CPNE9 (copine family member 9) - Rat Genome Database

Name: CPNE9
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CPNE9 (copine family member 9) Sus scrofa

Analyze

Symbol:

CPNE9

Name:

copine family member 9

RGD ID:

14267975

Description:

ENCODES a protein that exhibits calcium-dependent phospholipid binding (inferred); phosphatidylinositol-3-phosphate phosphatase activity (inferred); INVOLVED IN cellular response to calcium ion (inferred); positive regulation of dendrite extension (inferred); ASSOCIATED WITH Atrioventricular Septal Defect 2 (ortholog); genetic disease (ortholog); long QT syndrome (ortholog); FOUND IN plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

copine-9

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CPNE9 (copine family member 9)	HGNC	NCBI
Mus musculus (house mouse):	Cpne9 (copine family member IX)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cpne9 (copine family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cpne9 (copine family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CPNE9 (copine family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CPNE9 (copine family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cpne9 (copine family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CPNE9 (copine family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cpne9 (copine family member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	65,995,534 - 66,019,077 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	65,994,369 - 66,019,080 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	73,128,376 - 73,156,320 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Atrioventricular Septal Defect 2 (ISO)

genetic disease (ISO)

long QT syndrome (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to calcium ion (IEA)

positive regulation of dendrite extension (IEA)

Cellular Component

plasma membrane (IEA)

Molecular Function

calcium-dependent phospholipid binding (IEA)

phosphatidylinositol-3-phosphate phosphatase activity (IBA,IEA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

CPNE9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	65,995,534 - 66,019,077 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	65,994,369 - 66,019,080 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	73,128,376 - 73,156,320 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CPNE9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	9,703,833 - 9,729,908 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	9,703,826 - 9,729,908 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	9,745,517 - 9,771,592 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	9,720,510 - 9,746,592 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	9,680,220 - 9,706,296 (+)	NCBI		Celera
Cytogenetic Map	3	p25.3	NCBI
HuRef	3	9,681,870 - 9,707,942 (+)	NCBI		HuRef
CHM1_1	3	9,695,714 - 9,721,793 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	9,695,788 - 9,721,866 (+)	NCBI		T2T-CHM13v2.0

Cpne9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	113,259,244 - 113,282,532 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	113,259,268 - 113,282,588 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	113,282,283 - 113,305,571 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	113,282,307 - 113,305,627 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	113,232,301 - 113,255,565 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	113,248,084 - 113,271,348 (+)	NCBI		MGSCv36	mm8
Celera	6	115,109,272 - 115,132,547 (+)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	52.75	NCBI

Cpne9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	147,985,900 - 148,009,987 (+)	NCBI		GRCr8
mRatBN7.2	4	146,429,961 - 146,454,335 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	146,430,792 - 146,454,333 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	151,815,088 - 151,838,544 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	147,595,928 - 147,619,388 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	146,217,490 - 146,240,929 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	145,238,011 - 145,262,444 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	145,238,947 - 145,262,442 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	208,536,038 - 208,559,594 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	149,165,857 - 149,189,090 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	149,410,697 - 149,433,929 (+)	NCBI
Celera	4	134,988,163 - 135,011,651 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

Cpne9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955561	1,238,862 - 1,258,045 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955561	1,238,916 - 1,258,000 (+)	NCBI	ChiLan1.0	ChiLan1.0

CPNE9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	9,714,731 - 9,741,790 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	9,719,444 - 9,746,548 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	9,655,280 - 9,682,266 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	9,893,478 - 9,920,944 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	9,893,662 - 9,920,728 (+)	Ensembl	panpan1.1		panPan2

CPNE9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	8,511,267 - 8,529,630 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	8,511,350 - 8,529,473 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	8,544,337 - 8,562,825 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	8,540,563 - 8,559,022 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	8,540,564 - 8,558,946 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	8,263,025 - 8,281,488 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	8,607,545 - 8,625,890 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	8,581,186 - 8,599,646 (-)	NCBI		UU_Cfam_GSD_1.0

Cpne9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	15,446,795 - 15,470,540 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936602	3,438,888 - 3,463,510 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936602	3,439,172 - 3,462,951 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CPNE9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	45,714,168 - 45,738,368 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	120,831,004 - 120,857,147 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cpne9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	4,342,172 - 4,362,931 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624731	4,341,091 - 4,363,112 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CPNE9
340 total Variants

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021069294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021069295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021069296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021069297	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021069298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021069299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021069300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK349425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU633376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU633418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01044623	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000012637 ⟹ ENSSSCP00000012305

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,995,657 - 66,019,077 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000037009 ⟹ ENSSSCP00000051910

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,995,657 - 66,016,290 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000040278 ⟹ ENSSSCP00000056419

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,995,534 - 66,019,076 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000044434 ⟹ ENSSSCP00000046503

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,948,567 - 65,994,820 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000045385 ⟹ ENSSSCP00000053798

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,948,671 - 65,994,225 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000049813 ⟹ ENSSSCP00000053604

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,948,597 - 65,994,820 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000051621 ⟹ ENSSSCP00000056395

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,948,544 - 65,994,225 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000054604 ⟹ ENSSSCP00000042922

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,948,556 - 65,994,227 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000061346 ⟹ ENSSSCP00000052071

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	65,948,565 - 65,994,226 (+)	Ensembl

RefSeq Acc Id:

XM_021069294 ⟹ XP_020924953

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	65,994,369 - 66,019,080 (+)	NCBI

Sequence:

