ABCC1 (ATP binding cassette subfamily C member 1) - Rat Genome Database

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Gene: ABCC1 (ATP binding cassette subfamily C member 1) Sus scrofa
Analyze
Symbol: ABCC1
Name: ATP binding cassette subfamily C member 1
RGD ID: 14265621
Description: ENCODES a protein that exhibits ABC-type vitamin B12 transporter activity (ortholog); ABC-type xenobiotic transporter activity (ortholog); amide transmembrane transporter activity (ortholog); INVOLVED IN astrocyte differentiation (ortholog); cell chemotaxis (ortholog); cellular response to amyloid-beta (ortholog); PARTICIPATES IN docetaxel pharmacodynamics pathway; doxorubicin pharmacokinetics pathway; irinotecan pharmacodynamics pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); asthma (ortholog); autistic disorder (ortholog); FOUND IN basal plasma membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-binding cassette sub-family C member 1; multidrug resistance-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl328,360,873 - 28,473,456 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1328,360,868 - 28,472,940 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2329,082,788 - 29,172,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl328,360,873 - 28,473,456 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1328,360,868 - 28,472,940 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2329,082,788 - 29,172,693 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ABCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381615,949,143 - 16,143,053 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1615,949,138 - 16,143,257 (+)EnsemblGRCh38hg38GRCh38
GRCh371616,043,473 - 16,236,910 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361615,950,935 - 16,144,432 (+)NCBINCBI36Build 36hg18NCBI36
Build 341615,950,934 - 16,143,774NCBI
Celera1615,781,784 - 15,917,085 (+)NCBICelera
Cytogenetic Map16p13.11NCBI
HuRef1615,436,705 - 15,630,893 (+)NCBIHuRef
CHM1_11616,185,916 - 16,321,192 (+)NCBICHM1_1
T2T-CHM13v2.01615,954,068 - 16,147,908 (+)NCBIT2T-CHM13v2.0
Abcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391614,179,317 - 14,292,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1614,179,422 - 14,293,601 (+)EnsemblGRCm39 Ensembl
GRCm381614,361,453 - 14,474,878 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1614,361,558 - 14,475,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv371614,361,653 - 14,474,968 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361614,275,138 - 14,388,453 (+)NCBIMGSCv36mm8
Celera1614,966,079 - 15,077,783 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.75NCBI
Abcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8101,022,041 - 1,162,431 (-)NCBIGRCr8
mRatBN7.210528,961 - 655,179 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10531,812 - 655,114 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx105,228,580 - 5,351,880 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01035,213,968 - 35,337,275 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010543,174 - 666,513 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010549,537 - 672,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10549,883 - 672,196 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01011,232,233 - 11,354,931 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410452,239 - 575,705 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110452,238 - 575,705 (-)NCBI
Celera1011,130,945 - 11,246,232 (-)NCBICelera
Cytogenetic Map10q11NCBI
