SEZ6L2 (seizure related 6 homolog like 2) - Rat Genome Database

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Gene: SEZ6L2 (seizure related 6 homolog like 2) Sus scrofa
Analyze
Symbol: SEZ6L2
Name: seizure related 6 homolog like 2
RGD ID: 14264812
Description: INVOLVED IN adult locomotory behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); regulation of protein kinase C signaling (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred); neuronal cell body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: seizure 6-like protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,098,102 - 18,119,558 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,098,109 - 18,119,522 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,470,703 - 18,492,157 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
SEZ6L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,098,102 - 18,119,558 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,098,109 - 18,119,522 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,470,703 - 18,492,157 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEZ6L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381629,871,159 - 29,899,550 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1629,871,159 - 29,899,550 (-)EnsemblGRCh38hg38GRCh38
GRCh371629,882,480 - 29,910,871 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361629,790,329 - 29,818,074 (-)NCBINCBI36Build 36hg18NCBI36
Celera1672,886,639 - 72,900,492 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1627,543,161 - 27,571,394 (-)NCBIHuRef
CHM1_11631,098,270 - 31,126,373 (-)NCBICHM1_1
T2T-CHM13v2.01630,153,803 - 30,182,186 (-)NCBIT2T-CHM13v2.0
Sez6l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,549,665 - 126,569,782 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,549,735 - 126,569,778 (+)EnsemblGRCm39 Ensembl
GRCm387126,950,495 - 126,970,610 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,950,563 - 126,970,606 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,094,243 - 134,113,784 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,741,711 - 126,761,751 (+)NCBIMGSCv36mm8
Celera7126,799,095 - 126,818,518 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.25NCBI
Sez6l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,987,647 - 191,007,990 (+)NCBIGRCr8
mRatBN7.21181,557,109 - 181,577,456 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,557,109 - 181,577,456 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,908,482 - 189,928,818 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,094,559 - 197,114,901 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,761,981 - 189,782,345 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01198,383,201 - 198,403,544 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,383,201 - 198,403,544 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,363,570 - 205,383,913 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,127,119 - 186,147,462 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1179,212,013 - 179,232,335 (+)NCBICelera
Cytogenetic Map1q37NCBI
Sez6l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,059,865 - 7,081,038 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,059,865 - 7,080,524 (+)NCBIChiLan1.0ChiLan1.0
SEZ6L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21830,620,889 - 30,650,071 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11635,576,555 - 35,605,000 (+)NCBINHGRI_mPanPan1
PanPan1.11630,240,276 - 30,267,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1630,240,276 - 30,267,689 (-)Ensemblpanpan1.1panPan2
SEZ6L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,920,413 - 17,938,382 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,921,311 - 17,945,738 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,497,264 - 19,516,796 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,054,164 - 18,073,745 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,054,113 - 18,073,738 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,853,599 - 17,873,164 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,769,297 - 17,788,803 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,084,602 - 18,104,166 (-)NCBIUU_Cfam_GSD_1.0
Sez6l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,464,874 - 124,484,615 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650112,563,253 - 12,581,941 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650112,562,731 - 12,582,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEZ6L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,742,455 - 26,784,405 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,742,482 - 26,784,918 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660682,746,645 - 2,775,705 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sez6l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,312,751 - 13,333,435 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,312,864 - 13,332,507 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SEZ6L2
822 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system nervous system respiratory system
High
Medium 3 23
Low 1 3 3
Below cutoff 8 2 2

