COLQ (collagen like tail subunit of asymmetric acetylcholinesterase) - Rat Genome Database

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Gene: COLQ (collagen like tail subunit of asymmetric acetylcholinesterase) Sus scrofa
Analyze
Symbol: COLQ
Name: collagen like tail subunit of asymmetric acetylcholinesterase
RGD ID: 14269810
Description: ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN establishment of protein localization to membrane (ortholog); regulation of synaptic assembly at neuromuscular junction (ortholog); skeletal muscle acetylcholine-gated channel clustering (ortholog); ASSOCIATED WITH 3p deletion syndrome (ortholog); biotinidase deficiency (ortholog); congenital myasthenic syndrome (ortholog); FOUND IN cell junction (inferred); collagen-containing extracellular matrix (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acetylcholinesterase collagenic tail peptide
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,677,740 - 2,755,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,677,738 - 2,755,635 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,604,003 - 2,681,981 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
COLQ
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,677,740 - 2,755,307 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,677,738 - 2,755,635 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2132,604,003 - 2,681,981 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COLQ
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38315,450,133 - 15,521,706 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl315,450,133 - 15,521,751 (-)EnsemblGRCh38hg38GRCh38
GRCh37315,491,640 - 15,563,213 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36315,466,644 - 15,538,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 34315,466,644 - 15,538,262NCBI
Celera315,429,870 - 15,501,486 (-)NCBICelera
Cytogenetic Map3p25.1NCBI
HuRef315,426,974 - 15,498,632 (-)NCBIHuRef
CHM1_1315,442,518 - 15,514,124 (-)NCBICHM1_1
T2T-CHM13v2.0315,452,540 - 15,524,108 (-)NCBIT2T-CHM13v2.0
Colq
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391431,245,039 - 31,299,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1431,245,039 - 31,313,300 (-)EnsemblGRCm39 Ensembl
GRCm381431,523,082 - 31,577,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,523,082 - 31,591,343 (-)EnsemblGRCm38mm10GRCm38
MGSCv371432,336,270 - 32,390,569 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361430,352,091 - 30,406,392 (-)NCBIMGSCv36mm8
Celera1427,782,091 - 27,835,024 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.18NCBI
Colq
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8166,738,251 - 6,830,492 (-)NCBIGRCr8
mRatBN7.2166,731,850 - 6,824,973 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,731,858 - 6,787,107 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx166,744,228 - 6,799,552 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0167,889,123 - 7,944,453 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0166,751,954 - 6,807,065 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0167,626,380 - 7,681,621 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl167,627,603 - 7,681,576 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0167,553,135 - 7,608,336 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4166,975,587 - 7,035,001 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1166,975,584 - 7,034,999 (-)NCBI
Celera168,403,494 - 8,458,629 (+)NCBICelera
Cytogenetic Map16p16NCBI
Colq
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554301,956,375 - 2,019,598 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554301,956,833 - 2,019,581 (-)NCBIChiLan1.0ChiLan1.0
COLQ
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2215,430,081 - 15,506,898 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1315,434,653 - 15,511,662 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0315,373,589 - 15,447,613 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1315,712,630 - 15,784,299 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl315,712,630 - 15,784,299 (-)Ensemblpanpan1.1panPan2
