HSD17B12 (hydroxysteroid 17-beta dehydrogenase 12) - Rat Genome Database

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Gene: HSD17B12 (hydroxysteroid 17-beta dehydrogenase 12) Sus scrofa
Analyze
Symbol: HSD17B12
Name: hydroxysteroid 17-beta dehydrogenase 12
RGD ID: 14266213
Description: ENCODES a protein that exhibits collagen binding (inferred); fibronectin binding (inferred); heparin binding (inferred); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); extracellular matrix (inferred); INTERACTS WITH resveratrol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: very-long-chain 3-oxoacyl-CoA reductase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl218,456,019 - 18,611,782 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1218,461,487 - 18,611,761 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2220,061,561 - 20,211,999 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
resveratrol  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HSD17B12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl218,456,019 - 18,611,782 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1218,461,487 - 18,611,761 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2220,061,561 - 20,211,999 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HSD17B12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381143,556,721 - 43,856,615 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1143,680,680 - 43,856,617 (+)EnsemblGRCh38hg38GRCh38
GRCh371143,702,288 - 43,878,165 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361143,658,719 - 43,834,745 (+)NCBINCBI36Build 36hg18NCBI36
Build 341143,658,880 - 43,834,744NCBI
Celera1143,848,404 - 44,024,379 (+)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1143,412,072 - 43,587,812 (+)NCBIHuRef
CHM1_11143,701,792 - 43,877,827 (+)NCBICHM1_1
T2T-CHM13v2.01143,731,842 - 44,012,332 (+)NCBIT2T-CHM13v2.0
Hsd17b12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39293,863,042 - 93,988,254 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl293,863,034 - 93,988,309 (-)EnsemblGRCm39 Ensembl
GRCm38294,032,697 - 94,157,909 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl294,032,689 - 94,157,964 (-)EnsemblGRCm38mm10GRCm38
MGSCv37293,872,854 - 93,998,066 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36293,833,536 - 93,958,748 (-)NCBIMGSCv36mm8
Celera295,429,240 - 95,554,423 (-)NCBICelera
Cytogenetic Map2E1NCBI
cM Map251.62NCBI
Hsd17b12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,445,393 - 100,568,898 (-)NCBIGRCr8
mRatBN7.2379,990,048 - 80,113,556 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl379,990,056 - 80,113,617 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx383,463,561 - 83,587,647 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0392,062,651 - 92,186,743 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0389,908,167 - 90,032,005 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0382,924,699 - 83,048,465 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl382,924,687 - 83,048,435 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,626,176 - 89,749,541 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,436,634 - 78,559,707 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1378,333,061 - 78,456,135 (-)NCBI
Celera379,190,922 - 79,314,232 (-)NCBICelera
Cytogenetic Map3q31NCBI
Hsd17b12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554223,717,666 - 3,864,801 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554223,721,452 - 3,864,801 (-)NCBIChiLan1.0ChiLan1.0
HSD17B12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2945,895,986 - 46,071,909 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11145,901,905 - 46,077,829 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01143,641,323 - 43,817,214 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11144,137,597 - 44,312,986 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1144,137,597 - 44,312,986 (+)Ensemblpanpan1.1panPan2
HSD17B12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11825,907,366 - 26,061,643 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1825,908,555 - 26,061,616 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1825,594,145 - 25,748,413 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01826,529,683 - 26,683,219 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1826,529,049 - 26,683,212 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11826,039,150 - 26,192,361 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01825,684,733 - 25,839,066 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01826,296,764 - 26,451,042 (-)NCBIUU_Cfam_GSD_1.0
