H1-5 (H1.5 linker histone, cluster member) - Rat Genome Database

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Gene: H1-5 (H1.5 linker histone, cluster member) Sus scrofa
Analyze
Symbol: H1-5
Name: H1.5 linker histone, cluster member
RGD ID: 14263653
Description: ENCODES a protein that exhibits chromatin DNA binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN chromatin organization (ortholog); establishment of protein localization to chromatin (ortholog); muscle organ development (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN chromatin (ortholog); heterochromatin (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H1.5; LOC110261661
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1721,621,863 - 21,622,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
H1-5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1721,621,863 - 21,622,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
H1-5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38627,866,792 - 27,867,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl627,866,792 - 27,867,588 (-)EnsemblGRCh38hg38GRCh38
GRCh37627,834,570 - 27,835,366 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36627,942,549 - 27,943,404 (-)NCBINCBI36Build 36hg18NCBI36
Build 34627,942,548 - 27,943,338NCBI
Celera629,440,606 - 29,441,461 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef627,642,254 - 27,643,043 (-)NCBIHuRef
CHM1_1627,836,746 - 27,837,535 (-)NCBICHM1_1
T2T-CHM13v2.0627,736,463 - 27,737,259 (-)NCBIT2T-CHM13v2.0
H1f5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,964,002 - 21,964,795 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,964,053 - 21,964,795 (-)EnsemblGRCm39 Ensembl
GRCm381321,779,832 - 21,780,625 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,779,883 - 21,780,625 (-)EnsemblGRCm38mm10GRCm38
MGSCv371321,871,752 - 21,872,423 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361321,787,348 - 21,788,019 (-)NCBIMGSCv36mm8
Celera1322,050,751 - 22,051,422 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.97NCBI
H1f5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,421,875 - 47,422,905 (+)NCBIGRCr8
mRatBN7.21742,726,132 - 42,727,162 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1742,726,127 - 42,769,160 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1744,775,821 - 44,776,489 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01749,534,913 - 49,535,581 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,025,883 - 44,026,551 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01744,766,313 - 44,766,981 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1744,766,313 - 44,766,981 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,699,738 - 58,700,406 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,360,616 - 50,361,284 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1753,734,625 - 53,735,293 (-)NCBICelera
Cytogenetic Map17p11NCBI
H1-5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546513,391,201 - 13,391,881 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546513,390,856 - 13,391,994 (+)NCBIChiLan1.0ChiLan1.0
H1-5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,510,439 - 42,511,119 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,511,446 - 38,512,242 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0627,697,071 - 27,697,949 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,368,652 - 28,372,137 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,371,430 - 28,372,110 (-)Ensemblpanpan1.1panPan2
H1-5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,045,883 - 25,046,775 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,046,023 - 25,046,703 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3524,901,373 - 24,902,210 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,234,318 - 25,235,941 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,235,215 - 25,235,895 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,009,364 - 25,010,914 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,062,515 - 25,064,067 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,526,424 - 26,528,052 (-)NCBIUU_Cfam_GSD_1.0
H1-5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946457,032 - 457,757 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366713,163,825 - 3,164,505 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366713,163,792 - 3,164,532 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H1-5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,663,976 - 44,664,753 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1744,664,042 - 44,664,719 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604427,552,570 - 27,553,519 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in H1-5
50 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021099835   ⟹   XP_020955494
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1721,621,863 - 21,622,646 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020955494 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00005000202.1
Reference Protein Sequences
RefSeq Acc Id: XP_020955494   ⟸   XM_021099835
- UniProtKB: A0A8D0HL93 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
H15


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00005000417 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00005000475.1 UniProtKB/TrEMBL
Gene3D-CATH Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain UniProtKB/TrEMBL
InterPro H1/H5 UniProtKB/TrEMBL
  Histone_H1/H5_H15 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene LOC110261661 ENTREZGENE
Pfam Linker_histone UniProtKB/TrEMBL
PRINTS HISTONEH5 UniProtKB/TrEMBL
PROSITE H15 UniProtKB/TrEMBL
SMART H15 UniProtKB/TrEMBL
Superfamily-SCOP Winged helix' DNA-binding domain UniProtKB/TrEMBL
UniProt A0A8D0HL93 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:109771 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-07-30 H1-5  H1.5 linker histone, cluster member  LOC110261661  histone H1.5  Symbol and/or name change 5135510 APPROVED