DPPA3 (developmental pluripotency associated 3) - Rat Genome Database

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Gene: DPPA3 (developmental pluripotency associated 3) Sus scrofa
Analyze
Symbol: DPPA3
Name: developmental pluripotency associated 3
RGD ID: 14271203
Description: ENCODES a protein that exhibits methylated histone binding (ortholog); INVOLVED IN embryonic cleavage (ortholog); negative regulation of DNA demethylation (ortholog); protection of DNA demethylation of female pronucleus (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); Germ Cell and Embryonal Neoplasms (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); FOUND IN cytoplasm (ortholog); female pronucleus (ortholog); male pronucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: developmental pluripotency-associated protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1562,861,492 - 62,868,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,691,481 - 65,702,154 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:27566850  


Genomics

Comparative Map Data
DPPA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1562,861,492 - 62,868,131 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,691,481 - 65,702,154 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DPPA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl127,711,433 - 7,717,559 (+)EnsemblGRCh38hg38GRCh38
GRCh38127,711,433 - 7,717,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37127,864,029 - 7,870,155 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,755,356 - 7,761,422 (+)NCBINCBI36hg18NCBI36
Build 34127,755,355 - 7,761,417NCBI
Celera129,442,212 - 9,448,285 (+)NCBI
Cytogenetic Map12p13.31NCBI
HuRef127,678,041 - 7,684,114 (+)NCBIHuRef
CHM1_1127,862,915 - 7,869,510 (+)NCBICHM1_1
Dppa3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,603,383 - 122,607,230 (+)NCBIGRCm39mm39
GRCm39 Ensembl6122,603,369 - 122,607,231 (+)Ensembl
GRCm386122,626,424 - 122,630,271 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,626,410 - 122,630,272 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,576,442 - 122,580,289 (+)NCBIGRCm37mm9NCBIm37
MGSCv366122,592,043 - 122,595,890 (+)NCBImm8
Celera6124,426,164 - 124,430,002 (+)NCBICelera
Cytogenetic Map6F1NCBI
Dppa3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24155,851,461 - 155,854,845 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl4155,815,296 - 155,854,861 (+)Ensembl
Rnor_6.04155,437,675 - 155,441,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,437,675 - 155,440,828 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,298,713 - 111,299,189 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04222,459,195 - 222,464,881 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,083,360 - 159,086,744 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14159,328,295 - 159,331,696 (+)NCBI
Celera4144,670,614 - 144,673,998 (+)NCBICelera
Cytogenetic Map4q42NCBI
DPPA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1127,994,606 - 8,000,731 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0127,834,298 - 7,841,064 (+)NCBIMhudiblu_PPA_v0panPan3
DPPA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,114,192 - 37,196,434 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,417,788 - 9,502,171 (-)NCBI
ROS_Cfam_1.02737,463,510 - 37,549,060 (+)NCBI
UMICH_Zoey_3.12737,344,581 - 37,429,586 (+)NCBI
UNSW_CanFamBas_1.02737,379,470 - 37,464,429 (+)NCBI
UU_Cfam_GSD_1.0278,902,815 - 8,988,437 (-)NCBI
DPPA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,743,045 - 7,751,285 (+)NCBI
Vero_WHO_p1.0NW_023666063450,101 - 455,796 (-)NCBI
Dppa3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248604,974,941 - 4,978,295 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021093127   ⟹   XP_020948786
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1562,861,492 - 62,868,131 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020948786 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020948786   ⟸   XM_021093127
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene DPPA3 ENTREZGENE