Colq
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118169,757,170 - 169,802,383 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364732,877,568 - 2,939,840 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364732,877,543 - 2,941,374 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COLQ
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11560,284,557 - 60,395,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604133,316,392 - 33,386,225 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Colq
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248225,163,506 - 5,222,134 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248225,162,989 - 5,222,140 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in COLQ
4076 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system
High
Medium 2
Low 3 2 1 2 7 2 1
Below cutoff 2 1 1 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000024153   ⟹   ENSSSCP00000019692
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl132,677,740 - 2,755,307 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000075114   ⟹   ENSSSCP00000073966
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl132,677,740 - 2,734,480 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083924   ⟹   ENSSSCP00000067124
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl132,677,740 - 2,755,307 (-)Ensembl
RefSeq Acc Id: XM_021071338   ⟹   XP_020926997
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1132,677,738 - 2,755,635 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020926997   ⟸   XM_021071338
- UniProtKB: A0A8D0JZV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000067124   ⟸   ENSSSCT00000083924
RefSeq Acc Id: ENSSSCP00000073966   ⟸   ENSSSCT00000075114
RefSeq Acc Id: ENSSSCP00000019692   ⟸   ENSSSCT00000024153


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028911 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005036251 UniProtKB/TrEMBL
  ENSSSCG00015016070 UniProtKB/TrEMBL
  ENSSSCG00025026244 UniProtKB/TrEMBL
  ENSSSCG00030002026 UniProtKB/TrEMBL
  ENSSSCG00035078332 UniProtKB/TrEMBL
  ENSSSCG00040016283 UniProtKB/TrEMBL
  ENSSSCG00045011945 UniProtKB/TrEMBL
  ENSSSCG00050067661 UniProtKB/TrEMBL
  ENSSSCG00055021094 UniProtKB/TrEMBL
  ENSSSCG00060070040 UniProtKB/TrEMBL
  ENSSSCG00065074388 UniProtKB/TrEMBL
  ENSSSCG00070019827 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000024153 ENTREZGENE
  ENSSSCT00000024153.4 UniProtKB/TrEMBL
  ENSSSCT00000075114.2 UniProtKB/TrEMBL
  ENSSSCT00000083924.2 UniProtKB/TrEMBL
  ENSSSCT00005059163.1 UniProtKB/TrEMBL
  ENSSSCT00015021316.1 UniProtKB/TrEMBL
  ENSSSCT00015021461.1 UniProtKB/TrEMBL
  ENSSSCT00015021495.1 UniProtKB/TrEMBL
  ENSSSCT00025035537.1 UniProtKB/TrEMBL
  ENSSSCT00025035916.1 UniProtKB/TrEMBL
  ENSSSCT00030002694.1 UniProtKB/TrEMBL
  ENSSSCT00030002741.1 UniProtKB/TrEMBL
  ENSSSCT00035106915.1 UniProtKB/TrEMBL
  ENSSSCT00040022031.1 UniProtKB/TrEMBL
  ENSSSCT00040022081.1 UniProtKB/TrEMBL
  ENSSSCT00045020389.1 UniProtKB/TrEMBL
  ENSSSCT00045020504.1 UniProtKB/TrEMBL
  ENSSSCT00050092337.1 UniProtKB/TrEMBL
  ENSSSCT00050092384.1 UniProtKB/TrEMBL
  ENSSSCT00055041807.1 UniProtKB/TrEMBL
  ENSSSCT00055042136.1 UniProtKB/TrEMBL
  ENSSSCT00060095710.1 UniProtKB/TrEMBL
  ENSSSCT00060095782.1 UniProtKB/TrEMBL
  ENSSSCT00065102459.1 UniProtKB/TrEMBL
  ENSSSCT00065102489.1 UniProtKB/TrEMBL
  ENSSSCT00070039340.1 UniProtKB/TrEMBL
  ENSSSCT00070039360.1 UniProtKB/TrEMBL
  ENSSSCT00070039377.1 UniProtKB/TrEMBL
  ENSSSCT00070039381.1 UniProtKB/TrEMBL
InterPro Collagen UniProtKB/TrEMBL
  Myxo_disulph_rpt UniProtKB/TrEMBL
NCBI Gene COLQ ENTREZGENE
PANTHER ACETYLCHOLINESTERASE COLLAGENIC TAIL PEPTIDE UniProtKB/TrEMBL
  COLLAGEN ALPHA UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
UniProt A0A4X1USG6_PIG UniProtKB/TrEMBL
  A0A4X1USI6_PIG UniProtKB/TrEMBL
  A0A4X1USJ6_PIG UniProtKB/TrEMBL
  A0A4X1UW73_PIG UniProtKB/TrEMBL
  A0A5G2QQV9_PIG UniProtKB/TrEMBL
  A0A5G2RC69_PIG UniProtKB/TrEMBL
  A0A8D0JZV3 ENTREZGENE, UniProtKB/TrEMBL
  I3L6P0_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86884 ENTREZGENE