show sequence

ATCATCATTTGACTGCTTTCTTTGTGGAGTTATTTGGAAAGTTCTCACTGTCCCTTGTTTGTGC
TGGAAGAAGGGGTTTTTATGGGGATGGGGCAGATGAGGCAGGAAGAAAACTGGAGACTTGAGTG
TGCCTCTTAATTTCGGAGCCATGAGAGCCTCTGGTGATATGGGGACATGTAGTCACAAGTTGTT
AAGGTGGGAGCAGTGGTCCTCAGACCTGAGGGCTTTAGTCCCCTAGGAAGCCTGTTTATCCATT
GCAGATTTCAGGGGTGCCTGAAATTGCAACTTGAAGATGCTCAGATTTTCATTAACTGAGAAAT
GCATGGGGGAATCCATTTTTAACATATTCAGCAGACAGCCTGCTCCTGATACAGGTGACCTACA
GCCCCTGCCTGTGATGAGCACTGGCTTCCAGGGTTGTGGAGGCAGTAGGCAATGTGGGGAGGAT
GGGCCTGGCTGATCATCACCTTCATGTACACTGTGACCTAGAATGGGTTGCATCGTCGCAGTGT
ATCTCTGACTTCTACCATGAAGTCCTGAGGGCTCAAAGACATGGGCAGAGGGCTTTGCACAGTT
CTGTAACAGGCACCATTTACTGACTTCTCACTAAACACAGATGAGGTCATGAGTGCAAGTGCCC
AGAGGAAGGAAATAGCAGTGAACATTTTCTTGAGTGTTCACTGTGTACAATCCCTTGTGCTAAG
TCCTTTCTGTGGATTATCCTGATAAAATTGTACAGCACCCCAGTAGGAGCTATTATGGCCTTTC
TACCAATGAAGTGACTGAGCCACAGAGATGTGCAGTAACTTGCCCAAGGTAACACAGCTAATAA
CAGATGTGTAGTTCTTCCTATTCAGAGACTGAAGGAGGGTGGAAGGAGGAAGGGGGAGAAGATT
GTTGAGGGAGCGACTAAGGGAGAAGAGTCCTCCCCAATGCCTCCCAGACACCCCAACCCTTCAG
CACCGCGGACAGCTACTGTGGGGGTGGGTGGGCTGGGTTTCACCCAGAGGAAAAGGGCTGGGAG
GGCTCTCCTACCTTGGGGATTGAAGTTGGATTTGTGTATGGTTCCTGGCCAGCTTGAGACTGCT
CCAATGGGGCGGGGGCCACCCGCAGGGCCGGGCGGGGCTGTGTTGCCATCTGGAGCCGCAGCGC
CAGCGGCCACAGTGAAGGCGCGAGCAGTGAGAGCGCACGCAGGACTAGAGGGAGTACAGCCGCC
ACCACCGCGGCACATGGGCCGACTCTGCCGCTGCCGCCTCCCCTAGCAGCCCCGGTGTCCCCAA
TCTTGCAGCCTCCCGCAGCTTCGGCCACCCGACCAGCCATGTCTCTCAGCGGAGCTTCTGAGCG
CAGCGTCCCGGCCACCAAGATTGAAATTACCGTATCCTGCCGGAACCTGCTGGACCTCGACACC
TTCTCCAAGTCCGACCCCATGGTGGTGCTGTACACGCAGAGCCGGGCCAGCCAGGAGTGGCGGG
AGTTCGGACGGACCGAGGTGATCGATAACACGCTGAATCCAGACTTTGTGCGCAAATTCGTCCT
TGACTATTTCTTTGAGGAAAAGCAAAACCTGCGCTTCGATGTGTACAATGTCGACTCCAAAACG
AACATCTCCAAACCGGTGAGTGACTGTCCCCTCACAGGCTGGCCGGGCACAAAGGCAGCACTCA
GTGTGTTAAATGACCTTCCTCAGAACCCTCCTACCCCTCAAACCCACCCTCCCTGCTTTCCTCA
TCTGTTCCTGCCTCAGTTTCCCTTCTGTGCCTCTTTCTCACTGCTCTTCTTCCTTTTCGACTGC
CGCTGGGACCCTCAGAAGGATTTCCTGGGACAAGCGTTCCTGGCCCTGGGAGAGGTGATCGGAG
GCCAGGGCAGCCGCGTAGAGCGACCCCTCACGGGTGTACCAGGCAAGAAGTGTGGGACCATATT
GCTGACTGCAGAGGAGCTTAGCAATTGCCGGGATATTGCCACCATGCAGCTTTGTGCAAACAAG
CTGGACAAGAAGGACTTCTTTGGGAAATCAGACCCCTTCCTTGTGTTCTACAGGAGCAATGAGG
ATGGCACGTTTACCATCTGCCACAAGACAGAAGTTGTGAAAAACACGCTGAATCCTGTGTGGCA
GCCCTTTAGCATCCCTGTGCGGGCATTATGCAATGGAGACTACGACAGAACAGTGAAAATTGAC
GTGTACGACTGGGACCGGGATGGAAGCCACGACTTCATCGGTGAGTTCACAACCAGCTACAGAG
AGCTGAGCAAGGCCCAGAACCAGTTCACAGTGTATGAGGTACTTAACCCTCGGAAGAAATGTAA
GAAAAAGAAATATGTCAACTCGGGAACTGTGACGCTGCTTTCCTTCTCTGTGGACTCTGAATTC
ACTTTTGTCGATTACATCAAGGGAGGGACACAACTGAACTTCACAGTAGCCATTGATTTCACAG
CTTCCAATGGGAATCCCCTGCAGCCCACCTCCCTGCACTACATGAGTCCCTATCAGCTCAGCGC
CTATGCCATGGCCCTCAAGGCAGTGGGAGAAATCATCCAGGACTATGACAGTGATAAACTCTTC
CCAGCCTACGGCTTTGGGGCCAAGCTGCCTCCTGAGGGACGGATCTCCCATCAGTTCCCCCTGA
ACAACAATGACGAAGACCCCAACTGTGCGGGCATTGAGGGCGTGCTAGAGAGCTACTTCCAGAG
CCTGCGCACAGTGCAGCTCTACGGGCCCACCTACTTCGCTCCTGTCATCAACCAGGTGGCCAGG
GCTGCAGCCAAGATCTCTGATGGTTCCCAGTACTATGTTCTGCTCATCATCACGGATGGGGTCA
TCTCTGACATGACACAGACCAAAGAGGCCATTGTCAGTGCCTCCTCCCTGCCCATGTCTATTAT
TATTGTTGGTGTGGGACCAGCCATGTTTGAGGCAATGGAAGAGTTGGATGGCGATGACGTGCGC
GTGTCCTCTAGGGGACGATATGCAGAGCGGGACATCGTTCAGTTCGTCCCATTCCGAGACTATG
TCGACCGGTCAGGGAACCAGGTGCTAAGCATGGCCCGACTAGCCAAGGATGTGCTGGCTGAGAT
CCCGGAGCAGCTACTGTCCTATATGCGCACCAGGGACATCCAGCCTCGCCCTCCACCACCTGCC
AACCCCAGCCCAACGCCAGCTCCAGAGCAGCCCTGAGATCGCAACTATCCATTGCCTAGCAGTC
TGCCGCCTGCCCACCTACTGCTTCTGCTGAAACCCAGAGGCACCTGGAACCCTGGACGTCACTG
GAGGCCAACTTGGAGGATTGGAGCTGGCTGATCAAGCCCTCTGCTCCCTCATCCAGAAGGGCCT
AGCACTATCACCACCTCCCTGCCTTCATGCCAGTAATAAAGCTGATCTTTACTCCA

hide sequence

RefSeq Acc Id:

XM_021069295 ⟹ XP_020924954

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	65,994,369 - 66,019,080 (+)	NCBI

Sequence:

show sequence

ATCATCATTTGACTGCTTTCTTTGTGGAGTTATTTGGAAAGTTCTCACTGTCCCTTGTTTGTGC
TGGAAGAAGGGGTTTTTATGGGGATGGGGCAGATGAGGCAGGAAGAAAACTGGAGACTTGAGTG
TGCCTCTTAATTTCGGAGCCATGAGAGCCTCTGGTGATATGGGGACATGTAGTCACAAGTTGTT
AAGGTGGGAGCAGTGGTCCTCAGACCTGAGGGCTTTAGTCCCCTAGGAAGCCTGTTTATCCATT
GCAGATTTCAGGGGTGCCTGAAATTGCAACTTGAAGATGCTCAGATTTTCATTAACTGAGAAAT
GCATGGGGGAATCCATTTTTAACATATTCAGCAGACAGCCTGCTCCTGATACAGGTGACCTACA
GCCCCTGCCTGTGATGAGCACTGGCTTCCAGGGTTGTGGAGGCAGTAGGCAATGTGGGGAGGAT
GGGCCTGGCTGATCATCACCTTCATGTACACTGTGACCTAGAATGGGTTGCATCGTCGCAGTGT
ATCTCTGACTTCTACCATGAAGTCCTGAGGGCTCAAAGACATGGGCAGAGGGCTTTGCACAGTT
CTGTAACAGGCACCATTTACTGACTTCTCACTAAACACAGATGAGGTCATGAGTGCAAGTGCCC
AGAGGAAGGAAATAGCAGTGAACATTTTCTTGAGTGTTCACTGTGTACAATCCCTTGTGCTAAG
TCCTTTCTGTGGATTATCCTGATAAAATTGTACAGCACCCCAGTAGGAGCTATTATGGCCTTTC
TACCAATGAAGTGACTGAGCCACAGAGATGTGCAGTAACTTGCCCAAGGTAACACAGCTAATAA
CAGATGTGTAGTTCTTCCTATTCAGAGACTGAAGGAGGGTGGAAGGAGGAAGGGGGAGAAGATT
GTTGAGGGAGCGACTAAGGGAGAAGAGTCCTCCCCAATGCCTCCCAGACACCCCAACCCTTCAG
CACCGCGGACAGCTACTGTGGGGGTGGGTGGGCTGGGTTTCACCCAGAGGAAAAGGGCTGGGAG
GGCTCTCCTACCTTGGGGATTGAAGTTGGATTTGTGTATGGTTCCTGGCCAGCTTGAGACTGCT
CCAATGGGGCGGGGGCCACCCGCAGGGCCGGGCGGGGCTGTGTTGCCATCTGGAGCCGCAGCGC
CAGCGGCCACAGTGAAGGCGCGAGCAGTGAGAGCGCACGCAGGACTAGAGGGAGTACAGCCGCC
ACCACCGCGGCACATGGGCCGACTCTGCCGCTGCCGCCTCCCCTAGCAGCCCCGGTGTCCCCAA
TCTTGCAGCCTCCCGCAGCTTCGGCCACCCGACCAGCCATGTCTCTCAGCGGAGCTTCTGAGCG
CAGCGTCCCGGCCACCAAGATTGAAATTACCGTATCCTGCCGGAACCTGCTGGACCTCGACACC
TTCTCCAAGTCCGACCCCATGGTGGTGCTGTACACGCAGAGCCGGGCCAGCCAGGAGTGGCGGG
AGTTCGGACGGACCGAGGTGATCGATAACACGCTGAATCCAGACTTTGTGCGCAAATTCGTCCT
TGACTATTTCTTTGAGGAAAAGCAAAACCTGCGCTTCGATGTGTACAATGTCGACTCCAAAACG
AACATCTCCAAACCGAAGGATTTCCTGGGACAAGCGTTCCTGGCCCTGGGAGAGGTGATCGGAG
GCCAGGGCAGCCGCGTAGAGCGACCCCTCACGGGTGTACCAGGCAAGAAGTGTGGGACCATATT
GCTGACTGCAGAGGAGCTTAGCAATTGCCGGGATATTGCCACCATGCAGCTTTGTGCAAACAAG
CTGGACAAGAAGGACTTCTTTGGGAAATCAGACCCCTTCCTTGTGTTCTACAGGAGCAATGAGG
ATGGCACGTTTACCATCTGCCACAAGACAGAAGTTGTGAAAAACACGCTGAATCCTGTGTGGCA
GCCCTTTAGCATCCCTGTGCGGGCATTATGCAATGGAGACTACGACAGAACAGTGAAAATTGAC
GTGTACGACTGGGACCGGGATGGAAGCCACGACTTCATCGGTGAGTTCACAACCAGCTACAGAG
AGCTGAGCAAGGCCCAGAACCAGTTCACAGTGTATGAGGTACTTAACCCTCGGAAGAAATGTAA
GAAAAAGAAATATGTCAACTCGGGAACTGTGACGCTGCTTTCCTTCTCTGTGGACTCTGAATTC
ACTTTTGTCGATTACATCAAGGGAGGGACACAACTGAACTTCACAGTAGCCATTGATTTCACAG
CTTCCAATGGGAATCCCCTGCAGCCCACCTCCCTGCACTACATGAGTCCCTATCAGCTCAGCGC
CTATGCCATGGCCCTCAAGGCAGTGGGAGAAATCATCCAGGACTATGACAGTGATAAACTCTTC
CCAGCCTACGGCTTTGGGGCCAAGCTGCCTCCTGAGGGACGGATCTCCCATCAGTTCCCCCTGA
ACAACAATGACGAAGACCCCAACTGTGCGGGCATTGAGGGCGTGCTAGAGAGCTACTTCCAGAG
CCTGCGCACAGTGCAGCTCTACGGGCCCACCTACTTCGCTCCTGTCATCAACCAGGTGGCCAGG
GCTGCAGCCAAGATCTCTGATGGTTCCCAGTACTATGTTCTGCTCATCATCACGGATGGGGTCA
TCTCTGACATGACACAGACCAAAGAGGCCATTGTCAGTGCCTCCTCCCTGCCCATGTCTATTAT
TATTGTTGGTGTGGGACCAGCCATGTTTGAGGCAATGGAAGAGTTGGATGGCGATGACGTGCGC
GTGTCCTCTAGGGGACGATATGCAGAGCGGGACATCGTTCAGTTCGTCCCATTCCGAGACTATG
TCGACCGGTCAGGGAACCAGGTGCTAAGCATGGCCCGACTAGCCAAGGATGTGCTGGCTGAGAT
CCCGGAGCAGCTACTGTCCTATATGCGCACCAGGGACATCCAGCCTCGCCCTCCACCACCTGCC
AACCCCAGCCCAACGCCAGCTCCAGAGCAGCCCTGAGATCGCAACTATCCATTGCCTAGCAGTC
TGCCGCCTGCCCACCTACTGCTTCTGCTGAAACCCAGAGGCACCTGGAACCCTGGACGTCACTG
GAGGCCAACTTGGAGGATTGGAGCTGGCTGATCAAGCCCTCTGCTCCCTCATCCAGAAGGGCCT
AGCACTATCACCACCTCCCTGCCTTCATGCCAGTAATAAAGCTGATCTTTACTCCA

hide sequence

RefSeq Acc Id:

XM_021069296 ⟹ XP_020924955

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	65,994,369 - 66,019,080 (+)	NCBI

Sequence:

show sequence

ATCATCATTTGACTGCTTTCTTTGTGGAGTTATTTGGAAAGTTCTCACTGTCCCTTGTTTGTGC
TGGAAGAAGGGGTTTTTATGGGGATGGGGCAGATGAGGCAGGAAGAAAACTGGAGACTTGAGTG
TGCCTCTTAATTTCGGAGCCATGAGAGCCTCTGGTGATATGGGGACATGTAGTCACAAGTTGTT
AAGGTGGGAGCAGTGGTCCTCAGACCTGAGGGCTTTAGTCCCCTAGGAAGCCTGTTTATCCATT
GCAGATTTCAGGGGTGCCTGAAATTGCAACTTGAAGATGCTCAGATTTTCATTAACTGAGAAAT
GCATGGGGGAATCCATTTTTAACATATTCAGCAGACAGCCTGCTCCTGATACAGGTGACCTACA
GCCCCTGCCTGTGATGAGCACTGGCTTCCAGGGTTGTGGAGGCAGTAGGCAATGTGGGGAGGAT
GGGCCTGGCTGATCATCACCTTCATGTACACTGTGACCTAGAATGGGTTGCATCGTCGCAGTGT
ATCTCTGACTTCTACCATGAAGTCCTGAGGGCTCAAAGACATGGGCAGAGGGCTTTGCACAGTT
CTGTAACAGGCACCATTTACTGACTTCTCACTAAACACAGATGAGGTCATGAGTGCAAGTGCCC
AGAGGAAGGAAATAGCAGTGAACATTTTCTTGAGTGTTCACTGTGTACAATCCCTTGTGCTAAG
TCCTTTCTGTGGATTATCCTGATAAAATTGTACAGCACCCCAGTAGGAGCTATTATGGCCTTTC
TACCAATGAAGTGACTGAGCCACAGAGATGTGCAGTAACTTGCCCAAGGTAACACAGCTAATAA
CAGATGTGTAGTTCTTCCTATTCAGAGACTGAAGGAGGGTGGAAGGAGGAAGGGGGAGAAGATT
GTTGAGGGAGCGACTAAGGGAGAAGAGTCCTCCCCAATGCCTCCCAGACACCCCAACCCTTCAG
CACCGCGGACAGCTACTGTGGGGGTGGGTGGGCTGGGTTTCACCCAGAGGAAAAGGGCTGGGAG
GGCTCTCCTACCTTGGGGATTGAAGTTGGATTTGTGTATGGTTCCTGGCCAGCTTGAGACTGCT
CCAATGGGGCGGGGGCCACCCGCAGGGCCGGGCGGGGCTGTGTTGCCATCTGGAGCCGCAGCGC
CAGCGGCCACAGTGAAGGCGCGAGCAGTGAGAGCGCACGCAGGACTAGAGGGAGTACAGCCGCC
ACCACCGCGGCACATGGGCCGACTCTGCCGCTGCCGCCTCCCCTAGCAGCCCCGGTGTCCCCAA
TCTTGCAGCCTCCCGCAGCTTCGGCCACCCGACCAGCCATGTCTCTCAGCGGAGCTTCTGAGCG
CAGCGTCCCGGCCACCAAGATTGAAATTACCGTATCCTGCCGGAACCTGCTGGACCTCGACACC
TTCTCCAAGTCCGACCCCATGGTGGTGCTGTACACGCAGAGCCGGGCCAGCCAGGAGTGGCGGG
AGTTCGGACGGACCGAGGTGATCGATAACACGCTGAATCCAGACTTTGTGCGCAAATTCGTCCT
TGACTATTTCTTTGAGGAAAAGCAAAACCTGCGCTTCGATGTGTACAATGTCGACTCCAAAACG
AACATCTCCAAACCGGATTTCCTGGGACAAGCGTTCCTGGCCCTGGGAGAGGTGATCGGAGGCC
AGGGCAGCCGCGTAGAGCGACCCCTCACGGGTGTACCAGGCAAGAAGTGTGGGACCATATTGCT
GACTGCAGAGGAGCTTAGCAATTGCCGGGATATTGCCACCATGCAGCTTTGTGCAAACAAGCTG
GACAAGAAGGACTTCTTTGGGAAATCAGACCCCTTCCTTGTGTTCTACAGGAGCAATGAGGATG
GCACGTTTACCATCTGCCACAAGACAGAAGTTGTGAAAAACACGCTGAATCCTGTGTGGCAGCC
CTTTAGCATCCCTGTGCGGGCATTATGCAATGGAGACTACGACAGAACAGTGAAAATTGACGTG
TACGACTGGGACCGGGATGGAAGCCACGACTTCATCGGTGAGTTCACAACCAGCTACAGAGAGC
TGAGCAAGGCCCAGAACCAGTTCACAGTGTATGAGGTACTTAACCCTCGGAAGAAATGTAAGAA
AAAGAAATATGTCAACTCGGGAACTGTGACGCTGCTTTCCTTCTCTGTGGACTCTGAATTCACT
TTTGTCGATTACATCAAGGGAGGGACACAACTGAACTTCACAGTAGCCATTGATTTCACAGCTT
CCAATGGGAATCCCCTGCAGCCCACCTCCCTGCACTACATGAGTCCCTATCAGCTCAGCGCCTA
TGCCATGGCCCTCAAGGCAGTGGGAGAAATCATCCAGGACTATGACAGTGATAAACTCTTCCCA
GCCTACGGCTTTGGGGCCAAGCTGCCTCCTGAGGGACGGATCTCCCATCAGTTCCCCCTGAACA
ACAATGACGAAGACCCCAACTGTGCGGGCATTGAGGGCGTGCTAGAGAGCTACTTCCAGAGCCT
GCGCACAGTGCAGCTCTACGGGCCCACCTACTTCGCTCCTGTCATCAACCAGGTGGCCAGGGCT
GCAGCCAAGATCTCTGATGGTTCCCAGTACTATGTTCTGCTCATCATCACGGATGGGGTCATCT
CTGACATGACACAGACCAAAGAGGCCATTGTCAGTGCCTCCTCCCTGCCCATGTCTATTATTAT
TGTTGGTGTGGGACCAGCCATGTTTGAGGCAATGGAAGAGTTGGATGGCGATGACGTGCGCGTG
TCCTCTAGGGGACGATATGCAGAGCGGGACATCGTTCAGTTCGTCCCATTCCGAGACTATGTCG
ACCGGTCAGGGAACCAGGTGCTAAGCATGGCCCGACTAGCCAAGGATGTGCTGGCTGAGATCCC
GGAGCAGCTACTGTCCTATATGCGCACCAGGGACATCCAGCCTCGCCCTCCACCACCTGCCAAC
CCCAGCCCAACGCCAGCTCCAGAGCAGCCCTGAGATCGCAACTATCCATTGCCTAGCAGTCTGC
CGCCTGCCCACCTACTGCTTCTGCTGAAACCCAGAGGCACCTGGAACCCTGGACGTCACTGGAG
GCCAACTTGGAGGATTGGAGCTGGCTGATCAAGCCCTCTGCTCCCTCATCCAGAAGGGCCTAGC
ACTATCACCACCTCCCTGCCTTCATGCCAGTAATAAAGCTGATCTTTACTCCA

