RBM8A (RNA binding motif protein 8A) - Rat Genome Database

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Gene: RBM8A (RNA binding motif protein 8A) Sus scrofa
Analyze
Symbol: RBM8A
Name: RNA binding motif protein 8A
RGD ID: 14271814
Description: ENCODES a protein that exhibits mRNA binding (inferred); nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); mRNA transport (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN dendrite (ortholog); exon-exon junction complex (ortholog); exon-exon junction subcomplex mago-y14 (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 8A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,408,466 - 99,413,492 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,408,422 - 99,411,964 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,051,095 - 109,052,810 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBM8A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl499,408,466 - 99,413,492 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1499,408,422 - 99,411,964 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24109,051,095 - 109,052,810 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM8A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381145,921,556 - 145,927,484 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1145,921,556 - 145,927,678 (-)EnsemblGRCh38hg38GRCh38
GRCh371145,507,609 - 145,513,536 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361144,218,995 - 144,222,801 (+)NCBINCBI36Build 36hg18NCBI36
Build 341142,996,681 - 143,000,488NCBI
Celera1119,710,991 - 119,714,797 (+)NCBICelera
Cytogenetic Map1q21.1NCBI
HuRef1119,471,247 - 119,477,227 (+)NCBIHuRef
CHM1_11147,289,682 - 147,295,662 (-)NCBICHM1_1
T2T-CHM13v2.01145,038,375 - 145,044,303 (-)NCBIT2T-CHM13v2.0
Rbm8a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39396,537,244 - 96,541,107 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl396,537,249 - 96,541,107 (+)EnsemblGRCm39 Ensembl
GRCm38396,629,928 - 96,633,791 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl396,629,933 - 96,633,791 (+)EnsemblGRCm38mm10GRCm38
MGSCv37396,433,851 - 96,437,714 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36396,715,338 - 96,718,315 (+)NCBIMGSCv36mm8
Celera398,036,943 - 98,040,803 (+)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.93NCBI
Rbm8a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,854,018 - 186,856,802 (+)NCBIGRCr8
mRatBN7.22184,165,189 - 184,167,959 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2184,165,193 - 184,167,959 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2191,836,736 - 191,839,615 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02189,629,548 - 189,632,424 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02184,469,293 - 184,472,172 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02198,755,261 - 198,758,028 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2198,755,262 - 198,758,028 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02218,242,195 - 218,244,962 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42191,429,805 - 191,432,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12191,392,562 - 191,394,768 (+)NCBI
Celera2176,690,271 - 176,693,037 (+)NCBICelera
Cytogenetic Map2q34NCBI
Rbm8a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955568164,050 - 166,162 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955568164,050 - 166,162 (+)NCBIChiLan1.0ChiLan1.0
RBM8A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21103,319,979 - 103,321,749 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11102,908,347 - 102,910,153 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01121,830,424 - 121,836,378 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11113,834,110 - 113,839,429 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1113,834,110 - 113,839,429 (-)Ensemblpanpan1.1panPan2
RBM8A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11758,722,449 - 58,726,017 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1758,724,227 - 58,725,969 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1758,190,496 - 58,194,070 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01759,719,316 - 59,722,888 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1759,717,932 - 59,722,853 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11758,592,052 - 58,595,627 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01758,653,189 - 58,656,764 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01759,379,610 - 59,383,186 (-)NCBIUU_Cfam_GSD_1.0
Rbm8a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505820,790,095 - 20,791,757 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936867666,199 - 667,828 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936867666,208 - 667,851 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM8A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12012,819,891 - 12,821,656 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2012,819,956 - 12,821,629 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603815,498,984 - 15,502,718 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm8a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477217,286,957 - 17,295,135 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477217,286,950 - 17,289,143 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RBM8A
81 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 1
Low 10 4 3 4 1 22 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000022923   ⟹   ENSSSCP00000023758
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl499,408,498 - 99,413,492 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000039777   ⟹   ENSSSCP00000059061
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl499,408,466 - 99,411,959 (+)Ensembl
RefSeq Acc Id: XM_001927860   ⟹   XP_001927895
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1499,408,422 - 99,411,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005663525   ⟹   XP_005663582
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1499,408,422 - 99,411,964 (+)NCBI
Sequence:
RefSeq Acc Id: XP_001927895   ⟸   XM_001927860
- Peptide Label: isoform X1
- UniProtKB: I3LI59 (UniProtKB/TrEMBL),   A0A4X1SJG3 (UniProtKB/TrEMBL),   A0A4X1SJ91 (UniProtKB/TrEMBL),   A0A8D1IM57 (UniProtKB/TrEMBL),   A0A8D1IRI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005663582   ⟸   XM_005663525
- Peptide Label: isoform X2
- UniProtKB: A0A4X1SJ91 (UniProtKB/TrEMBL),   A0A8D1IRI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000059061   ⟸   ENSSSCT00000039777
RefSeq Acc Id: ENSSSCP00000023758   ⟸   ENSSSCT00000022923
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028509 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005024531 UniProtKB/TrEMBL
  ENSSSCG00015037775 UniProtKB/TrEMBL
  ENSSSCG00025068752 UniProtKB/TrEMBL
  ENSSSCG00030070154 UniProtKB/TrEMBL
  ENSSSCG00035070155 UniProtKB/TrEMBL
  ENSSSCG00040050619 UniProtKB/TrEMBL
  ENSSSCG00045031040 UniProtKB/TrEMBL
  ENSSSCG00050074645 UniProtKB/TrEMBL
  ENSSSCG00060026267 UniProtKB/TrEMBL
  ENSSSCG00065000342 UniProtKB/TrEMBL
  ENSSSCG00070001621 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022923 ENTREZGENE
  ENSSSCT00000022923.3 UniProtKB/TrEMBL
  ENSSSCT00000039777.3 UniProtKB/TrEMBL
  ENSSSCT00005039181.1 UniProtKB/TrEMBL
  ENSSSCT00005039249.1 UniProtKB/TrEMBL
  ENSSSCT00015050651.1 UniProtKB/TrEMBL
  ENSSSCT00025094516.1 UniProtKB/TrEMBL
  ENSSSCT00025094656.1 UniProtKB/TrEMBL
  ENSSSCT00030098175.1 UniProtKB/TrEMBL
  ENSSSCT00035094846.1 UniProtKB/TrEMBL
  ENSSSCT00040068316.1 UniProtKB/TrEMBL
  ENSSSCT00040068465.1 UniProtKB/TrEMBL
  ENSSSCT00040068659.1 UniProtKB/TrEMBL
  ENSSSCT00045053026.1 UniProtKB/TrEMBL
  ENSSSCT00045053139.1 UniProtKB/TrEMBL
  ENSSSCT00050102193.1 UniProtKB/TrEMBL
  ENSSSCT00060035576.1 UniProtKB/TrEMBL
  ENSSSCT00065000397.1 UniProtKB/TrEMBL
  ENSSSCT00065000412.1 UniProtKB/TrEMBL
  ENSSSCT00070003015.1 UniProtKB/TrEMBL
  ENSSSCT00070003027.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RNA-bd_8 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_RBM8 UniProtKB/TrEMBL
KEGG Report ssc:100156173 UniProtKB/TrEMBL
NCBI Gene RBM8A ENTREZGENE
PANTHER PTHR45894 UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 8A UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PRINTS RNABINDINGM8 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A287BSF2_PIG UniProtKB/TrEMBL
  A0A4X1SJ91 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SJG3 ENTREZGENE
  A0A8D1IM57 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1IRI9 ENTREZGENE, UniProtKB/TrEMBL
  I3LI59 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1SJG3 UniProtKB/TrEMBL
VGNC ID VGNC:92162 ENTREZGENE