Hsd17b12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494722,688,930 - 22,837,837 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365624,802,282 - 4,949,468 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365624,802,282 - 4,949,500 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSD17B12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,530,292 - 21,702,552 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,528,391 - 21,702,455 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038118,767,304 - 118,938,354 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hsd17b12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247674,160,053 - 4,316,370 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247674,163,452 - 4,315,827 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HSD17B12
5814 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 2 3 5 2 23 2 2 3
Low 1 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000027104   ⟹   ENSSSCP00000022297
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl218,461,111 - 18,611,782 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000031374   ⟹   ENSSSCP00000024401
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl218,456,019 - 18,611,722 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071339   ⟹   ENSSSCP00000059989
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl218,456,019 - 18,611,722 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000073361   ⟹   ENSSSCP00000064884
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl218,456,019 - 18,611,722 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000090088   ⟹   ENSSSCP00000067015
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl218,556,731 - 18,611,782 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000103848   ⟹   ENSSSCP00000080980
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl218,461,503 - 18,611,702 (-)Ensembl
RefSeq Acc Id: XM_021083164   ⟹   XP_020938823
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1218,461,487 - 18,611,760 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021083165   ⟹   XP_020938824
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1218,461,493 - 18,611,761 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020938823 (Get FASTA)   NCBI Sequence Viewer  
  XP_020938824 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAI47714 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000022297.3
  ENSSSCP00000024401
  ENSSSCP00000024401.2
  ENSSSCP00000059989.1
  ENSSSCP00000067015.1
  ENSSSCP00000080980.1
  ENSSSCP00005038571.1
  ENSSSCP00005038581.1
  ENSSSCP00005038595.1
  ENSSSCP00005038621.1
  ENSSSCP00005038635.1
  ENSSSCP00005038660.1
  ENSSSCP00015011619.1
  ENSSSCP00015011672.1
  ENSSSCP00025003916.1
  ENSSSCP00025003930.1
  ENSSSCP00025003941.1
  ENSSSCP00025003948.1
  ENSSSCP00025003954.1
  ENSSSCP00030026261.1
  ENSSSCP00030026276.1
  ENSSSCP00030026293.1
  ENSSSCP00030026310.1
  ENSSSCP00030026323.1
  ENSSSCP00035017710.1
  ENSSSCP00035017717.1
  ENSSSCP00035017721.1
  ENSSSCP00035017724.1
  ENSSSCP00035017729.1
  ENSSSCP00040038011.1
  ENSSSCP00040038076.1
  ENSSSCP00040038140.1
  ENSSSCP00040038264.1
  ENSSSCP00045042796.1
  ENSSSCP00045042874.1
  ENSSSCP00045042938.1
  ENSSSCP00045043038.1
  ENSSSCP00050001493.1
  ENSSSCP00050001512.1
  ENSSSCP00050001519.1
  ENSSSCP00050001530.1
  ENSSSCP00055024344.1
  ENSSSCP00055024413.1
  ENSSSCP00055024479.1
  ENSSSCP00055024532.1
  ENSSSCP00055024577.1
  ENSSSCP00060004840.1
  ENSSSCP00060004847.1
  ENSSSCP00060004851.1
  ENSSSCP00060004858.1
  ENSSSCP00060004861.1
  ENSSSCP00065005387.1
  ENSSSCP00065005395.1
  ENSSSCP00065005398.1
  ENSSSCP00065005402.1
  ENSSSCP00070001678.1
  ENSSSCP00070001699.1
  ENSSSCP00070001716.1
  ENSSSCP00070001719.1
  ENSSSCP00070001726.1
RefSeq Acc Id: XP_020938823   ⟸   XM_021083164
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SHZ3 (UniProtKB/TrEMBL),   I3LJY8 (UniProtKB/TrEMBL),   A0A8D0N1J0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938824   ⟸   XM_021083165
- Peptide Label: isoform X2
- UniProtKB: A0A8D1CSI3 (UniProtKB/TrEMBL),   A0A8D0QNP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000067015   ⟸   ENSSSCT00000090088
