 1
Below cutoff 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000012943   ⟹   ENSSSCP00000012602
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13132,515,701 - 132,562,599 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000033009   ⟹   ENSSSCP00000029314
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13132,514,949 - 132,530,808 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000056505   ⟹   ENSSSCP00000059465
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13132,515,907 - 132,534,530 (-)Ensembl
RefSeq Acc Id: XM_001926063   ⟹   XP_001926098
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113132,514,546 - 132,534,468 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021070086   ⟹   XP_020925745
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113132,514,546 - 132,562,594 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021070087   ⟹   XP_020925746
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113132,514,546 - 132,535,543 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001926098 (Get FASTA)   NCBI Sequence Viewer  
  XP_020925745 (Get FASTA)   NCBI Sequence Viewer  
  XP_020925746 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG41125 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020925745   ⟸   XM_021070086
- Sequence:
RefSeq Acc Id: XP_020925746   ⟸   XM_021070087
- Sequence:
RefSeq Acc Id: XP_001926098   ⟸   XM_001926063
- UniProtKB: F1SQX9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000012602   ⟸   ENSSSCT00000012943
RefSeq Acc Id: ENSSSCP00000059465   ⟸   ENSSSCT00000056505
RefSeq Acc Id: ENSSSCP00000029314   ⟸   ENSSSCT00000033009
Protein Domains
Lipocln_cytosolic_FA-bd_dom


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011831 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070013940 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000012602 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000029314 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000059465 UniProtKB/TrEMBL
  ENSSSCP00070022677 UniProtKB/TrEMBL
  ENSSSCP00070022682 UniProtKB/TrEMBL
  ENSSSCP00070022692 UniProtKB/TrEMBL
  ENSSSCP00070022707 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012943 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000033009 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000056505 UniProtKB/TrEMBL
  ENSSSCT00070027274 UniProtKB/TrEMBL
  ENSSSCT00070027280 UniProtKB/TrEMBL
  ENSSSCT00070027290 UniProtKB/TrEMBL
  ENSSSCT00070027305 UniProtKB/TrEMBL
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro ApoD_vertbrte UniProtKB/TrEMBL
  ApolipopD UniProtKB/TrEMBL
  Calycin UniProtKB/TrEMBL
  Lipocalin_ApoD UniProtKB/TrEMBL
  Lipocalin_CS UniProtKB/TrEMBL
  Lipocln_cytosolic_FA-bd_dom UniProtKB/TrEMBL
KEGG Report ssc:100157318 UniProtKB/TrEMBL
NCBI Gene APOD ENTREZGENE
Pfam Lipocalin UniProtKB/TrEMBL
  Lipocalin_2 UniProtKB/TrEMBL
PIRSF Lipocalin_ApoD UniProtKB/TrEMBL
PRINTS APODVERTBRTE UniProtKB/TrEMBL
  APOLIPOPROTD UniProtKB/TrEMBL
PROSITE LIPOCALIN UniProtKB/TrEMBL
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt A0A287BS37_PIG UniProtKB/TrEMBL
  A0A4X1TYZ9_PIG UniProtKB/TrEMBL
  A0A4X1U1N6_PIG UniProtKB/TrEMBL
  A0A4X1U4K0_PIG UniProtKB/TrEMBL
  A0A5K1TWC1_PIG UniProtKB/TrEMBL
  F1SQX9 ENTREZGENE, UniProtKB/TrEMBL
  Q9GKJ8_PIG UniProtKB/TrEMBL
UniProt Secondary K7GN63 UniProtKB/TrEMBL
VGNC ID VGNC:85422 ENTREZGENE