Abcc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955442729,316 - 860,290 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955442729,322 - 858,826 (+)NCBIChiLan1.0ChiLan1.0
ABCC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21816,295,604 - 16,482,561 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11619,921,573 - 20,108,728 (+)NCBINHGRI_mPanPan1
ABCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1627,855,702 - 27,950,140 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl627,855,702 - 27,989,331 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha629,219,306 - 29,353,121 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0628,018,483 - 28,152,589 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl628,010,824 - 28,152,766 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1627,821,973 - 27,955,836 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0627,711,967 - 27,845,729 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0628,117,166 - 28,251,282 (-)NCBIUU_Cfam_GSD_1.0
Abcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344115,297,821 - 115,369,238 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365013,401,285 - 3,470,460 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365013,400,971 - 3,467,061 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,972,589 - 15,164,594 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl514,972,646 - 15,164,567 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606814,816,018 - 14,953,501 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abcc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624782449,288 - 591,310 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624782449,217 - 590,306 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ABCC1
3668 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000051120   ⟹   ENSSSCP00000041189
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl328,360,873 - 28,473,456 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000060414   ⟹   ENSSSCP00000051623
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl328,360,873 - 28,472,919 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000064521   ⟹   ENSSSCP00000034610
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl328,360,873 - 28,472,919 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000097979   ⟹   ENSSSCP00000080142
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl328,360,874 - 28,472,919 (-)Ensembl
RefSeq Acc Id: XM_021086560   ⟹   XP_020942219
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1328,360,868 - 28,472,940 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020942219   ⟸   XM_021086560
- UniProtKB: A0A8D1T0M8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000034610   ⟸   ENSSSCT00000064521
Ensembl Acc Id: ENSSSCP00000041189   ⟸   ENSSSCT00000051120
Ensembl Acc Id: ENSSSCP00000051623   ⟸   ENSSSCT00000060414
Ensembl Acc Id: ENSSSCP00000080142   ⟸   ENSSSCT00000097979

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007874 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025015104 UniProtKB/TrEMBL
  ENSSSCG00030035965 UniProtKB/TrEMBL
  ENSSSCG00035058850 UniProtKB/TrEMBL
  ENSSSCG00040013117 UniProtKB/TrEMBL
  ENSSSCG00045021131 UniProtKB/TrEMBL
  ENSSSCG00055006929 UniProtKB/TrEMBL
  ENSSSCG00060011948 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000051120 ENTREZGENE
  ENSSSCT00000051120.3 UniProtKB/TrEMBL
  ENSSSCT00000060414.3 UniProtKB/TrEMBL
  ENSSSCT00000064521.3 UniProtKB/TrEMBL
  ENSSSCT00000097979.1 UniProtKB/TrEMBL
  ENSSSCT00025020280.1 UniProtKB/TrEMBL
  ENSSSCT00025020316.1 UniProtKB/TrEMBL
  ENSSSCT00025020419.1 UniProtKB/TrEMBL