hide sequence

RefSeq Acc Id:

XM_021069297 ⟹ XP_020924956

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	65,996,463 - 66,019,080 (+)	NCBI

Sequence:

show sequence

ACACGCAGAGCCGGGCCAGCCAGGAGTGGCGGGAGTTCGGACGGACCGAGGTGATCGATAACAC
GCTGAATCCAGACTTTGTGCGCAAATTCGTCCTTGACTATTTCTTTGAGGAAAAGCAAAACCTG
CGCTTCGATGTGTACAATGTCGACTCCAAAACGAACATCTCCAAACCGGGGTGTACCAGGCAAG
AAGTGTGGGACCATATTGCTGACTGCAGAGGAGCTTAGCAATTGCCGGGATATTGCCACCATGC
AGCTTTGTGCAAACAAGCTGGACAAGAAGGACTTCTTTGGGAAATCAGACCCCTTCCTTGTGTT
CTACAGGAGCAATGAGGATGGCACGTTTACCATCTGCCACAAGACAGAAGTTGTGAAAAACACG
CTGAATCCTGTGTGGCAGCCCTTTAGCATCCCTGTGCGGGCATTATGCAATGGAGACTACGACA
GAACAGTGAAAATTGACGTGTACGACTGGGACCGGGATGGAAGCCACGACTTCATCGGTGAGTT
CACAACCAGCTACAGAGAGCTGAGCAAGGCCCAGAACCAGTTCACAGTGTATGAGGTACTTAAC
CCTCGGAAGAAATGTAAGAAAAAGAAATATGTCAACTCGGGAACTGTGACGCTGCTTTCCTTCT
CTGTGGACTCTGAATTCACTTTTGTCGATTACATCAAGGGAGGGACACAACTGAACTTCACAGT
AGCCATTGATTTCACAGCTTCCAATGGGAATCCCCTGCAGCCCACCTCCCTGCACTACATGAGT
CCCTATCAGCTCAGCGCCTATGCCATGGCCCTCAAGGCAGTGGGAGAAATCATCCAGGACTATG
ACAGTGATAAACTCTTCCCAGCCTACGGCTTTGGGGCCAAGCTGCCTCCTGAGGGACGGATCTC
CCATCAGTTCCCCCTGAACAACAATGACGAAGACCCCAACTGTGCGGGCATTGAGGGCGTGCTA
GAGAGCTACTTCCAGAGCCTGCGCACAGTGCAGCTCTACGGGCCCACCTACTTCGCTCCTGTCA
TCAACCAGGTGGCCAGGGCTGCAGCCAAGATCTCTGATGGTTCCCAGTACTATGTTCTGCTCAT
CATCACGGATGGGGTCATCTCTGACATGACACAGACCAAAGAGGCCATTGTCAGTGCCTCCTCC
CTGCCCATGTCTATTATTATTGTTGGTGTGGGACCAGCCATGTTTGAGGCAATGGAAGAGTTGG
ATGGCGATGACGTGCGCGTGTCCTCTAGGGGACGATATGCAGAGCGGGACATCGTTCAGTTCGT
CCCATTCCGAGACTATGTCGACCGGTCAGGGAACCAGGTGCTAAGCATGGCCCGACTAGCCAAG
GATGTGCTGGCTGAGATCCCGGAGCAGCTACTGTCCTATATGCGCACCAGGGACATCCAGCCTC
GCCCTCCACCACCTGCCAACCCCAGCCCAACGCCAGCTCCAGAGCAGCCCTGAGATCGCAACTA
TCCATTGCCTAGCAGTCTGCCGCCTGCCCACCTACTGCTTCTGCTGAAACCCAGAGGCACCTGG
AACCCTGGACGTCACTGGAGGCCAACTTGGAGGATTGGAGCTGGCTGATCAAGCCCTCTGCTCC
CTCATCCAGAAGGGCCTAGCACTATCACCACCTCCCTGCCTTCATGCCAGTAATAAAGCTGATC
TTTACTCCA

hide sequence

RefSeq Acc Id:

XM_021069298 ⟹ XP_020924957

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	65,996,968 - 66,019,080 (+)	NCBI

