MS4A1 (membrane spanning 4-domains A1) - Rat Genome Database

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Gene: MS4A1 (membrane spanning 4-domains A1) Sus scrofa
Analyze
Symbol: MS4A1
Name: membrane spanning 4-domains A1
RGD ID: 14263293
Description: ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); INVOLVED IN response to bacterium (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); common variable immunodeficiency (ortholog); common variable immunodeficiency 5 (ortholog); FOUND IN cell surface (inferred); external side of plasma membrane (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B-lymphocyte antigen CD20; membrane-spanning 4-domains, subfamily A, member 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl211,215,901 - 11,222,914 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1211,216,238 - 11,229,060 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,774,975 - 10,787,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
MS4A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl211,215,901 - 11,222,914 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1211,216,238 - 11,229,060 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2210,774,975 - 10,787,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MS4A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,455,847 - 60,470,752 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,455,846 - 60,470,752 (+)EnsemblGRCh38hg38GRCh38
GRCh371160,223,320 - 60,238,225 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,979,858 - 59,994,801 (+)NCBINCBI36Build 36hg18NCBI36
Build 341159,979,864 - 59,993,129NCBI
Celera1157,587,550 - 57,602,493 (+)NCBICelera
Cytogenetic Map11q12.2NCBI
HuRef1156,569,727 - 56,584,670 (+)NCBIHuRef
CHM1_11160,089,320 - 60,104,266 (+)NCBICHM1_1
T2T-CHM13v2.01160,406,975 - 60,421,883 (+)NCBIT2T-CHM13v2.0
Ms4a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391911,227,043 - 11,243,513 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1911,227,039 - 11,243,605 (-)EnsemblGRCm39 Ensembl
GRCm381911,249,679 - 11,266,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1911,249,675 - 11,266,241 (-)EnsemblGRCm38mm10GRCm38
MGSCv371911,325,093 - 11,340,641 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361911,316,865 - 11,333,194 (-)NCBIMGSCv36mm8
Celera1911,933,232 - 11,941,389 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map198.19NCBI
Ms4a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81217,331,274 - 217,351,934 (-)NCBIGRCr8
mRatBN7.21207,906,370 - 207,927,028 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1207,906,374 - 207,918,512 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,281,228 - 216,293,400 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01223,345,173 - 223,357,355 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,035,633 - 216,047,806 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01227,429,241 - 227,441,492 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1227,429,596 - 227,441,442 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,494,128 - 234,506,370 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41213,763,696 - 213,770,756 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11213,921,879 - 213,934,027 (-)NCBI
Celera1205,381,782 - 205,388,842 (-)NCBICelera
Cytogenetic Map1q43NCBI
Ms4a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555115,258,341 - 5,267,113 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555115,252,934 - 5,263,961 (+)NCBIChiLan1.0ChiLan1.0
MS4A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2961,597,728 - 61,612,704 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11162,641,996 - 62,656,548 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,691,750 - 55,706,697 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11159,134,579 - 59,148,832 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1159,134,617 - 59,149,521 (+)Ensemblpanpan1.1panPan2
MS4A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12150,722,142 - 50,734,934 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2150,722,041 - 50,733,704 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2150,162,433 - 50,173,865 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02151,895,623 - 51,907,069 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2151,895,348 - 51,908,292 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12150,941,639 - 50,953,065 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02151,040,140 - 51,051,579 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02151,664,248 - 51,675,690 (+)NCBIUU_Cfam_GSD_1.0
Ms4a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494712,352,445 - 12,358,299 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365812,466,312 - 2,477,530 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365812,466,294 - 2,477,530 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MS4A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1113,343,647 - 13,358,639 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl113,345,253 - 13,358,547 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038110,684,697 - 110,700,399 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in MS4A1
506 total Variants

Expression


Sequence


RefSeq Acc Id: ENSSSCT00000023319   ⟹   ENSSSCP00000022264
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl211,215,901 - 11,222,914 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000100371   ⟹   ENSSSCP00000080062
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl211,215,901 - 11,222,914 (-)Ensembl
RefSeq Acc Id: NM_001243394   ⟹   NP_001230323
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1211,216,238 - 11,229,060 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001230323   ⟸   NM_001243394
- UniProtKB: A0A8D1EJN7 (UniProtKB/TrEMBL),   A0A8D0YCM1 (UniProtKB/TrEMBL),   A0A8D0RYP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000080062   ⟸   ENSSSCT00000100371
RefSeq Acc Id: ENSSSCP00000022264   ⟸   ENSSSCT00000023319


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021812 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005041658 UniProtKB/TrEMBL
  ENSSSCG00025034767 UniProtKB/TrEMBL
  ENSSSCG00030073968 UniProtKB/TrEMBL
  ENSSSCG00035063573 UniProtKB/TrEMBL
  ENSSSCG00040042042 UniProtKB/TrEMBL
  ENSSSCG00045029295 UniProtKB/TrEMBL
  ENSSSCG00050055267 UniProtKB/TrEMBL
  ENSSSCG00065031217 UniProtKB/TrEMBL
  ENSSSCG00070025476 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023319.3 UniProtKB/TrEMBL
  ENSSSCT00000100371 ENTREZGENE
  ENSSSCT00000100371.1 UniProtKB/TrEMBL
  ENSSSCT00005066995.1 UniProtKB/TrEMBL
  ENSSSCT00025047454.1 UniProtKB/TrEMBL
  ENSSSCT00025047527.1 UniProtKB/TrEMBL
  ENSSSCT00030103678.1 UniProtKB/TrEMBL
  ENSSSCT00030103691.1 UniProtKB/TrEMBL
  ENSSSCT00035085515.1 UniProtKB/TrEMBL
  ENSSSCT00035085527.1 UniProtKB/TrEMBL
  ENSSSCT00040056372.1 UniProtKB/TrEMBL
  ENSSSCT00040056509.1 UniProtKB/TrEMBL
  ENSSSCT00045050030.1 UniProtKB/TrEMBL
  ENSSSCT00045050134.1 UniProtKB/TrEMBL
  ENSSSCT00050075436.1 UniProtKB/TrEMBL
  ENSSSCT00050075447.1 UniProtKB/TrEMBL
  ENSSSCT00065042207.1 UniProtKB/TrEMBL
  ENSSSCT00065042212.1 UniProtKB/TrEMBL
  ENSSSCT00070050923.1 UniProtKB/TrEMBL
  ENSSSCT00070050925.1 UniProtKB/TrEMBL
InterPro CD20-like UniProtKB/TrEMBL
  MS4A UniProtKB/TrEMBL
KEGG Report ssc:100627952 UniProtKB/TrEMBL
NCBI Gene MS4A1 ENTREZGENE
PANTHER PTHR23320 UniProtKB/TrEMBL
  PTHR23320:SF79 UniProtKB/TrEMBL
Pfam CD20 UniProtKB/TrEMBL
UniProt A0A4X1VM07_PIG UniProtKB/TrEMBL
  A0A4X1VPQ6_PIG UniProtKB/TrEMBL
  A0A8D0RYP2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0YCM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ASR3_PIG UniProtKB/TrEMBL
  A0A8D1EJN7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FLH7_PIG UniProtKB/TrEMBL
  I3LDX9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:90406 ENTREZGENE