FAM20C (FAM20C golgi associated secretory pathway kinase) - Rat Genome Database

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Gene: FAM20C (FAM20C golgi associated secretory pathway kinase) Sus scrofa
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Symbol: FAM20C
Name: FAM20C golgi associated secretory pathway kinase
RGD ID: 14262154
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN dentinogenesis (ortholog); enamel mineralization (ortholog); odontoblast differentiation (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: extracellular serine/threonine protein kinase FAM20C
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3163,421 - 200,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13159,107 - 200,462 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2389,974 - 94,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FAM20C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3163,421 - 200,459 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13159,107 - 200,462 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2389,974 - 94,208 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM20C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387192,571 - 260,772 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7192,571 - 260,772 (+)EnsemblGRCh38hg38GRCh38
GRCh377192,571 - 300,738 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367288,052 - 304,059 (+)NCBINCBI36Build 36hg18NCBI36
Build 347288,195 - 304,059NCBI
Celera7211,215 - 273,622 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef7203,619 - 219,084 (+)NCBIHuRef
HuRef7155,848 - 180,386 (+)NCBIHuRef
CHM1_17192,335 - 299,664 (+)NCBICHM1_1
T2T-CHM13v2.07293,238 - 360,993 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27303,573 - 364,808 (+)NCBI
Fam20c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395138,740,836 - 138,795,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5138,740,269 - 138,795,832 (+)EnsemblGRCm39 Ensembl
GRCm385138,755,081 - 138,810,063 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5138,754,514 - 138,810,077 (+)EnsemblGRCm38mm10GRCm38
MGSCv375139,231,035 - 139,286,017 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365139,008,742 - 139,063,705 (+)NCBIMGSCv36mm8
Celera5135,807,755 - 135,865,362 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map577.19NCBI
Fam20c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81220,940,654 - 20,999,072 (-)NCBIGRCr8
mRatBN7.21215,826,864 - 15,885,423 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1215,826,871 - 15,884,543 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1216,638,165 - 16,695,811 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,261,890 - 17,319,536 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01216,284,652 - 16,341,671 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01217,913,771 - 17,972,733 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1217,913,767 - 17,972,737 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01219,906,233 - 19,965,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41216,340,407 - 16,399,325 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11216,371,029 - 16,473,541 (-)NCBI
Celera1217,578,522 - 17,635,987 (-)NCBICelera
Cytogenetic Map12q11NCBI
Fam20c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554608,143,824 - 8,193,825 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554608,142,325 - 8,192,044 (+)NCBIChiLan1.0ChiLan1.0
FAM20C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v265,096,988 - 5,181,447 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1753,421,707 - 53,506,134 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07311,468 - 394,623 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17575,633 - 635,643 (+)NCBIpanpan1.1PanPan1.1panPan2
FAM20C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1616,448,603 - 16,497,064 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl616,448,588 - 16,497,752 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha617,920,483 - 17,969,286 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0616,577,996 - 16,626,815 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl616,578,012 - 16,628,609 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1616,380,418 - 16,429,206 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0616,306,905 - 16,355,670 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0616,596,937 - 16,645,742 (-)NCBIUU_Cfam_GSD_1.0
Fam20c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344144,360,748 - 144,413,468 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936754596,872 - 653,098 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936754596,878 - 649,585 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103246914
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12821,299,235 - 21,371,603 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2821,299,213 - 21,371,577 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666090190,813 - 259,923 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam20c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474025,984,091 - 26,032,649 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474025,984,642 - 26,032,089 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM20C
1252 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 8 3 3 4 2 23 2 3 3
Below cutoff 2 1 1

Sequence


RefSeq Acc Id: ENSSSCT00000029086   ⟹   ENSSSCP00000027639
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl3163,421 - 200,459 (+)Ensembl
RefSeq Acc Id: XM_021085922   ⟹   XP_020941581
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.13159,107 - 200,462 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020941581   ⟸   XM_021085922
- UniProtKB: A0A4X1TE36 (UniProtKB/TrEMBL),   I3LU40 (UniProtKB/TrEMBL),   A0A8D1PP37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000027639   ⟸   ENSSSCT00000029086
Protein Domains
FAM20 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000020813 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015057792 UniProtKB/TrEMBL
  ENSSSCG00025003278 UniProtKB/TrEMBL
  ENSSSCG00030060122 UniProtKB/TrEMBL
  ENSSSCG00035044493 UniProtKB/TrEMBL
  ENSSSCG00040021305 UniProtKB/TrEMBL
  ENSSSCG00045011409 UniProtKB/TrEMBL
  ENSSSCG00050014425 UniProtKB/TrEMBL
  ENSSSCG00055006156 UniProtKB/TrEMBL
  ENSSSCG00060007384 UniProtKB/TrEMBL
  ENSSSCG00065055100 UniProtKB/TrEMBL
  ENSSSCG00070008412 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000029086 ENTREZGENE
  ENSSSCT00000029086.4 UniProtKB/TrEMBL
  ENSSSCT00015077095.1 UniProtKB/TrEMBL
  ENSSSCT00025004310.1 UniProtKB/TrEMBL
  ENSSSCT00030083915.1 UniProtKB/TrEMBL
  ENSSSCT00035059101.1 UniProtKB/TrEMBL
  ENSSSCT00040028634.1 UniProtKB/TrEMBL
  ENSSSCT00045019349.1 UniProtKB/TrEMBL
  ENSSSCT00050019486.1 UniProtKB/TrEMBL
  ENSSSCT00055011927.1 UniProtKB/TrEMBL
  ENSSSCT00060009409.1 UniProtKB/TrEMBL
  ENSSSCT00065075440.1 UniProtKB/TrEMBL
  ENSSSCT00070016247.1 UniProtKB/TrEMBL
InterPro FAM20 UniProtKB/TrEMBL
  FAM20_C UniProtKB/TrEMBL
NCBI Gene FAM20C ENTREZGENE
PANTHER EXTRACELLULAR SERINE/THREONINE PROTEIN KINASE FAM20C UniProtKB/TrEMBL
  PTHR12450 UniProtKB/TrEMBL
Pfam Fam20C UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A4X1TE36 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PP37 ENTREZGENE, UniProtKB/TrEMBL
  I3LU40 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87951 ENTREZGENE