SLC25A39 (solute carrier family 25 member 39)

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Gene: SLC25A39 (solute carrier family 25 member 39) Sus scrofa

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Symbol:

SLC25A39

Name:

solute carrier family 25 member 39

RGD ID:

14272443

Description:

ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (inferred); glutathione transmembrane transporter activity (inferred); metal ion binding (inferred); INVOLVED IN cellular response to iron ion (inferred); glutathione import into mitochondrion (inferred); heme biosynthetic process (inferred); ASSOCIATED WITH GRN-related frontotemporal lobar degeneration with TDP43 inclusions (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog)

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

mitochondrial glutathione transporter SLC25A39; probable mitochondrial glutathione transporter SLC25A39

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	18,915,422 - 18,919,757 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	18,913,261 - 18,919,761 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	19,275,113 - 19,278,224 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary breast ovarian cancer syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to iron ion (IEA)

glutathione import into mitochondrion (IEA)

heme biosynthetic process (IEA)

import into the mitochondrion (IBA)

mitochondrial transmembrane transport (IEA)

transmembrane transport (IEA)

Cellular Component

mitochondrial inner membrane (IEA,ISO)

mitochondrion (IBA,IEA)

Molecular Function

2 iron, 2 sulfur cluster binding (IEA)

glutathione transmembrane transporter activity (IEA)

metal ion binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

SLC25A39
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	18,915,422 - 18,919,757 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	18,913,261 - 18,919,761 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	19,275,113 - 19,278,224 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC25A39
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	44,319,628 - 44,324,823 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	44,319,625 - 44,324,870 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	42,396,996 - 42,402,191 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	39,752,522 - 39,757,710 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	17	39,105,698 - 39,110,922 (-)	NCBI		Celera
Cytogenetic Map	17	q21.31	NCBI
HuRef	17	38,160,568 - 38,165,792 (-)	NCBI		HuRef
CHM1_1	17	42,632,642 - 42,637,877 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	45,172,706 - 45,177,911 (-)	NCBI		T2T-CHM13v2.0

Slc25a39
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	102,293,795 - 102,299,501 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	102,293,811 - 102,298,772 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	102,402,969 - 102,408,675 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	102,402,985 - 102,407,946 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	102,264,283 - 102,268,831 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	102,219,237 - 102,223,562 (-)	NCBI		MGSCv36	mm8
Celera	11	114,112,330 - 114,116,875 (-)	NCBI		Celera
Cytogenetic Map	11	D	NCBI
cM Map	11	66.29	NCBI

Slc25a39
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	87,862,630 - 87,867,626 (-)	NCBI		GRCr8
mRatBN7.2	10	87,362,494 - 87,367,358 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	87,362,490 - 87,367,260 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	92,399,469 - 92,403,811 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	91,864,707 - 91,869,050 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	87,258,039 - 87,262,382 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	90,351,899 - 90,356,905 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	90,351,900 - 90,356,242 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	90,140,264 - 90,145,213 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	91,510,878 - 91,515,221 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	91,525,248 - 91,529,591 (-)	NCBI
Celera	10	86,071,657 - 86,076,000 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Slc25a39
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	17,352,796 - 17,355,551 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	17,352,853 - 17,356,466 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A39
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	20,585,958 - 20,591,211 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	22,550,348 - 22,555,570 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	13,075,241 - 13,080,463 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	13,240,655 - 13,245,878 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	13,240,676 - 13,245,878 (+)	Ensembl	panpan1.1		panPan2

SLC25A39
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	19,103,104 - 19,107,691 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	19,102,787 - 19,107,694 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	18,492,269 - 18,496,850 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	19,796,901 - 19,801,482 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	19,796,900 - 19,801,481 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	18,650,683 - 18,655,262 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	18,833,837 - 18,838,418 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	18,978,197 - 18,982,779 (+)	NCBI		UU_Cfam_GSD_1.0

Slc25a39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	18,423,916 - 18,425,541 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	769,064 - 770,686 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	769,056 - 770,682 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC25A39
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	62,068,307 - 62,074,359 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	62,069,127 - 62,074,579 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	32,837,258 - 32,843,086 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc25a39
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	717,154 - 723,125 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	717,158 - 720,626 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in SLC25A39
166 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK395099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU468984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01009613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000030896 ⟹ ENSSSCP00000024819