  ENSSSCT00025020448.1 UniProtKB/TrEMBL
  ENSSSCT00025020568.1 UniProtKB/TrEMBL
  ENSSSCT00025020702.1 UniProtKB/TrEMBL
  ENSSSCT00025020842.1 UniProtKB/TrEMBL
  ENSSSCT00025020900.1 UniProtKB/TrEMBL
  ENSSSCT00025020983.1 UniProtKB/TrEMBL
  ENSSSCT00030049976.1 UniProtKB/TrEMBL
  ENSSSCT00030050022.1 UniProtKB/TrEMBL
  ENSSSCT00030050062.1 UniProtKB/TrEMBL
  ENSSSCT00030050078.1 UniProtKB/TrEMBL
  ENSSSCT00030050112.1 UniProtKB/TrEMBL
  ENSSSCT00030050134.1 UniProtKB/TrEMBL
  ENSSSCT00035078799.1 UniProtKB/TrEMBL
  ENSSSCT00035078831.1 UniProtKB/TrEMBL
  ENSSSCT00035078840.1 UniProtKB/TrEMBL
  ENSSSCT00035078876.1 UniProtKB/TrEMBL
  ENSSSCT00035078911.1 UniProtKB/TrEMBL
  ENSSSCT00035078925.1 UniProtKB/TrEMBL
  ENSSSCT00035078939.1 UniProtKB/TrEMBL
  ENSSSCT00035078949.1 UniProtKB/TrEMBL
  ENSSSCT00040017431.1 UniProtKB/TrEMBL
  ENSSSCT00040017464.1 UniProtKB/TrEMBL
  ENSSSCT00040017513.1 UniProtKB/TrEMBL
  ENSSSCT00040017543.1 UniProtKB/TrEMBL
  ENSSSCT00040017564.1 UniProtKB/TrEMBL
  ENSSSCT00045036136.1 UniProtKB/TrEMBL
  ENSSSCT00045036340.1 UniProtKB/TrEMBL
  ENSSSCT00045036658.1 UniProtKB/TrEMBL
  ENSSSCT00045036915.1 UniProtKB/TrEMBL
  ENSSSCT00045037220.1 UniProtKB/TrEMBL
  ENSSSCT00045037559.1 UniProtKB/TrEMBL
  ENSSSCT00045038028.1 UniProtKB/TrEMBL
  ENSSSCT00045038225.1 UniProtKB/TrEMBL
  ENSSSCT00045038421.1 UniProtKB/TrEMBL
  ENSSSCT00055013455.1 UniProtKB/TrEMBL
  ENSSSCT00055013518.1 UniProtKB/TrEMBL
  ENSSSCT00055013576.1 UniProtKB/TrEMBL
  ENSSSCT00055013662.1 UniProtKB/TrEMBL
  ENSSSCT00055013783.1 UniProtKB/TrEMBL
  ENSSSCT00055013899.1 UniProtKB/TrEMBL
  ENSSSCT00060015703.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1560.10 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ABC1_TM_dom UniProtKB/TrEMBL
  ABC1_TM_sf UniProtKB/TrEMBL
  ABC_transporter-like UniProtKB/TrEMBL
  ABC_transporter_C UniProtKB/TrEMBL
  ABC_transporter_CS UniProtKB/TrEMBL
  Multidrug-R_assoc UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene ABCC1 ENTREZGENE
PANTHER ATP-BINDING CASSETTE SUB-FAMILY C UniProtKB/TrEMBL
  MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
Pfam ABC_membrane UniProtKB/TrEMBL
  ABC_tran UniProtKB/TrEMBL
PROSITE ABC_TM1F UniProtKB/TrEMBL
  ABC_TRANSPORTER_1 UniProtKB/TrEMBL
  ABC_TRANSPORTER_2 UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF90123 UniProtKB/TrEMBL
UniProt A0A286ZSQ7_PIG UniProtKB/TrEMBL
  A0A287ABK7_PIG UniProtKB/TrEMBL
  A0A287B6A6_PIG UniProtKB/TrEMBL
  A0A8D0QXR5_PIG UniProtKB/TrEMBL
  A0A8D0QZX2_PIG UniProtKB/TrEMBL
  A0A8D0R5Z0_PIG UniProtKB/TrEMBL
  A0A8D0UJG5_PIG UniProtKB/TrEMBL
  A0A8D0WJL2_PIG UniProtKB/TrEMBL
  A0A8D0WKX0_PIG UniProtKB/TrEMBL
  A0A8D0WLZ2_PIG UniProtKB/TrEMBL
  A0A8D0WM26_PIG UniProtKB/TrEMBL
  A0A8D0WM42_PIG UniProtKB/TrEMBL
  A0A8D1AJB1_PIG UniProtKB/TrEMBL
  A0A8D1AKF6_PIG UniProtKB/TrEMBL
  A0A8D1AM35_PIG UniProtKB/TrEMBL
  A0A8D1AN97_PIG UniProtKB/TrEMBL
  A0A8D1ANG7_PIG UniProtKB/TrEMBL
  A0A8D1ANH7_PIG UniProtKB/TrEMBL
  A0A8D1C735_PIG UniProtKB/TrEMBL
  A0A8D1CZB1_PIG UniProtKB/TrEMBL
  A0A8D1CZB5_PIG UniProtKB/TrEMBL
  A0A8D1DHC5_PIG UniProtKB/TrEMBL
  A0A8D1DHJ4_PIG UniProtKB/TrEMBL
  A0A8D1DI46_PIG UniProtKB/TrEMBL
  A0A8D1DI48_PIG UniProtKB/TrEMBL
  A0A8D1DIN9_PIG UniProtKB/TrEMBL
  A0A8D1I048_PIG UniProtKB/TrEMBL
  A0A8D1I175_PIG UniProtKB/TrEMBL
  A0A8D1I2I1_PIG UniProtKB/TrEMBL
  A0A8D1L0D6_PIG UniProtKB/TrEMBL
  A0A8D1PWG9_PIG UniProtKB/TrEMBL
  A0A8D1T0M8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FLQ4_PIG UniProtKB/TrEMBL
  K9IVJ9_PIG UniProtKB/TrEMBL
  Q206K1_PIG UniProtKB/TrEMBL
VGNC ID VGNC:84952 ENTREZGENE