RefSeq Acc Id: ENSSSCP00000024401   ⟸   ENSSSCT00000031374
RefSeq Acc Id: ENSSSCP00000022297   ⟸   ENSSSCT00000027104
RefSeq Acc Id: ENSSSCP00000059989   ⟸   ENSSSCT00000071339
RefSeq Acc Id: ENSSSCP00000064884   ⟸   ENSSSCT00000073361
RefSeq Acc Id: ENSSSCP00000080980   ⟸   ENSSSCT00000103848


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021739 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005038699 UniProtKB/TrEMBL
  ENSSSCG00015022309 UniProtKB/TrEMBL
  ENSSSCG00025007369 UniProtKB/TrEMBL
  ENSSSCG00030041528 UniProtKB/TrEMBL
  ENSSSCG00035033357 UniProtKB/TrEMBL
  ENSSSCG00040063464 UniProtKB/TrEMBL
  ENSSSCG00045035423 UniProtKB/TrEMBL
  ENSSSCG00050003053 UniProtKB/TrEMBL
  ENSSSCG00055015499 UniProtKB/TrEMBL
  ENSSSCG00060009908 UniProtKB/TrEMBL
  ENSSSCG00065009879 UniProtKB/TrEMBL
  ENSSSCG00070001040 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000027104.3 UniProtKB/TrEMBL
  ENSSSCT00000031374 ENTREZGENE
  ENSSSCT00000031374.3 UniProtKB/TrEMBL
  ENSSSCT00000071339.1 UniProtKB/TrEMBL
  ENSSSCT00000090088.1 UniProtKB/TrEMBL
  ENSSSCT00000103848.1 UniProtKB/TrEMBL
  ENSSSCT00005062400.1 UniProtKB/TrEMBL
  ENSSSCT00005062425.1 UniProtKB/TrEMBL
  ENSSSCT00005062449.1 UniProtKB/TrEMBL
  ENSSSCT00005062488.1 UniProtKB/TrEMBL
  ENSSSCT00005062506.1 UniProtKB/TrEMBL
  ENSSSCT00005062548.1 UniProtKB/TrEMBL
  ENSSSCT00015029513.1 UniProtKB/TrEMBL
  ENSSSCT00015029644.1 UniProtKB/TrEMBL
  ENSSSCT00025009820.1 UniProtKB/TrEMBL
  ENSSSCT00025009850.1 UniProtKB/TrEMBL
  ENSSSCT00025009879.1 UniProtKB/TrEMBL
  ENSSSCT00025009897.1 UniProtKB/TrEMBL
  ENSSSCT00025009910.1 UniProtKB/TrEMBL
  ENSSSCT00030057728.1 UniProtKB/TrEMBL
  ENSSSCT00030057755.1 UniProtKB/TrEMBL
  ENSSSCT00030057784.1 UniProtKB/TrEMBL
  ENSSSCT00030057811.1 UniProtKB/TrEMBL
  ENSSSCT00030057838.1 UniProtKB/TrEMBL
  ENSSSCT00035044211.1 UniProtKB/TrEMBL
  ENSSSCT00035044221.1 UniProtKB/TrEMBL
  ENSSSCT00035044234.1 UniProtKB/TrEMBL
  ENSSSCT00035044240.1 UniProtKB/TrEMBL
  ENSSSCT00035044247.1 UniProtKB/TrEMBL
  ENSSSCT00040086656.1 UniProtKB/TrEMBL
  ENSSSCT00040086773.1 UniProtKB/TrEMBL
  ENSSSCT00040086887.1 UniProtKB/TrEMBL
  ENSSSCT00040087136.1 UniProtKB/TrEMBL
  ENSSSCT00045060927.1 UniProtKB/TrEMBL
  ENSSSCT00045061036.1 UniProtKB/TrEMBL
  ENSSSCT00045061125.1 UniProtKB/TrEMBL
  ENSSSCT00045061268.1 UniProtKB/TrEMBL
  ENSSSCT00050003990.1 UniProtKB/TrEMBL
  ENSSSCT00050004014.1 UniProtKB/TrEMBL
  ENSSSCT00050004022.1 UniProtKB/TrEMBL
  ENSSSCT00050004037.1 UniProtKB/TrEMBL
  ENSSSCT00055030584.1 UniProtKB/TrEMBL
  ENSSSCT00055030665.1 UniProtKB/TrEMBL
  ENSSSCT00055030746.1 UniProtKB/TrEMBL
  ENSSSCT00055030810.1 UniProtKB/TrEMBL
  ENSSSCT00055030863.1 UniProtKB/TrEMBL
  ENSSSCT00060012818.1 UniProtKB/TrEMBL
  ENSSSCT00060012829.1 UniProtKB/TrEMBL
  ENSSSCT00060012837.1 UniProtKB/TrEMBL
  ENSSSCT00060012846.1 UniProtKB/TrEMBL
  ENSSSCT00060012853.1 UniProtKB/TrEMBL
  ENSSSCT00065013205.1 UniProtKB/TrEMBL
  ENSSSCT00065013215.1 UniProtKB/TrEMBL
  ENSSSCT00065013220.1 UniProtKB/TrEMBL
  ENSSSCT00065013224.1 UniProtKB/TrEMBL
  ENSSSCT00070002006.1 UniProtKB/TrEMBL
  ENSSSCT00070002028.1 UniProtKB/TrEMBL
  ENSSSCT00070002045.1 UniProtKB/TrEMBL
  ENSSSCT00070002048.1 UniProtKB/TrEMBL
  ENSSSCT00070002055.1 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  Sc_DH/Rdtase_CS UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
NCBI Gene HSD17B12 ENTREZGENE
PANTHER RH59310P UniProtKB/TrEMBL
  VERY-LONG-CHAIN 3-OXOACYL-COA REDUCTASE UniProtKB/TrEMBL
Pfam adh_short UniProtKB/TrEMBL
PIRSF 11-beta-HSD1 UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
  SDRFAMILY UniProtKB/TrEMBL
PROSITE ADH_SHORT UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt A0A4X1SHD5_PIG UniProtKB/TrEMBL
  A0A4X1SHH1_PIG UniProtKB/TrEMBL
  A0A4X1SHZ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SI12_PIG UniProtKB/TrEMBL
  A0A4X1SIP1_PIG UniProtKB/TrEMBL
  A0A8D0K6Q4_PIG UniProtKB/TrEMBL
  A0A8D0N1J0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QNP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UGU6_PIG UniProtKB/TrEMBL
  A0A8D1CSI3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FJ51_PIG UniProtKB/TrEMBL
  A0A8D1XIC2_PIG UniProtKB/TrEMBL
  A0A8D1XLI7_PIG UniProtKB/TrEMBL
  D0G6Y0_PIG UniProtKB/TrEMBL
  I3LJY8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2Q7E1 UniProtKB/TrEMBL
  A0A5G2QQ44 UniProtKB/TrEMBL
  A0A5G2R2V8 UniProtKB/TrEMBL
  I3LE12 UniProtKB/TrEMBL
VGNC ID VGNC:88986 ENTREZGENE