Sequence


RefSeq Acc Id: ENSSSCT00000026459   ⟹   ENSSSCP00000021545
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl318,098,112 - 18,119,558 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076827   ⟹   ENSSSCP00000059928
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl318,098,112 - 18,118,929 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000086717   ⟹   ENSSSCP00000066405
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl318,098,102 - 18,118,929 (-)Ensembl
RefSeq Acc Id: XM_003354543   ⟹   XP_003354591
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1318,098,109 - 18,119,522 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003354591   ⟸   XM_003354543
- UniProtKB: I3LBX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000021545   ⟸   ENSSSCT00000026459
RefSeq Acc Id: ENSSSCP00000059928   ⟸   ENSSSCT00000076827
RefSeq Acc Id: ENSSSCP00000066405   ⟸   ENSSSCT00000086717
Protein Domains
CUB   Sushi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029186 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015060688 UniProtKB/TrEMBL
  ENSSSCG00025059398 UniProtKB/TrEMBL
  ENSSSCG00030071195 UniProtKB/TrEMBL
  ENSSSCG00035060140 UniProtKB/TrEMBL
  ENSSSCG00040039472 UniProtKB/TrEMBL
  ENSSSCG00045019230 UniProtKB/TrEMBL
  ENSSSCG00050073302 UniProtKB/TrEMBL
  ENSSSCG00055029124 UniProtKB/TrEMBL
  ENSSSCG00060073244 UniProtKB/TrEMBL
  ENSSSCG00070013561 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000026459 ENTREZGENE
  ENSSSCT00000026459.4 UniProtKB/TrEMBL
  ENSSSCT00000076827.2 UniProtKB/TrEMBL
  ENSSSCT00000086717.2 UniProtKB/TrEMBL
  ENSSSCT00015081134.1 UniProtKB/TrEMBL
  ENSSSCT00015081576.1 UniProtKB/TrEMBL
  ENSSSCT00015082278.1 UniProtKB/TrEMBL
  ENSSSCT00025081408.1 UniProtKB/TrEMBL
  ENSSSCT00025081844.1 UniProtKB/TrEMBL
  ENSSSCT00025082495.1 UniProtKB/TrEMBL
  ENSSSCT00030100470.1 UniProtKB/TrEMBL
  ENSSSCT00030100553.1 UniProtKB/TrEMBL
  ENSSSCT00030100640.1 UniProtKB/TrEMBL
  ENSSSCT00030100722.1 UniProtKB/TrEMBL
  ENSSSCT00035080645.1 UniProtKB/TrEMBL
  ENSSSCT00035080669.1 UniProtKB/TrEMBL
  ENSSSCT00035080674.1 UniProtKB/TrEMBL
  ENSSSCT00035080676.1 UniProtKB/TrEMBL
  ENSSSCT00035080686.1 UniProtKB/TrEMBL
  ENSSSCT00040057721.1 UniProtKB/TrEMBL
  ENSSSCT00040057939.1 UniProtKB/TrEMBL
  ENSSSCT00040058153.1 UniProtKB/TrEMBL
  ENSSSCT00040058407.1 UniProtKB/TrEMBL
  ENSSSCT00045032704.1 UniProtKB/TrEMBL
  ENSSSCT00045032916.1 UniProtKB/TrEMBL
  ENSSSCT00045033057.1 UniProtKB/TrEMBL
  ENSSSCT00045033253.1 UniProtKB/TrEMBL
  ENSSSCT00050100160.1 UniProtKB/TrEMBL
  ENSSSCT00050100172.1 UniProtKB/TrEMBL
  ENSSSCT00050100175.1 UniProtKB/TrEMBL
  ENSSSCT00050100195.1 UniProtKB/TrEMBL
  ENSSSCT00055059569.1 UniProtKB/TrEMBL
  ENSSSCT00055059609.1 UniProtKB/TrEMBL
  ENSSSCT00055059650.1 UniProtKB/TrEMBL
  ENSSSCT00055059686.1 UniProtKB/TrEMBL
  ENSSSCT00060100065.1 UniProtKB/TrEMBL
  ENSSSCT00060100232.1 UniProtKB/TrEMBL
  ENSSSCT00060100275.1 UniProtKB/TrEMBL
  ENSSSCT00060100313.1 UniProtKB/TrEMBL
  ENSSSCT00060100417.1 UniProtKB/TrEMBL
  ENSSSCT00070026632.1 UniProtKB/TrEMBL
  ENSSSCT00070026661.1 UniProtKB/TrEMBL
  ENSSSCT00070026682.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.290 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
InterPro CUB_dom UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
KEGG Report ssc:100622262 UniProtKB/TrEMBL
NCBI Gene SEZ6L2 ENTREZGENE
PANTHER PROTEIN CBR-CLEC-78 UniProtKB/TrEMBL
  SEIZURE 6-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
Superfamily-SCOP SSF49854 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A480TLM4_PIG UniProtKB/TrEMBL
  A0A4X1U052_PIG UniProtKB/TrEMBL
  A0A4X1U332_PIG UniProtKB/TrEMBL
  A0A4X1U353_PIG UniProtKB/TrEMBL
  A0A5G2Q9E6_PIG UniProtKB/TrEMBL
  A0A5G2QNX9_PIG UniProtKB/TrEMBL
  A0A8D1TPV2_PIG UniProtKB/TrEMBL
  A0A8D1WUJ8_PIG UniProtKB/TrEMBL
  I3LBX3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98312 ENTREZGENE