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	18,915,433 - 18,919,756 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000040734 ⟹ ENSSSCP00000058762

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	18,914,434 - 18,919,183 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000061128 ⟹ ENSSSCP00000031971

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	18,915,422 - 18,919,757 (+)	Ensembl

RefSeq Acc Id:

NM_001244966 ⟹ NP_001231895

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	18,915,541 - 18,919,752 (+)	NCBI

Sequence:

show sequence

TTTTTTCCGAGCACCGGCCAAGAGCCAGAACTGAAGCTGCGAGATGGCCGAGCAGGACCCCGGG
GGCATCAGCCCCCTCCAGCAAATGGTGGCATCAGGCGCTGGGGCTGTGGTCACCTCTCTCTTCA
TGACCCCCCTGGATGTGGTGAAGGTCCGCCTGCAGTCTCAGCGCCCCTCGGTGGCCAGTGAGCT
GATGCCTCCATCCAGACTCTGGAGCCTCTCCTACGCCAAATTGCCCTCCTCTCTCCAATCCACA
GGGAAGTGCTTCCTGTACTGCAATGGTGTCCTAGAGCCCCTGTACCTGTGCCCGAATGGTACTC
GCTGTGCCACCTGGTTTCAGGACCCCACTCGCCTCACTGGCACCGTGGATGCCTTTGTGAAGAT
CGTGAGACACGAGGGCACCAGGACCCTGTGGAGTGGCCTCCCAGCCACCCTGGTGATGACTGTG
CCAGCCACTGCCGTCTACTTCACCGCCTACGACCAACTCAAGGCCTTCCTGTGTGGGCGAGCCC
TGACCTCTGACCTCTATGCGCCCATGGTGGCTGGCGCCCTGGCCCGCCTGGGCACCGTGACTGT
GATCAGTCCCTTGGAGCTGGTTCGAACAAAGCTGCAGGCTCAGCATCTGTCGTACCGGGAGCTG
GGCACCTGCGTCCGAGCTGCTGTGGCTCAGGGCGGCTGGCGCTCACTGTGGCTGGGCTGGGGTC
CCACTGCCCTCCGCGATGTGCCCTTCTCAGCCCTGTATTGGTTCAACTACGAGCTGGTGAAGAG
CTGGCTGACTGCGTTCAGGCCAAAGGACCCAACCTCCGTGGGCATCAGCTTTGTGGCTGGCGGC
ATCTCAGGGACGGTGGCGGCCATCCTGACTCTACCCTTCGACGTGGTGAAGACTCAACGCCAGG
TCGCGCTTGGAGCGGTGGAGGCTGTGAGAGTGACGCCCCCGCGCGCCATCTCCACCTGGCTGCT
GCTGCAGAGGATCCGGGCCGAGTCGGGCACCAGGGGGCTCTTTGCAGGCTTCCTCCCGAGGATC
GTCAAGGCCGCCCCCTCCTGCGCCATCATGATCAGCACGTATGAGTTCGGCAAAAGCTTCTTCC
AGAGGCTCAACCGGGAACAGCCTCTGGGCCCTTGAAAGGAGTGAGGGGACAGGGACCCCATCTC
TTCCACGGGTGGGGTGAGGCAGGAGGAGACTGAGCCAAGTGCCTTTTCCTCAGCACTGAGGGGA
GGGGCCCCGTTTCTCTTTCCTCTCCGCTCTGAGCCCCAGGCCCCCCACCCCAGACCACTTTCTT
CCTGCTGCTCCCCATTCCCCAGCCCCGTGAATCATCTCTCCCCCCCACGTTCAAGACCAAATCT
GCTAACTACCCGCACCCCCCATTCCCTGGTGTATCTGCTGTAGCCGGGCCTGCCCCTGAAAGCC
TGCGGGCCTGGCGTGGTCTGCACCCGCCTCTGTTAATTCCTTGAGTCTAAAGATGATAAACTTC
AAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021066107 ⟹ XP_020921766

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	18,913,261 - 18,919,761 (+)	NCBI