Sequence:

show sequence

ATCCAAGTTGAATTCAGGGCCGAGGCCGCCCCTCCCTCCACCCACAATTATAACCAGGACTTGA
AATCTGACCCCTTTTCCAGCCTCTCTCCCATCAGCCCTGCCCCACGTTGGTCCCACTCTCTTCC
CAGGTACAATGTCGACTCCAAAACGAACATCTCCAAACCGGGGTGTACCAGGCAAGAAGTGTGG
GACCATATTGCTGACTGCAGAGGAGCTTAGCAATTGCCGGGATATTGCCACCATGCAGCTTTGT
GCAAACAAGCTGGACAAGAAGGACTTCTTTGGGAAATCAGACCCCTTCCTTGTGTTCTACAGGA
GCAATGAGGATGGCACGTTTACCATCTGCCACAAGACAGAAGTTGTGAAAAACACGCTGAATCC
TGTGTGGCAGCCCTTTAGCATCCCTGTGCGGGCATTATGCAATGGAGACTACGACAGAACAGTG
AAAATTGACGTGTACGACTGGGACCGGGATGGAAGCCACGACTTCATCGGTGAGTTCACAACCA
GCTACAGAGAGCTGAGCAAGGCCCAGAACCAGTTCACAGTGTATGAGGTACTTAACCCTCGGAA
GAAATGTAAGAAAAAGAAATATGTCAACTCGGGAACTGTGACGCTGCTTTCCTTCTCTGTGGAC
TCTGAATTCACTTTTGTCGATTACATCAAGGGAGGGACACAACTGAACTTCACAGTAGCCATTG
ATTTCACAGCTTCCAATGGGAATCCCCTGCAGCCCACCTCCCTGCACTACATGAGTCCCTATCA
GCTCAGCGCCTATGCCATGGCCCTCAAGGCAGTGGGAGAAATCATCCAGGACTATGACAGTGAT
AAACTCTTCCCAGCCTACGGCTTTGGGGCCAAGCTGCCTCCTGAGGGACGGATCTCCCATCAGT
TCCCCCTGAACAACAATGACGAAGACCCCAACTGTGCGGGCATTGAGGGCGTGCTAGAGAGCTA
CTTCCAGAGCCTGCGCACAGTGCAGCTCTACGGGCCCACCTACTTCGCTCCTGTCATCAACCAG
GTGGCCAGGGCTGCAGCCAAGATCTCTGATGGTTCCCAGTACTATGTTCTGCTCATCATCACGG
ATGGGGTCATCTCTGACATGACACAGACCAAAGAGGCCATTGTCAGTGCCTCCTCCCTGCCCAT
GTCTATTATTATTGTTGGTGTGGGACCAGCCATGTTTGAGGCAATGGAAGAGTTGGATGGCGAT
GACGTGCGCGTGTCCTCTAGGGGACGATATGCAGAGCGGGACATCGTTCAGTTCGTCCCATTCC
GAGACTATGTCGACCGGTCAGGGAACCAGGTGCTAAGCATGGCCCGACTAGCCAAGGATGTGCT
GGCTGAGATCCCGGAGCAGCTACTGTCCTATATGCGCACCAGGGACATCCAGCCTCGCCCTCCA
CCACCTGCCAACCCCAGCCCAACGCCAGCTCCAGAGCAGCCCTGAGATCGCAACTATCCATTGC
CTAGCAGTCTGCCGCCTGCCCACCTACTGCTTCTGCTGAAACCCAGAGGCACCTGGAACCCTGG
ACGTCACTGGAGGCCAACTTGGAGGATTGGAGCTGGCTGATCAAGCCCTCTGCTCCCTCATCCA
GAAGGGCCTAGCACTATCACCACCTCCCTGCCTTCATGCCAGTAATAAAGCTGATCTTTACTCC
A

hide sequence

RefSeq Acc Id:

XM_021069299 ⟹ XP_020924958

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	65,995,744 - 66,019,080 (+)	NCBI

Sequence:

show sequence

GTATCCTGCCGGAACCTGCTGGACCTCGACACCTTCTCCAAGTCCGACCCCATGGTGGTGCTGT
ACACGCAGAGCCGGGCCAGCCAGGAGTGGCGGGAGTTCGGACGGACCGAGGTACAATGTCGACT
CCAAAACGAACATCTCCAAACCGGGGTGTACCAGGCAAGAAGTGTGGGACCATATTGCTGACTG
CAGAGGAGCTTAGCAATTGCCGGGATATTGCCACCATGCAGCTTTGTGCAAACAAGCTGGACAA
GAAGGACTTCTTTGGGAAATCAGACCCCTTCCTTGTGTTCTACAGGAGCAATGAGGATGGCACG
TTTACCATCTGCCACAAGACAGAAGTTGTGAAAAACACGCTGAATCCTGTGTGGCAGCCCTTTA
GCATCCCTGTGCGGGCATTATGCAATGGAGACTACGACAGAACAGTGAAAATTGACGTGTACGA
CTGGGACCGGGATGGAAGCCACGACTTCATCGGTGAGTTCACAACCAGCTACAGAGAGCTGAGC
AAGGCCCAGAACCAGTTCACAGTGTATGAGGTACTTAACCCTCGGAAGAAATGTAAGAAAAAGA
AATATGTCAACTCGGGAACTGTGACGCTGCTTTCCTTCTCTGTGGACTCTGAATTCACTTTTGT
CGATTACATCAAGGGAGGGACACAACTGAACTTCACAGTAGCCATTGATTTCACAGCTTCCAAT
GGGAATCCCCTGCAGCCCACCTCCCTGCACTACATGAGTCCCTATCAGCTCAGCGCCTATGCCA
TGGCCCTCAAGGCAGTGGGAGAAATCATCCAGGACTATGACAGTGATAAACTCTTCCCAGCCTA
CGGCTTTGGGGCCAAGCTGCCTCCTGAGGGACGGATCTCCCATCAGTTCCCCCTGAACAACAAT
GACGAAGACCCCAACTGTGCGGGCATTGAGGGCGTGCTAGAGAGCTACTTCCAGAGCCTGCGCA
CAGTGCAGCTCTACGGGCCCACCTACTTCGCTCCTGTCATCAACCAGGTGGCCAGGGCTGCAGC
CAAGATCTCTGATGGTTCCCAGTACTATGTTCTGCTCATCATCACGGATGGGGTCATCTCTGAC
ATGACACAGACCAAAGAGGCCATTGTCAGTGCCTCCTCCCTGCCCATGTCTATTATTATTGTTG
GTGTGGGACCAGCCATGTTTGAGGCAATGGAAGAGTTGGATGGCGATGACGTGCGCGTGTCCTC
TAGGGGACGATATGCAGAGCGGGACATCGTTCAGTTCGTCCCATTCCGAGACTATGTCGACCGG
TCAGGGAACCAGGTGCTAAGCATGGCCCGACTAGCCAAGGATGTGCTGGCTGAGATCCCGGAGC
AGCTACTGTCCTATATGCGCACCAGGGACATCCAGCCTCGCCCTCCACCACCTGCCAACCCCAG
CCCAACGCCAGCTCCAGAGCAGCCCTGAGATCGCAACTATCCATTGCCTAGCAGTCTGCCGCCT
GCCCACCTACTGCTTCTGCTGAAACCCAGAGGCACCTGGAACCCTGGACGTCACTGGAGGCCAA
CTTGGAGGATTGGAGCTGGCTGATCAAGCCCTCTGCTCCCTCATCCAGAAGGGCCTAGCACTAT
CACCACCTCCCTGCCTTCATGCCAGTAATAAAGCTGATCTTTACTCCA

hide sequence

RefSeq Acc Id:

XM_021069300 ⟹ XP_020924959

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	66,002,005 - 66,019,080 (+)	NCBI

Sequence:

show sequence

CCATCTGCCACAAGACAGAAGTTGTGAAAAACACGCTGAATCCTGTGTGGCAGCCCTTTAGCAT
CCCTGTGCGGGCATTATGCAATGGAGACTACGACAGAACAGTGAAAATTGACGTGTACGACTGG
GACCGGGATGGAAGCTTGGCCCCTCTTCTGGCCTGAACCCCAGTGTCCTGCAGCCCAAATAGAG
GCAGGGGATAGTGGGCATAAAAGACTGGTTTCAGGGATGGCTCCAAGCCACGAGCAGCTGTTGC
TCACCCACCCCTGGCCTTATTGTAGCCACGACTTCATCGGTGAGTTCACAACCAGCTACAGAGA
GCTGAGCAAGGCCCAGAACCAGTTCACAGTGTATGAGGTACTTAACCCTCGGAAGAAATGTAAG
AAAAAGAAATATGTCAACTCGGGAACTGTGACGCTGCTTTCCTTCTCTGTGGACTCTGAATTCA
CTTTTGTCGATTACATCAAGGGAGGGACACAACTGAACTTCACAGTAGCCATTGATTTCACAGC
TTCCAATGGGAATCCCCTGCAGCCCACCTCCCTGCACTACATGAGTCCCTATCAGCTCAGCGCC
TATGCCATGGCCCTCAAGGCAGTGGGAGAAATCATCCAGGACTATGACAGTGATAAACTCTTCC
CAGCCTACGGCTTTGGGGCCAAGCTGCCTCCTGAGGGACGGATCTCCCATCAGTTCCCCCTGAA
CAACAATGACGAAGACCCCAACTGTGCGGGCATTGAGGGCGTGCTAGAGAGCTACTTCCAGAGC
CTGCGCACAGTGCAGCTCTACGGGCCCACCTACTTCGCTCCTGTCATCAACCAGGTGGCCAGGG
CTGCAGCCAAGATCTCTGATGGTTCCCAGTACTATGTTCTGCTCATCATCACGGATGGGGTCAT
CTCTGACATGACACAGACCAAAGAGGCCATTGTCAGTGCCTCCTCCCTGCCCATGTCTATTATT
ATTGTTGGTGTGGGACCAGCCATGTTTGAGGCAATGGAAGAGTTGGATGGCGATGACGTGCGCG
TGTCCTCTAGGGGACGATATGCAGAGCGGGACATCGTTCAGTTCGTCCCATTCCGAGACTATGT
CGACCGGTCAGGGAACCAGGTGCTAAGCATGGCCCGACTAGCCAAGGATGTGCTGGCTGAGATC
CCGGAGCAGCTACTGTCCTATATGCGCACCAGGGACATCCAGCCTCGCCCTCCACCACCTGCCA
ACCCCAGCCCAACGCCAGCTCCAGAGCAGCCCTGAGATCGCAACTATCCATTGCCTAGCAGTCT
GCCGCCTGCCCACCTACTGCTTCTGCTGAAACCCAGAGGCACCTGGAACCCTGGACGTCACTGG
AGGCCAACTTGGAGGATTGGAGCTGGCTGATCAAGCCCTCTGCTCCCTCATCCAGAAGGGCCTA
GCACTATCACCACCTCCCTGCCTTCATGCCAGTAATAAAGCTGATCTTTACTCCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020924953	(Get FASTA)	NCBI Sequence Viewer
	XP_020924954	(Get FASTA)	NCBI Sequence Viewer
	XP_020924955	(Get FASTA)	NCBI Sequence Viewer
	XP_020924956	(Get FASTA)	NCBI Sequence Viewer
	XP_020924957	(Get FASTA)	NCBI Sequence Viewer
	XP_020924958	(Get FASTA)	NCBI Sequence Viewer
	XP_020924959	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000012305
	ENSSSCP00000012305.5
	ENSSSCP00000051910.3
	ENSSSCP00000052071.2
	ENSSSCP00000053798.2
	ENSSSCP00000056419
	ENSSSCP00000056419.3
	ENSSSCP00015021783.1
	ENSSSCP00035016360.1
	ENSSSCP00045036942.1
	ENSSSCP00050022373.1
	ENSSSCP00055049144.1

RefSeq Acc Id:	XP_020924953 ⟸ XM_021069294
- Peptide Label:	isoform X1
- UniProtKB:	A0A8D1IST4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLSGASERSVPATKIEITVSCRNLLDLDTFSKSDPMVVLYTQSRASQEWREFGRTEVIDNTLN PDFVRKFVLDYFFEEKQNLRFDVYNVDSKTNISKPVSDCPLTGWPGTKAALSVLNDLPQNPPTP QTHPPCFPHLFLPQFPFCASFSLLFFLFDCRWDPQKDFLGQAFLALGEVIGGQGSRVERPLTGV PGKKCGTILLTAEELSNCRDIATMQLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKTEVV KNTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYE VLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLH YMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIE GVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISDMTQTKEAIVS ASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVLSMAR LAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPSPTPAPEQP hide sequence

RefSeq Acc Id:	XP_020924954 ⟸ XM_021069295
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D0NNP0 (UniProtKB/TrEMBL), A0A8D1IST4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLSGASERSVPATKIEITVSCRNLLDLDTFSKSDPMVVLYTQSRASQEWREFGRTEVIDNTLN PDFVRKFVLDYFFEEKQNLRFDVYNVDSKTNISKPKDFLGQAFLALGEVIGGQGSRVERPLTGV PGKKCGTILLTAEELSNCRDIATMQLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKTEVV KNTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYE VLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLH YMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIE GVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISDMTQTKEAIVS ASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVLSMAR LAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPSPTPAPEQP hide sequence

RefSeq Acc Id:	XP_020924955 ⟸ XM_021069296
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1IST4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLSGASERSVPATKIEITVSCRNLLDLDTFSKSDPMVVLYTQSRASQEWREFGRTEVIDNTLN PDFVRKFVLDYFFEEKQNLRFDVYNVDSKTNISKPDFLGQAFLALGEVIGGQGSRVERPLTGVP GKKCGTILLTAEELSNCRDIATMQLCANKLDKKDFFGKSDPFLVFYRSNEDGTFTICHKTEVVK NTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYRELSKAQNQFTVYEV LNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASNGNPLQPTSLHY MSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEG VLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISDMTQTKEAIVSA SSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYVDRSGNQVLSMARL AKDVLAEIPEQLLSYMRTRDIQPRPPPPANPSPTPAPEQP hide sequence

RefSeq Acc Id:

XP_020924958 ⟸ XM_021069299

- Peptide Label:

isoform X5

- Sequence:

show sequence

MSTPKRTSPNRGVPGKKCGTILLTAEELSNCRDIATMQLCANKLDKKDFFGKSDPFLVFYRSNE
DGTFTICHKTEVVKNTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYR
ELSKAQNQFTVYEVLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFT
ASNGNPLQPTSLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPL
NNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGV
ISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDY
VDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPSPTPAPEQP

hide sequence

RefSeq Acc Id:

XP_020924956 ⟸ XM_021069297

- Peptide Label:

isoform X4

- Sequence:

show sequence

MCTMSTPKRTSPNRGVPGKKCGTILLTAEELSNCRDIATMQLCANKLDKKDFFGKSDPFLVFYR
SNEDGTFTICHKTEVVKNTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTT
SYRELSKAQNQFTVYEVLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAI
DFTASNGNPLQPTSLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQ
FPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIIT
DGVISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPF
RDYVDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPSPTPAPEQP

hide sequence

RefSeq Acc Id:

XP_020924957 ⟸ XM_021069298

- Peptide Label:

isoform X5

- Sequence:

show sequence

MSTPKRTSPNRGVPGKKCGTILLTAEELSNCRDIATMQLCANKLDKKDFFGKSDPFLVFYRSNE
DGTFTICHKTEVVKNTLNPVWQPFSIPVRALCNGDYDRTVKIDVYDWDRDGSHDFIGEFTTSYR
ELSKAQNQFTVYEVLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFT
ASNGNPLQPTSLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPL
NNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGV
ISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDY
VDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPSPTPAPEQP

hide sequence

RefSeq Acc Id:

XP_020924959 ⟸ XM_021069300

- Peptide Label:

isoform X6

- Sequence:

show sequence

MEAWPLFWPEPQCPAAQIEAGDSGHKRLVSGMAPSHEQLLLTHPWPYCSHDFIGEFTTSYRELS
KAQNQFTVYEVLNPRKKCKKKKYVNSGTVTLLSFSVDSEFTFVDYIKGGTQLNFTVAIDFTASN
GNPLQPTSLHYMSPYQLSAYAMALKAVGEIIQDYDSDKLFPAYGFGAKLPPEGRISHQFPLNNN
DEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISDGSQYYVLLIITDGVISD
MTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRVSSRGRYAERDIVQFVPFRDYVDR
SGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQPRPPPPANPSPTPAPEQP

hide sequence

RefSeq Acc Id:

ENSSSCP00000042922 ⟸ ENSSSCT00000054604

RefSeq Acc Id:

ENSSSCP00000056419 ⟸ ENSSSCT00000040278

RefSeq Acc Id:

ENSSSCP00000046503 ⟸ ENSSSCT00000044434

RefSeq Acc Id:

ENSSSCP00000056395 ⟸ ENSSSCT00000051621

RefSeq Acc Id:

ENSSSCP00000052071 ⟸ ENSSSCT00000061346

RefSeq Acc Id:

ENSSSCP00000053604 ⟸ ENSSSCT00000049813

RefSeq Acc Id:

ENSSSCP00000053798 ⟸ ENSSSCT00000045385

RefSeq Acc Id:

ENSSSCP00000051910 ⟸ ENSSSCT00000037009

RefSeq Acc Id:

ENSSSCP00000012305 ⟸ ENSSSCT00000012637

Protein Domains

C2 VWFA

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000011546	Ensembl, UniProtKB/TrEMBL
	ENSSSCG00000054876	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015040735	UniProtKB/TrEMBL
	ENSSSCG00035030836	UniProtKB/TrEMBL
	ENSSSCG00045030823	UniProtKB/TrEMBL
	ENSSSCG00050039456	UniProtKB/TrEMBL
	ENSSSCG00055030715	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000012637	ENTREZGENE
	ENSSSCT00000012637.5	UniProtKB/TrEMBL
	ENSSSCT00000037009.3	UniProtKB/TrEMBL
	ENSSSCT00000040278	ENTREZGENE
	ENSSSCT00000040278.3	UniProtKB/TrEMBL
	ENSSSCT00000045385.3	UniProtKB/TrEMBL
	ENSSSCT00000061346.2	UniProtKB/TrEMBL
	ENSSSCT00015054319.1	UniProtKB/TrEMBL
	ENSSSCT00035040891.1	UniProtKB/TrEMBL
	ENSSSCT00045053105.1	UniProtKB/TrEMBL
	ENSSSCT00050053262.1	UniProtKB/TrEMBL
	ENSSSCT00055061270.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.150	UniProtKB/TrEMBL
	3.90.190.10	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	C2B_Copine	UniProtKB/TrEMBL
	Copine	UniProtKB/TrEMBL
	Copine	UniProtKB/TrEMBL
	MTMR14	UniProtKB/TrEMBL
	MTMR14_PH-GRAM	UniProtKB/TrEMBL
	Prot-tyrosine_phosphatase-like	UniProtKB/TrEMBL
	Tyr_Pase_AS	UniProtKB/TrEMBL
	VWF_A	UniProtKB/TrEMBL
	vWFA_dom_sf	UniProtKB/TrEMBL
NCBI Gene	CPNE9	ENTREZGENE
PANTHER	COPINE-9	UniProtKB/TrEMBL
	MYOTUBULARIN-RELATED PROTEIN 14	UniProtKB/TrEMBL
	PTHR10857	UniProtKB/TrEMBL
	PTHR13524	UniProtKB/TrEMBL
Pfam	Copine	UniProtKB/TrEMBL
	PF00168	UniProtKB/TrEMBL
PROSITE	PS50004	UniProtKB/TrEMBL
	TYR_PHOSPHATASE_1	UniProtKB/TrEMBL
	VWFA	UniProtKB/TrEMBL
SMART	SM00239	UniProtKB/TrEMBL
	VWA	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49562	UniProtKB/TrEMBL
	SSF52799	UniProtKB/TrEMBL
	SSF53300	UniProtKB/TrEMBL
UniProt	A0A287B6C9_PIG	UniProtKB/TrEMBL
	A0A287B722_PIG	UniProtKB/TrEMBL
	A0A287BBA3_PIG	UniProtKB/TrEMBL
	A0A287BJ66_PIG	UniProtKB/TrEMBL
	A0A8D0NNP0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1IST4	ENTREZGENE, UniProtKB/TrEMBL
	F1SR26_PIG	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar