GMNC (geminin coiled-coil domain containing) - Rat Genome Database

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Gene: GMNC (geminin coiled-coil domain containing) Sus scrofa
Analyze
Symbol: GMNC
Name: geminin coiled-coil domain containing
RGD ID: 14260691
Description: INVOLVED IN cilium assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); schizophrenia (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: geminin coiled-coil domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13128,239,514 - 128,250,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113128,239,507 - 128,251,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213137,622,779 - 137,631,350 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
GMNC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13128,239,514 - 128,250,707 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113128,239,507 - 128,251,579 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213137,622,779 - 137,631,350 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GMNC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383190,843,271 - 190,862,694 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3190,852,737 - 190,892,429 (-)EnsemblGRCh38hg38GRCh38
GRCh373190,570,526 - 190,580,483 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363192,055,778 - 192,063,645 (-)NCBINCBI36Build 36hg18NCBI36
Celera3189,000,690 - 189,010,629 (-)NCBICelera
Cytogenetic Map3q28NCBI
HuRef3187,970,135 - 187,980,075 (-)NCBIHuRef
CHM1_13190,534,027 - 190,544,004 (-)NCBICHM1_1
T2T-CHM13v2.03193,659,602 - 193,679,021 (-)NCBIT2T-CHM13v2.0
Gmnc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391626,775,985 - 26,810,424 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1626,732,303 - 26,810,402 (-)EnsemblGRCm39 Ensembl
GRCm381626,957,235 - 26,991,675 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1626,913,553 - 26,991,652 (-)EnsemblGRCm38mm10GRCm38
MGSCv371626,957,321 - 26,990,060 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361626,872,468 - 26,905,207 (-)NCBIMGSCv36mm8
Celera1627,499,106 - 27,531,851 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1618.56NCBI
Gmnc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81187,339,617 - 87,352,149 (+)NCBIGRCr8
mRatBN7.21173,836,255 - 73,847,698 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1173,814,533 - 73,847,328 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01177,237,033 - 77,247,723 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1177,239,098 - 77,246,315 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01183,470,179 - 83,480,811 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41175,823,385 - 75,835,294 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1172,764,269 - 72,774,991 (+)NCBICelera
Cytogenetic Map11q22NCBI
Gmnc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542017,281,684 - 17,298,001 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542017,286,789 - 17,297,574 (+)NCBIChiLan1.0ChiLan1.0
GMNC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22188,719,559 - 188,728,331 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13188,724,276 - 188,733,048 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03187,876,545 - 187,931,929 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13196,427,562 - 196,437,385 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3196,426,618 - 196,540,248 (-)Ensemblpanpan1.1panPan2
GMNC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13422,790,364 - 22,800,569 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3422,790,972 - 22,800,852 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3426,884,181 - 26,894,407 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03422,723,660 - 22,733,090 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3422,725,664 - 22,734,744 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13422,746,583 - 22,756,935 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03422,732,689 - 22,743,044 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03422,975,152 - 22,983,061 (-)NCBIUU_Cfam_GSD_1.0
Gmnc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602120,613,222 - 120,650,593 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493690076,581 - 83,550 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103241908
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11585,060,719 - 85,070,285 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1585,061,562 - 85,067,339 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604158,682,333 - 58,700,120 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gmnc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473066,288,351 - 66,319,136 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473066,312,153 - 66,322,508 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GMNC
285 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

musculoskeletal system nervous system renal system reproductive system
High
Medium
Low 1 5 1 1
Below cutoff 1 9 1

Sequence


RefSeq Acc Id: ENSSSCT00000031033   ⟹   ENSSSCP00000025791
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13128,239,514 - 128,250,707 (-)Ensembl
RefSeq Acc Id: XM_005670072   ⟹   XP_005670129
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113128,239,507 - 128,251,579 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005670129   ⟸   XM_005670072
- UniProtKB: I3LNW6 (UniProtKB/TrEMBL),   A0A4X1UC27 (UniProtKB/TrEMBL),   A0A8D1C6N0 (UniProtKB/TrEMBL),   A0A8D1VA23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000025791   ⟸   ENSSSCT00000031033


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000024420 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005042242 UniProtKB/TrEMBL
  ENSSSCG00015056126 UniProtKB/TrEMBL
  ENSSSCG00025001833 UniProtKB/TrEMBL
  ENSSSCG00030034803 UniProtKB/TrEMBL
  ENSSSCG00035030195 UniProtKB/TrEMBL
  ENSSSCG00040001055 UniProtKB/TrEMBL
  ENSSSCG00045001013 UniProtKB/TrEMBL
  ENSSSCG00050062191 UniProtKB/TrEMBL
  ENSSSCG00055008356 UniProtKB/TrEMBL
  ENSSSCG00060035890 UniProtKB/TrEMBL
  ENSSSCG00065074025 UniProtKB/TrEMBL
  ENSSSCG00070015637 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031033 ENTREZGENE
  ENSSSCT00000031033.3 UniProtKB/TrEMBL
  ENSSSCT00005067755.1 UniProtKB/TrEMBL
  ENSSSCT00015074771.1 UniProtKB/TrEMBL
  ENSSSCT00025002327.1 UniProtKB/TrEMBL
  ENSSSCT00030048181.1 UniProtKB/TrEMBL
  ENSSSCT00035040014.1 UniProtKB/TrEMBL
  ENSSSCT00040001223.1 UniProtKB/TrEMBL
  ENSSSCT00045001497.1 UniProtKB/TrEMBL
  ENSSSCT00050084724.1 UniProtKB/TrEMBL
  ENSSSCT00055016313.1 UniProtKB/TrEMBL
  ENSSSCT00060048632.1 UniProtKB/TrEMBL
  ENSSSCT00065101936.1 UniProtKB/TrEMBL
  ENSSSCT00070030685.1 UniProtKB/TrEMBL
KEGG Report ssc:100521153 UniProtKB/TrEMBL
NCBI Gene GMNC ENTREZGENE
PANTHER GEMININ UniProtKB/TrEMBL
  PTHR13372:SF2 UniProtKB/TrEMBL
UniProt A0A4X1UC27 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1C6N0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1VA23 ENTREZGENE, UniProtKB/TrEMBL
  I3LNW6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88512 ENTREZGENE