Sequence:

show sequence

GAATTTGTTTGTCCATCTGACAAGGAGGCCAGCGAGGAGGCCAGATACCATTAGGTGTGCTGTC
AGTGTGGACGGTGGCTGAGCCGGTCAGGACAGCGCCACAGCGCCGCCTCCTGTGGCCTCTAGCC
TTGCTTCTCAGGACGGCAGAACTGAAGCTGCGAGATGGCCGAGCAGGACCCCGGGGGCATCAGC
CCCCTCCAGCAAATGGTGGCATCAGGCGCTGGGGCTGTGGTCACCTCTCTCTTCATGACCCCCC
TGGATGTGGTGAAGGTCCGCCTGCAGTCTCAGCGCCCCTCGGTGGCCAGTGAGCTGATGCCTCC
ATCCAGACTCTGGAGCCTCTCCTACGCCAAATTGCCCTCCTCTCTCCAATCCACAGGGAAGTGC
TTCCTGTACTGCAATGGTGTCCTAGAGCCCCTGTACCTGTGCCCGAATGGTACTCGCTGTGCCA
CCTGGTTTCAGGACCCCACTCGCTTCACTGGCACCGTGGATGCCTTTGTGAAGATCGTGAGACA
CGAGGGCACCAGGACCCTGTGGAGTGGCCTCCCAGCCACCCTGGTGATGACTGTGCCAGCCACT
GCCGTCTACTTCACCGCCTACGACCAACTCAAGGCCTTCCTGTGTGGGCGAGCCCTGACCTCTG
ACCTCTATGCGCCCATGGTGGCTGGCGCCCTGGCCCGCCTGGGCACCGTGACTGTGATCAGTCC
CTTGGAGCTGGTTCGAACAAAGCTGCAGGCTCAGCATCTGTCGTACCGGGAGCTGGGCACCTGC
GTCCGAGCTGCTGTGGCTCAGGGCGGCTGGCGCTCACTGTGGCTGGGCTGGGGTCCCACTGCCC
TCCGCGATGTGCCCTTCTCAGCCCTGTATTGGTTCAACTACGAGCTGGTGAAGAGCTGGCTGAC
TGCGTTCAGGCCAAAGGACCCAACCTCCGTGGGCATCAGCTTTGTGGCTGGCGGCATCTCAGGG
ACGGTGGCGGCCATCCTGACTCTACCCTTCGACGTGGTGAAGACTCAACGCCAGGTCGCGCTTG
GAGCGGTGGAGGCTGTGAGAGTGACGCCCCCGCGCGCCATCTCCACCTGGCTGCTGCTGCAGAG
GATCCGGGCCGAGTCGGGCACCAGGGGGCTCTTTGCAGGCTTCCTCCCGAGGATCGTCAAGGCC
GCCCCCTCCTGCGCCATCATGATCAGCACGTATGAGTTCGGCAAAAGCTTCTTCCAGAGGCTCA
ACCGGGAACAGCCTCTGGGCCCTTGAAAGGAGTGAGGGGACAGGGACCCCATCTCTTCCACGGG
TGGGGTGAGGCAGGAGGAGACTGAGCCAAGTGCCTTTTCCTCAGCACTGAGGGGAGGGGCCCCG
TTTCTCTTTCCTCTCCGCTCTGAGCCCCAGGCCCCCCACCCCAGACCTCTTCCTGCTGCTCCCC
ATTCCCCAGCCCCGTGAATCATCTCTCCCCCCCACGTTCAAGACCAAATCTGCTAACTACCCGC
ACCCCCCATTCCCTGGTGTGTCTGCTGTAGCCGGGCCTGCCCCTGAAAGCCTGCGGGCCTGGCG
TGGTCTGCACCCGCCTCTGTTAATTCCTTGAGTCTAAAGATGATAAACTTCTTTCCAGTG

hide sequence

RefSeq Acc Id:

XM_021066108 ⟹ XP_020921767

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	18,915,427 - 18,919,761 (+)	NCBI

Sequence:

show sequence

CGGGGCGAGCTCCGCCGCTTTCCGAGTCGGCCTTGCTGCCCGGTGAGGGCTCGCGGAGCCCGCA
CCGGCCGCGGAGCCGCTATGGGCCCGCCCGGCCCCGGGCGCCGCGGCGCGCGAGCACCGGCCAA
GAGCCAGAACTGAAGCTGCGAGATGGCCGAGCAGGACCCCGGGGGCATCAGCCCCCTCCAGCAA
ATGGTGGCATCAGGCGCTGGGGCTGTGGTCACCTCTCTCTTCATGACCCCCCTGGATGTGGTGA
AGGTCCGCCTGCAGTCTCAGCGCCCCTCGGTGGCCAGTGAGCTGATGCCTCCATCCAGACTCTG
GAGCCTCTCCTACGCCAAATGGAAGTGCTTCCTGTACTGCAATGGTGTCCTAGAGCCCCTGTAC
CTGTGCCCGAATGGTACTCGCTGTGCCACCTGGTTTCAGGACCCCACTCGCTTCACTGGCACCG
TGGATGCCTTTGTGAAGATCGTGAGACACGAGGGCACCAGGACCCTGTGGAGTGGCCTCCCAGC
CACCCTGGTGATGACTGTGCCAGCCACTGCCGTCTACTTCACCGCCTACGACCAACTCAAGGCC
TTCCTGTGTGGGCGAGCCCTGACCTCTGACCTCTATGCGCCCATGGTGGCTGGCGCCCTGGCCC
GCCTGGGCACCGTGACTGTGATCAGTCCCTTGGAGCTGGTTCGAACAAAGCTGCAGGCTCAGCA
TCTGTCGTACCGGGAGCTGGGCACCTGCGTCCGAGCTGCTGTGGCTCAGGGCGGCTGGCGCTCA
CTGTGGCTGGGCTGGGGTCCCACTGCCCTCCGCGATGTGCCCTTCTCAGCCCTGTATTGGTTCA
ACTACGAGCTGGTGAAGAGCTGGCTGACTGCGTTCAGGCCAAAGGACCCAACCTCCGTGGGCAT
CAGCTTTGTGGCTGGCGGCATCTCAGGGACGGTGGCGGCCATCCTGACTCTACCCTTCGACGTG
GTGAAGACTCAACGCCAGGTCGCGCTTGGAGCGGTGGAGGCTGTGAGAGTGACGCCCCCGCGCG
CCATCTCCACCTGGCTGCTGCTGCAGAGGATCCGGGCCGAGTCGGGCACCAGGGGGCTCTTTGC
AGGCTTCCTCCCGAGGATCGTCAAGGCCGCCCCCTCCTGCGCCATCATGATCAGCACGTATGAG
TTCGGCAAAAGCTTCTTCCAGAGGCTCAACCGGGAACAGCCTCTGGGCCCTTGAAAGGAGTGAG
GGGACAGGGACCCCATCTCTTCCACGGGTGGGGTGAGGCAGGAGGAGACTGAGCCAAGTGCCTT
TTCCTCAGCACTGAGGGGAGGGGCCCCGTTTCTCTTTCCTCTCCGCTCTGAGCCCCAGGCCCCC
CACCCCAGACCTCTTCCTGCTGCTCCCCATTCCCCAGCCCCGTGAATCATCTCTCCCCCCCACG
TTCAAGACCAAATCTGCTAACTACCCGCACCCCCCATTCCCTGGTGTGTCTGCTGTAGCCGGGC
CTGCCCCTGAAAGCCTGCGGGCCTGGCGTGGTCTGCACCCGCCTCTGTTAATTCCTTGAGTCTA
AAGATGATAAACTTCTTTCCAGTG

hide sequence

RefSeq Acc Id:

XM_021066109 ⟹ XP_020921768

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	18,916,432 - 18,919,761 (+)	NCBI

