CGGBP1 (CGG triplet repeat binding protein 1) - Rat Genome Database

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Gene: CGGBP1 (CGG triplet repeat binding protein 1) Sus scrofa
Analyze
Symbol: CGGBP1
Name: CGG triplet repeat binding protein 1
RGD ID: 14268147
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (inferred); double-stranded DNA binding (inferred); identical protein binding (inferred); INVOLVED IN epigenetic regulation of gene expression (inferred); negative regulation of transcription by RNA polymerase II (inferred); regulation of gene expression (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CGG triplet repeat-binding protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13167,896,037 - 167,902,932 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113167,895,973 - 167,902,672 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
CGGBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13167,896,037 - 167,902,932 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113167,895,973 - 167,902,672 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CGGBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38388,051,950 - 88,149,870 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl388,051,944 - 88,149,885 (-)EnsemblGRCh38hg38GRCh38
GRCh37388,101,100 - 88,199,020 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36388,183,790 - 88,190,836 (-)NCBINCBI36Build 36hg18NCBI36
Build 34388,183,790 - 88,190,836NCBI
Celera388,855,191 - 88,862,231 (-)NCBICelera
Cytogenetic Map3p11.1NCBI
HuRef388,114,832 - 88,212,523 (-)NCBIHuRef
CHM1_1388,054,221 - 88,152,134 (-)NCBICHM1_1
T2T-CHM13v2.0388,127,798 - 88,225,703 (-)NCBIT2T-CHM13v2.0
Cggbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391664,672,364 - 64,679,854 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1664,672,359 - 64,679,870 (+)EnsemblGRCm39 Ensembl
GRCm381664,852,001 - 64,859,491 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1664,851,996 - 64,859,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv371664,851,911 - 64,859,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361664,794,287 - 64,801,693 (+)NCBIMGSCv36mm8
Celera1665,146,563 - 65,153,921 (+)NCBICelera
Cytogenetic Map16C1.3NCBI
cM Map1637.1NCBI
Cggbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81116,012,251 - 16,019,388 (+)NCBIGRCr8
mRatBN7.2112,565,629 - 2,572,869 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,565,484 - 2,573,031 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1111,161,781 - 11,168,914 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0113,954,834 - 3,961,967 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0113,059,866 - 3,066,999 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0111,896,166 - 1,915,603 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl111,896,209 - 1,915,587 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0111,876,785 - 1,893,698 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4112,182,858 - 2,190,461 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1112,182,888 - 2,187,112 (+)NCBI
Celera112,548,043 - 2,555,104 (+)NCBICelera
Cytogenetic Map11p12NCBI
Cggbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554075,434,954 - 5,443,713 (+)NCBIChiLan1.0ChiLan1.0
LOC100974639
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2288,209,315 - 88,216,363 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1388,214,220 - 88,221,166 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0388,190,366 - 88,197,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1390,301,865 - 90,400,416 (-)NCBIpanpan1.1PanPan1.1panPan2
CGGBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.131207,383 - 214,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl31210,547 - 211,050 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha31250,507 - 257,539 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.031190,831 - 197,873 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl31190,836 - 195,933 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.131170,542 - 177,568 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.031217,820 - 224,830 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.031522,514 - 529,544 (+)NCBIUU_Cfam_GSD_1.0
Cggbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049711,683,228 - 1,690,399 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366101,683,259 - 1,686,936 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366101,683,315 - 1,690,402 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CGGBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12288,774,978 - 88,871,528 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2288,867,675 - 88,868,175 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604177,842,864 - 77,937,728 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cggbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247894,444,979 - 4,448,135 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247894,443,540 - 4,448,702 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CGGBP1
32 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000037851   ⟹   ENSSSCP00000046502
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13167,895,997 - 167,902,937 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000079531   ⟹   ENSSSCP00000070637
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13167,896,037 - 167,902,932 (+)Ensembl
RefSeq Acc Id: XM_021070750   ⟹   XP_020926409
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113167,895,973 - 167,902,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070751   ⟹   XP_020926410
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113167,895,998 - 167,902,672 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021070752   ⟹   XP_020926411
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113167,896,197 - 167,902,672 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020926409   ⟸   XM_021070750
- UniProtKB: A0A287ARL7 (UniProtKB/TrEMBL),   A0A4X1UNF6 (UniProtKB/TrEMBL),   A0A8D0UD64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926410   ⟸   XM_021070751
- UniProtKB: A0A287ARL7 (UniProtKB/TrEMBL),   A0A4X1UNF6 (UniProtKB/TrEMBL),   A0A8D0UD64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020926411   ⟸   XM_021070752
- UniProtKB: A0A287ARL7 (UniProtKB/TrEMBL),   A0A4X1UNF6 (UniProtKB/TrEMBL),   A0A8D0UD64 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000070637   ⟸   ENSSSCT00000079531
RefSeq Acc Id: ENSSSCP00000046502   ⟸   ENSSSCT00000037851


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000032182 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005014747 UniProtKB/TrEMBL
  ENSSSCG00015075973 UniProtKB/TrEMBL
  ENSSSCG00025016416 UniProtKB/TrEMBL
  ENSSSCG00030043444 UniProtKB/TrEMBL
  ENSSSCG00035018291 UniProtKB/TrEMBL
  ENSSSCG00040002794 UniProtKB/TrEMBL
  ENSSSCG00045035503 UniProtKB/TrEMBL
  ENSSSCG00050046976 UniProtKB/TrEMBL
  ENSSSCG00055011029 UniProtKB/TrEMBL
  ENSSSCG00060025752 UniProtKB/TrEMBL
  ENSSSCG00065027723 UniProtKB/TrEMBL
  ENSSSCG00070018218 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000079531 ENTREZGENE
  ENSSSCT00000079531.2 UniProtKB/TrEMBL
  ENSSSCT00005023021.1 UniProtKB/TrEMBL
  ENSSSCT00005023048.1 UniProtKB/TrEMBL
  ENSSSCT00015102357.1 UniProtKB/TrEMBL
  ENSSSCT00015102382.1 UniProtKB/TrEMBL
  ENSSSCT00025022064.1 UniProtKB/TrEMBL
  ENSSSCT00025022068.1 UniProtKB/TrEMBL
  ENSSSCT00030060588.1 UniProtKB/TrEMBL
  ENSSSCT00030060607.1 UniProtKB/TrEMBL
  ENSSSCT00035023609.1 UniProtKB/TrEMBL
  ENSSSCT00035023612.1 UniProtKB/TrEMBL
  ENSSSCT00040003444.1 UniProtKB/TrEMBL
  ENSSSCT00040003455.1 UniProtKB/TrEMBL
  ENSSSCT00045060957.1 UniProtKB/TrEMBL
  ENSSSCT00045060988.1 UniProtKB/TrEMBL
  ENSSSCT00050063955.1 UniProtKB/TrEMBL
  ENSSSCT00050063959.1 UniProtKB/TrEMBL
  ENSSSCT00055021626.1 UniProtKB/TrEMBL
  ENSSSCT00055021641.1 UniProtKB/TrEMBL
  ENSSSCT00060034897.1 UniProtKB/TrEMBL
  ENSSSCT00060034898.1 UniProtKB/TrEMBL
  ENSSSCT00065037349.1 UniProtKB/TrEMBL
  ENSSSCT00065037350.1 UniProtKB/TrEMBL
  ENSSSCT00070035937.1 UniProtKB/TrEMBL
InterPro Cggbp1 UniProtKB/TrEMBL
NCBI Gene CGGBP1 ENTREZGENE
PANTHER PTHR32344 UniProtKB/TrEMBL
  U1-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
UniProt A0A287ARL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UNF6 ENTREZGENE
  A0A8D0UD64 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1UNF6 UniProtKB/TrEMBL
VGNC ID VGNC:86615 ENTREZGENE