CCNB2 (cyclin B2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: CCNB2 (cyclin B2) Sus scrofa
Analyze
Symbol: CCNB2
Name: cyclin B2
RGD ID: 14262421
Description: INVOLVED IN negative regulation of meiotic cell cycle process involved in oocyte maturation; G2/MI transition of meiotic cell cycle (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Bloom syndrome (ortholog); colon cancer (ortholog); COVID-19 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); microtubule cytoskeleton (ortholog); INTERACTS WITH dibromine
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: G2/mitotic-specific cyclin-B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,907,047 - 112,942,219 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,907,047 - 112,942,218 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,906,568 - 124,942,517 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
dibromine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
CCNB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1112,907,047 - 112,942,219 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11112,907,047 - 112,942,218 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21124,906,568 - 124,942,517 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCNB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1559,105,126 - 59,125,045 (+)EnsemblGRCh38hg38GRCh38
GRCh381559,105,146 - 59,125,045 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371559,397,345 - 59,417,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361557,184,612 - 57,204,536 (+)NCBINCBI36hg18NCBI36
Build 341557,184,611 - 57,204,535NCBI
Celera1536,285,270 - 36,305,194 (+)NCBI
Cytogenetic Map15q22.2NCBI
HuRef1536,219,537 - 36,239,475 (+)NCBIHuRef
CHM1_11559,515,271 - 59,535,219 (+)NCBICHM1_1
Ccnb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39970,314,971 - 70,328,836 (-)NCBIGRCm39mm39
GRCm39 Ensembl970,314,974 - 70,328,829 (-)Ensembl
GRCm38970,407,689 - 70,421,554 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl970,407,692 - 70,421,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv37970,255,496 - 70,269,361 (-)NCBIGRCm37mm9NCBIm37
MGSCv36970,206,853 - 70,220,718 (-)NCBImm8
Celera967,623,704 - 67,637,672 (-)NCBICelera
Cytogenetic Map9DNCBI
Ccnb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2871,087,594 - 71,100,794 (-)NCBI
Rnor_6.0876,847,972 - 76,861,165 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0876,221,508 - 76,233,944 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4874,892,108 - 74,906,181 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1874,911,162 - 74,925,235 (-)NCBI
Celera870,627,900 - 70,641,100 (+)NCBICelera
Cytogenetic Map8q24NCBI
Ccnb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545015,559,022 - 15,581,760 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545015,558,874 - 15,587,456 (-)NCBIChiLan1.0ChiLan1.0
CCNB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11556,382,391 - 56,402,299 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1556,382,391 - 56,402,299 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01538,075,106 - 38,095,699 (+)NCBIMhudiblu_PPA_v0panPan3
CCNB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13024,040,859 - 24,063,084 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3024,040,859 - 24,063,084 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3024,014,627 - 24,036,855 (+)NCBI
ROS_Cfam_1.03024,209,364 - 24,231,601 (+)NCBI
UMICH_Zoey_3.13024,134,552 - 24,156,769 (+)NCBI
UNSW_CanFamBas_1.03024,217,551 - 24,239,776 (+)NCBI
UU_Cfam_GSD_1.03024,361,281 - 24,383,523 (+)NCBI
Ccnb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640102,368,542 - 102,390,483 (+)NCBI
SpeTri2.0NW_00493647120,216,435 - 20,238,543 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12624,389,654 - 24,408,976 (-)NCBI
ChlSab1.1 Ensembl2624,389,642 - 24,409,346 (-)Ensembl
Vero_WHO_p1.0NW_023666048116,914,038 - 116,933,832 (+)NCBI
Ccnb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478112,875,215 - 12,905,878 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 2 1
Low 8 1 1 3 1 5 2 3 2
Below cutoff 2 2 15

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005069   ⟹   ENSSSCP00000004945
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1112,907,048 - 112,942,219 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071864   ⟹   ENSSSCP00000065409
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1112,907,047 - 112,942,072 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000076674   ⟹   ENSSSCP00000066571
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1112,907,048 - 112,939,577 (-)Ensembl
RefSeq Acc Id: NM_001114282   ⟹   NP_001107754
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11112,907,753 - 112,942,072 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021082593   ⟹   XP_020938252
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11112,907,047 - 112,942,218 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001107754 (Get FASTA)   NCBI Sequence Viewer  
  XP_020938252 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAF98889 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020938252   ⟸   XM_021082593
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001107754   ⟸   NM_001114282
- UniProtKB: A9ZPH4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000004945   ⟸   ENSSSCT00000005069
RefSeq Acc Id: ENSSSCP00000066571   ⟸   ENSSSCT00000076674
RefSeq Acc Id: ENSSSCP00000065409   ⟸   ENSSSCT00000071864
Protein Domains
Cyclin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004588 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070010907 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000004945 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000065409 UniProtKB/TrEMBL
  ENSSSCP00000066571 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00070017505 UniProtKB/TrEMBL
  ENSSSCP00070017508 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005069 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000071864 UniProtKB/TrEMBL
  ENSSSCT00000076674 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00070021175 UniProtKB/TrEMBL
  ENSSSCT00070021182 UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
KEGG Report ssc:100135668 UniProtKB/TrEMBL
NCBI Gene CCNB2 ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
PIRSF Cyclin_A_B_D_E UniProtKB/TrEMBL
PROSITE CYCLINS UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt A0A4X1TQD2_PIG UniProtKB/TrEMBL
  A0A4X1TQL0_PIG UniProtKB/TrEMBL
  A0A5G2QKP9_PIG UniProtKB/TrEMBL
  A0A5G2R7J4_PIG UniProtKB/TrEMBL
  A9ZPH4 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1S054 UniProtKB/TrEMBL
VGNC ID VGNC:86350 ENTREZGENE