Sequence:

show sequence

CCAGAACTGAAGCTGCGAGATGGCCGAGCAGGACCCCGGGGGCATCAGCCCCCTCCAGCAAATG
GTGGCATCAGGCGCTGGGGCTGTGGTCACCTCTCTCTTCATGACCCCCCTGGATGTGGTGAAGG
TCCGCCTGCAGTCTCAGCGCCCCTCGGTGGCCAGTGAGCTGATGCCTCCATCCAGACTCTGGAG
CCTCTCCTACGCCAAATGGAAGTGCTTCCTGTACTGCAATGGTGTCCTAGAGCCCCTGTACCTG
TGCCCGAATGGTACTCGCTGTGCCACCTGGTTTCAGGACCCCACTCGCTTCACTGGCACCGTGG
ATGCCTTTGTGAAGATCGTGAGACACGAGGGCACCAGGACCCTGTGGAGTGGCCTCCCAGCCAC
CCTGGTGATGACTGTGCCAGCCACTGCCGTCTACTTCACCGCCTACGACCAACTCAAGGCCTTC
CTGTGTGGGCGAGCCCTGACCTCTGACCTCTATGCGCCCATGGTGGCTGGCGCCCTGGCCCGCC
TGGGCACCGTGACTGTGATCAGTCCCTTGGAGCTGGTTCGAACAAAGCTGCAGGCTCAGCATCT
GTCGTACCGGGAGCTGGGCACCTGCGTCCGAGCTGCTGTGGCTCAGGGCGGCTGGCGCTCACTG
TGGCTGGGCTGGGGTCCCACTGCCCTCCGCGATGTGCCCTTCTCAGCCCTGTATTGGTTCAACT
ACGAGCTGGTGAAGAGCTGGCTGACTGCGTTCAGGCCAAAGGACCCAACCTCCGTGGGCATCAG
CTTTGTGGCTGGCGGCATCTCAGGGACGGTGGCGGCCATCCTGACTCTACCCTTCGACGTGGTG
AAGACTCAACGCCAGGTCGCGCTTGGAGCGGTGGAGGCTGTGAGAGTGACGCCCCCGCGCGCCA
TCTCCACCTGGCTGCTGCTGCAGAGGATCCGGGCCGAGTCGGGCACCAGGGGGCTCTTTGCAGG
CTTCCTCCCGAGGATCGTCAAGGCCGCCCCCTCCTGCGCCATCATGATCAGCACGTATGAGTTC
GGCAAAAGCTTCTTCCAGAGGCTCAACCGGGAACAGCCTCTGGGCCCTTGAAAGGAGTGAGGGG
ACAGGGACCCCATCTCTTCCACGGGTGGGGTGAGGCAGGAGGAGACTGAGCCAAGTGCCTTTTC
CTCAGCACTGAGGGGAGGGGCCCCGTTTCTCTTTCCTCTCCGCTCTGAGCCCCAGGCCCCCCAC
CCCAGACCTCTTCCTGCTGCTCCCCATTCCCCAGCCCCGTGAATCATCTCTCCCCCCCACGTTC
AAGACCAAATCTGCTAACTACCCGCACCCCCCATTCCCTGGTGTGTCTGCTGTAGCCGGGCCTG
CCCCTGAAAGCCTGCGGGCCTGGCGTGGTCTGCACCCGCCTCTGTTAATTCCTTGAGTCTAAAG
ATGATAAACTTCTTTCCAGTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231895	(Get FASTA)	NCBI Sequence Viewer
	XP_020921766	(Get FASTA)	NCBI Sequence Viewer
	XP_020921767	(Get FASTA)	NCBI Sequence Viewer
	XP_020921768	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000024819
	ENSSSCP00000024819.2
	ENSSSCP00000031971
	ENSSSCP00000031971.2
	ENSSSCP00015045599.1
	ENSSSCP00015045637.1
	ENSSSCP00015045669.1
	ENSSSCP00025030566.1
	ENSSSCP00025030636.1
	ENSSSCP00025030709.1
	ENSSSCP00030040212.1
	ENSSSCP00030040227.1
	ENSSSCP00035043681.1
	ENSSSCP00035043690.1
	ENSSSCP00040024773.1
	ENSSSCP00040024875.1
	ENSSSCP00045019470.1
	ENSSSCP00045019520.1
	ENSSSCP00050031930.1
	ENSSSCP00050031932.1
	ENSSSCP00055033937.1
	ENSSSCP00055034024.1
	ENSSSCP00060046282.1
	ENSSSCP00060046296.1
	ENSSSCP00065047162.1
	ENSSSCP00065047164.1
	ENSSSCP00065047180.1
	ENSSSCP00070016125.1
	ENSSSCP00070016128.1
	ENSSSCP00070016139.1
	ENSSSCP00070016152.1

RefSeq Acc Id:	XP_020921766 ⟸ XM_021066107
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1TLW0 (UniProtKB/TrEMBL), I3LL52 (UniProtKB/TrEMBL), A0A8D1KC77 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEQDPGGISPLQQMVASGAGAVVTSLFMTPLDVVKVRLQSQRPSVASELMPPSRLWSLSYAKL PSSLQSTGKCFLYCNGVLEPLYLCPNGTRCATWFQDPTRFTGTVDAFVKIVRHEGTRTLWSGLP ATLVMTVPATAVYFTAYDQLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQ HLSYRELGTCVRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLTAFRPKDPTSVG ISFVAGGISGTVAAILTLPFDVVKTQRQVALGAVEAVRVTPPRAISTWLLLQRIRAESGTRGLF AGFLPRIVKAAPSCAIMISTYEFGKSFFQRLNREQPLGP hide sequence

RefSeq Acc Id:	XP_020921767 ⟸ XM_021066108
- Peptide Label:	isoform X2
- UniProtKB:	A0A480F6F1 (UniProtKB/TrEMBL), A0A4X1TLR5 (UniProtKB/TrEMBL), A0A480VNL9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEQDPGGISPLQQMVASGAGAVVTSLFMTPLDVVKVRLQSQRPSVASELMPPSRLWSLSYAKW KCFLYCNGVLEPLYLCPNGTRCATWFQDPTRFTGTVDAFVKIVRHEGTRTLWSGLPATLVMTVP ATAVYFTAYDQLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQHLSYRELG TCVRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLTAFRPKDPTSVGISFVAGGI SGTVAAILTLPFDVVKTQRQVALGAVEAVRVTPPRAISTWLLLQRIRAESGTRGLFAGFLPRIV KAAPSCAIMISTYEFGKSFFQRLNREQPLGP hide sequence

RefSeq Acc Id:

NP_001231895 ⟸ NM_001244966

- UniProtKB:

A0A8D1KC77 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAEQDPGGISPLQQMVASGAGAVVTSLFMTPLDVVKVRLQSQRPSVASELMPPSRLWSLSYAKL
PSSLQSTGKCFLYCNGVLEPLYLCPNGTRCATWFQDPTRLTGTVDAFVKIVRHEGTRTLWSGLP
ATLVMTVPATAVYFTAYDQLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQ
HLSYRELGTCVRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLTAFRPKDPTSVG
ISFVAGGISGTVAAILTLPFDVVKTQRQVALGAVEAVRVTPPRAISTWLLLQRIRAESGTRGLF
AGFLPRIVKAAPSCAIMISTYEFGKSFFQRLNREQPLGP

hide sequence

RefSeq Acc Id:	XP_020921768 ⟸ XM_021066109
- Peptide Label:	isoform X2
- UniProtKB:	A0A480F6F1 (UniProtKB/TrEMBL), A0A4X1TLR5 (UniProtKB/TrEMBL), A0A480VNL9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAEQDPGGISPLQQMVASGAGAVVTSLFMTPLDVVKVRLQSQRPSVASELMPPSRLWSLSYAKW KCFLYCNGVLEPLYLCPNGTRCATWFQDPTRFTGTVDAFVKIVRHEGTRTLWSGLPATLVMTVP ATAVYFTAYDQLKAFLCGRALTSDLYAPMVAGALARLGTVTVISPLELVRTKLQAQHLSYRELG TCVRAAVAQGGWRSLWLGWGPTALRDVPFSALYWFNYELVKSWLTAFRPKDPTSVGISFVAGGI SGTVAAILTLPFDVVKTQRQVALGAVEAVRVTPPRAISTWLLLQRIRAESGTRGLFAGFLPRIV KAAPSCAIMISTYEFGKSFFQRLNREQPLGP hide sequence

Ensembl Acc Id:

ENSSSCP00000024819 ⟸ ENSSSCT00000030896

Ensembl Acc Id:

ENSSSCP00000058762 ⟸ ENSSSCT00000040734

Ensembl Acc Id:

ENSSSCP00000031971 ⟸ ENSSSCT00000061128

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000030167	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015079423	UniProtKB/TrEMBL
	ENSSSCG00025051749	UniProtKB/TrEMBL
	ENSSSCG00030062216	UniProtKB/TrEMBL
	ENSSSCG00035075360	UniProtKB/TrEMBL
	ENSSSCG00040044013	UniProtKB/TrEMBL
	ENSSSCG00045016546	UniProtKB/TrEMBL
	ENSSSCG00050054346	UniProtKB/TrEMBL
	ENSSSCG00055021679	UniProtKB/TrEMBL
	ENSSSCG00060076711	UniProtKB/TrEMBL
	ENSSSCG00065076769	UniProtKB/TrEMBL
	ENSSSCG00070009974	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000030896	ENTREZGENE
	ENSSSCT00000030896.4	UniProtKB/TrEMBL
	ENSSSCT00000061128	ENTREZGENE
	ENSSSCT00000061128.3	UniProtKB/TrEMBL
	ENSSSCT00015107771.1	UniProtKB/TrEMBL
	ENSSSCT00015107836.1	UniProtKB/TrEMBL
	ENSSSCT00015107893.1	UniProtKB/TrEMBL
	ENSSSCT00025070734.1	UniProtKB/TrEMBL
	ENSSSCT00025070861.1	UniProtKB/TrEMBL
	ENSSSCT00025070987.1	UniProtKB/TrEMBL
	ENSSSCT00030087112.1	UniProtKB/TrEMBL
	ENSSSCT00030087136.1	UniProtKB/TrEMBL
	ENSSSCT00035102410.1	UniProtKB/TrEMBL
	ENSSSCT00035102426.1	UniProtKB/TrEMBL
	ENSSSCT00040059108.1	UniProtKB/TrEMBL
	ENSSSCT00040059311.1	UniProtKB/TrEMBL
	ENSSSCT00045028165.1	UniProtKB/TrEMBL
	ENSSSCT00045028241.1	UniProtKB/TrEMBL
	ENSSSCT00050074098.1	UniProtKB/TrEMBL
	ENSSSCT00050074100.1	UniProtKB/TrEMBL
	ENSSSCT00055042645.1	UniProtKB/TrEMBL
	ENSSSCT00055042760.1	UniProtKB/TrEMBL
	ENSSSCT00060105349.1	UniProtKB/TrEMBL
	ENSSSCT00060105366.1	UniProtKB/TrEMBL
	ENSSSCT00065106095.1	UniProtKB/TrEMBL
	ENSSSCT00065106097.1	UniProtKB/TrEMBL
	ENSSSCT00065106118.1	UniProtKB/TrEMBL
	ENSSSCT00070019380.1	UniProtKB/TrEMBL
	ENSSSCT00070019383.1	UniProtKB/TrEMBL
	ENSSSCT00070019395.1	UniProtKB/TrEMBL
	ENSSSCT00070019409.1	UniProtKB/TrEMBL
Gene3D-CATH	1.50.40.10	UniProtKB/TrEMBL
InterPro	Mit_carrier	UniProtKB/TrEMBL
	Mitochondrial_sb/sol_carrier	UniProtKB/TrEMBL
	Mt_carrier_dom_sf	UniProtKB/TrEMBL
	Mtm1-like	UniProtKB/TrEMBL
NCBI Gene	SLC25A39	ENTREZGENE
PANTHER	PTHR45760	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 25 MEMBER 39	UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/TrEMBL
PRINTS	MITOCARRIER	UniProtKB/TrEMBL
PROSITE	SOLCAR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF103506	UniProtKB/TrEMBL
UniProt	A0A286ZK84_PIG	UniProtKB/TrEMBL
	A0A480F6F1	ENTREZGENE, UniProtKB/TrEMBL
	A0A480VNL9	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TJG1_PIG	UniProtKB/TrEMBL
	A0A4X1TLR5	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1TLW0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0Q9E3_PIG	UniProtKB/TrEMBL
	A0A8D0UUK0_PIG	UniProtKB/TrEMBL
	A0A8D1KC77	ENTREZGENE, UniProtKB/TrEMBL
	I3LL52	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:93014	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar