RCSD1 (RCSD domain containing 1) - Rat Genome Database

Name: RCSD1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: RCSD1 (RCSD domain containing 1) Sus scrofa

Analyze

Symbol:

RCSD1

Name:

RCSD domain containing 1

RGD ID:

14260611

Description:

ENCODES a protein that exhibits actin filament binding (inferred); INVOLVED IN cellular hyperosmotic response (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN cytosol (inferred)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

capZ-interacting protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RCSD1 (RCSD domain containing 1)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RCSD1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RCSD1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RCSD1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rcsd1 (RCSD domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	83,324,187 - 83,404,102 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	83,322,175 - 83,404,102 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	90,999,951 - 91,088,740 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

immunodeficiency 25 (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular hyperosmotic response (IEA)

protein localization to endosome (IBA)

retrograde transport, endosome to Golgi (IBA)

skeletal muscle contraction (IBA)

Cellular Component

cytosol (IEA)

early endosome (IBA)

WASH complex (IBA)

Molecular Function

actin filament binding (IBA,IEA)

phosphatidylinositol phosphate binding (IBA)

retromer complex binding (IBA)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:17407547	PMID:30032202

Genomics

Comparative Map Data

RCSD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	83,324,187 - 83,404,102 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	83,322,175 - 83,404,102 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	90,999,951 - 91,088,740 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RCSD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	167,630,232 - 167,708,696 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	167,630,093 - 167,708,696 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	167,599,469 - 167,677,933 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	165,865,954 - 165,942,110 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	140,708,754 - 140,784,746 (+)	NCBI		Celera
Cytogenetic Map	1	q24.2	NCBI
HuRef	1	138,845,527 - 138,921,574 (+)	NCBI		HuRef
CHM1_1	1	169,021,745 - 169,097,714 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	166,981,734 - 167,060,191 (+)	NCBI		T2T-CHM13v2.0

Rcsd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	165,476,503 - 165,537,632 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	165,474,085 - 165,537,326 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	165,648,945 - 165,710,063 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	165,646,516 - 165,709,757 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	167,579,076 - 167,638,225 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	167,485,620 - 167,544,769 (-)	NCBI		MGSCv36	mm8
Celera	1	168,093,649 - 168,153,153 (-)	NCBI		Celera
Cytogenetic Map	1	H2.3	NCBI
cM Map	1	72.99	NCBI

Rcsd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	80,434,878 - 80,497,312 (-)	NCBI		GRCr8
mRatBN7.2	13	77,901,898 - 77,964,309 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	77,901,898 - 77,966,228 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	80,520,129 - 80,582,534 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	81,824,121 - 81,886,529 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	79,071,128 - 79,133,577 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	83,854,650 - 83,917,040 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	83,854,664 - 83,917,021 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	88,734,809 - 88,797,190 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	81,370,795 - 81,387,656 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	81,384,961 - 81,401,846 (-)	NCBI
Celera	13	77,614,795 - 77,676,707 (-)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

Rcsd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	9,318,218 - 9,384,637 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955462	9,321,624 - 9,383,962 (-)	NCBI	ChiLan1.0	ChiLan1.0

RCSD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	82,057,694 - 82,133,640 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	81,726,228 - 81,802,214 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	143,062,602 - 143,138,987 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	146,895,246 - 146,921,977 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	146,899,485 - 146,921,977 (+)	Ensembl	panpan1.1		panPan2

RCSD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	30,756,524 - 30,852,309 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	30,756,645 - 30,852,818 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	30,291,890 - 30,363,980 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	30,573,456 - 30,645,719 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	30,574,560 - 30,670,802 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	30,413,478 - 30,485,522 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	30,444,773 - 30,541,796 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	30,683,174 - 30,780,128 (-)	NCBI		UU_Cfam_GSD_1.0

Rcsd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	100,548,850 - 100,600,630 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	18,395,281 - 18,447,386 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	18,395,577 - 18,447,323 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RCSD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	61,325,591 - 61,401,287 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	61,327,144 - 61,400,754 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	63,049,339 - 63,125,421 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rcsd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	5,729,704 - 5,744,327 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624826	5,673,114 - 5,745,948 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RCSD1
2052 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	2	2		5	2				3
Low	8	2	3			23	2	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001244462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021088515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK234500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK350724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK351181	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK397942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BW972233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN154230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN156337	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU151848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU462923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV876077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV911375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EW368370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01021176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000006912 ⟹ ENSSSCP00000006724

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	83,333,887 - 83,348,389 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000045228 ⟹ ENSSSCP00000034518

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	83,324,187 - 83,404,102 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000079659 ⟹ ENSSSCP00000072274

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	83,330,962 - 83,400,949 (-)	Ensembl

RefSeq Acc Id:

ENSSSCT00000087342 ⟹ ENSSSCP00000073407

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	83,333,887 - 83,404,102 (-)	Ensembl

RefSeq Acc Id:

NM_001244462 ⟹ NP_001231391

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	83,324,186 - 83,404,102 (-)	NCBI

Sequence:

show sequence

TCCCACTGGAGACCTACCTATGGAAAAAGTCTCTACCCTTGATTTAAAGGCAGAGATCCTATTA
ATTTGCTTCGTTCATTCACTATTTATTGAAGGCCTGGAGCTGCTCATGCTCAGGACCAGGGCAG
ACGGGGCAGTCCCGCAGCCAGCGAGCCGGGCGCGCCGCCGCCCACTTGCGCTGTGCCCGCCGCA
GCCGAACCCGGCCCGGGCGGGAGCCGAGCGGAGAGCGAGGATCGCGAGCCCAGGCCCGAGTGAG
CGCGCTCGGCCGCCGCCGAGTCGGCACCTGGAGGACATGGAGGAAAGGCCAGCAGAGACCAACG
CCAATGTGGACGACTCGGCGCTCCCCTCGGTGGCCCAGCTGGCTGGGCGGTTTAGGGAACAGGC
AGCCGCTGCAAAGGAGACACCAGCCAGTAGACCAACAAGAAGGAAACCACCCTGCTCCCTCTCT
CTGTTCCCCCCCAAGGTAGAGCTGGGCCAGAATGGTGAGGAGAAGTCACCACCCACTGCAAACC
ACCCTCCTAAAATGAAGGTGAAGAGCTCGCCTCTGATTGAGAAGCTTCAGGCCAATTTAGCCTT
TGATCCAGCTGCCCTGCTGCCTGGGGCATCACCCAAGAGTCCTGGTCTTAAGGCCATGGTGTCA
CCATTTCACAGCCCACCTTCTACCCCCAGCAGCCCTGGCGTGCGCTCTCGGGCCAGTGAGCCTG
AGGAACCACCCGTCAGCTTCGACCAGCCTCCTGAAGGCAGCCATCTGCCCTGTTACAACAAGGT
GCGGACGAGGGGCTCCATTAAAAGGCGCCCTCCCTCCAGGCGATTCCGAAGGTCCCAGTCGGAC
TGTGGGGACCTGGGGGACTTCAGGGCAGTGGAGTCCTCCCAGGAGAATGGTGCCAAGGAAGAAA
ACGGGGATGAGGTGTTCCCAGCCAAGGGCAAGGCCCCAGGATCCCCTCCTCAGAGCCGGATGTC
CAGCAGGACAGAGAAGCCAGAGGAGAAGGGCAGGGCGGCAGAGAAAGCCCAGCAGCCCGAGAAG
GCCATGGGGAACTCCGAGGAGGGGGCAGGCCAGCGTCCAGCCCAAGCCTCCAGCCCAGAAAGAG
AGGATGCAAGTGGGAGTCCCACGGAGGAGAAACCAGCTGGAGGGCAGACGGAAGAGCCCTCAGA
GGTGAAGGAGAAGGCGGCAAGTGGAGAGGAGGAGCCCGGACAGAGGGGCCCAGACACAAAGGGG
CCGGAGGAGGGAGCTGGGGCAGAGGAGACTCCGAAGAAGAGTCTCCCTGGAGAAGTGGAGGGGG
GCCACAGCTCAGAGCAGGAGACCAGCATGGAAAAGCAAGATGAGGGGACCGGCCTTGAGCCAGG
CTGCAACCCTGGCACCAGCCATACCCAGCCGGACACCAGCAGTGAGGTTCTCAAGACAGAGGAT
AACACCCCTGTCCAGGAAATTAAAATGTGAAGAAGAGCATATGGTGCCTCGTGATGAAGCTGCT
GCTCGAGCCATCCCTTTGGAAGTAGCTGCAATGATAGGAGCAGCAGCACAGGAAGCCATCGCAG
AAGCGGACTGGGCTGAGGGTCTGGAGTTAGCCTGAAGACAGGTTGCAGTTTCCCGACCTCCACA
CCATCACCAGCTGAGACTGGATCTGAGGGCAGCAGGCTTTTATCAATCAGCTTGAGTTTGTGTC
ACTTGATGGAACGTGGTTTAAAAAAAAAAAAAAAGTATTTAAAACAATGTGCAGTGGTGCCAAC
TCCCCAGGGATACTGGTCCACCTGTGGAGCCCAGACACTGCCCACACCCACCTATCTCTATCGC
TGACCTCAGAACGGGACTAGGATTGAGCTGATCTGATTTGTTTTGCATAAAAGGACAGCCTTTT
TACTGTTCTAAAGTTTTCACAGTCCTCAAATGTAAGTAAAAACTCATTTCAGGTGGCTAGAAAC
AAGAGTATCGCTGGAAATAGAAACCCTGTAAGTTATGGAAGAGCGTAAGAAATCCTGTAAATTA
CGAGACAGCCTTTCAGCTCTGTCCAAATTTAAACCGGCCAATGGATTTTGAAAACATTGCACTA
AAAGAGGTAATTATTGAAACATTAAAAAATATGTGTCCGTTCCAGCAGCAGGAGCTTTTCCCCT
CTGCCTGGTAGTTCCTTAGTTGATGATATGCTGGGAGGTAAGCAGCTCTGCTCACTGGCTGAGG
AGGAGGAGGCAGGGAGCAGCTCCTTTGGAGAGGCAGAGTGTCAGGTTTCAGGCTACATTTCCTC
CTCCTGAAAGCAGCAGAGCACGACAACCTGAGCAATGCCTGCCCTCTGCTTTATCCTGGGGGAA
GGAAGCTTGCCCTTCCAGAAGGGGGCCCTCAAGCATGGATTAGGTACCTCTTGGGAGGTGCTTT
GAGCATCGTGATGTGCAAGGTACATAATGAGACCGTCCTTCCTGGCTTTCCCCACTTGAGTGGA
AACCCAGCCTCTCCTCCTGGACTCGGGAGGGGTGGGATAGCTCTTGCTTTAAGGGTTCTATTTG
CAGAATGCAGGAGATTCATCAGCAACCCTTTTCCGGACATAGCTGCTCCCCTCTTCACCCACTT
CTGCTGAAAGATGCTCATCCAAAACATATTTAATTTTTGGAGATGGTCCTTACTCAGATTTGAG
TATTTCAGTGTCTCAACATGCTGATTTGGTGAGTGGAGCAGTCGTTTTTCTGAAGGTCTCTTAG
ACCACACTCTACTCTGACTTCAGAAAGTAGCCTCTCAGACTCAAAGCTGAAAGATGCTCATCCA
AAACATATTTAATTTTTAGAGATGGTCCTTACTCAGATTTGAGTATTTCAGTGTTTCAACATGC
TGATTTGGTGGGTGAAGCAGTCATTTTTTCGAAGGTCTCTTAGACCACACTCTACTCTGACTTC
AGAAAGTAGCCTCTCAGACTCAAAGGCCTTATCTCACCGCTGGTACCTCAATTTATCACCCTAT
TTACAGTTTTTCTAACTCCAGGATAGTGTTAATGTTTGGGATATATTTTTCCAAAAACTATTTT
TAAATCGAATGCAGCTTCTAAAACTTGTAATCTAGTGAAGACTGATACTGTAATAAGCTTTGTA
TTTTTGCAGAGTTTTTGGGAGACGTGTGTTTCAGTTATTTTAAGATCCAGACCGTATCAATCAT
CTGTCTATTGACAGAGGTGTATACCCCCTAAACAATACATGGATTTATTTATATATGTCTTTGG
ATTGTTTATATATTCATGCACATATCTGGGCAAGAGTTTTGTGAATCTGAGCATGTCTGTGGGT
GTGTGTGGTGAAAGGGGAACGTTGCCACTTTCCCTTACTAGAAAATGGAAAGGAACAGATGGGA
TGTAGATGTAAAAATAAAACTCTTTTTCTTCTGGAAAAAA

hide sequence

RefSeq Acc Id:

XM_021088513 ⟹ XP_020944172

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	83,322,175 - 83,400,350 (-)	NCBI

Sequence:

show sequence

CTCAGGACCAGGGCAGACGGGGCAGTCCCGCAGCCAGCGAGCCGGGCGCGCCGCCGCCCACTTG
CGCTGTGCCCGCCGCAGCCGAACCCGGCCCGGGCGGGAGCCGAGCGGAGAGCGAGGATCGCGAG
CCCAGGCCCGAGTGAGCGCGCTCGGCCGCCGCCGAGTCGGCACCTGGAGGACATGGAGGAAAGG
CCAGCAGAGACCAACGCCAATGTGGACGACTCGGCGCTCCCCTCGGTGGCCCAGCTGGCTGGGC
GGTTTAGGGAACAGGCAGCCGCTGCAAAGGAGAAGTCACCACCCACTGCAAACCACCCTCCTAA
AATGAAGGTGAAGAGCTCGCCTCTGATTGAGAAGCTTCAGGCCAATTTAGCCTTTGATCCAGCT
GCCCTGCTGCCTGGGGCATCACCCAAGAGTCCTGGTCTTAAGGCCATGGTGTCACCATTTCACA
GCCCACCTTCTACCCCCAGCAGCCCTGGCGTGCGCTCTCGGGCCAGTGAGCCTGAGGAACCACC
CGTCAGCTTCGACCAGCCTCCTGAAGGCAGCCATCTGCCCTGTTACAACAAGGTGCGGACGAGG
GGCTCCATTAAAAGGCGCCCTCCCTCCAGGCGATTCCGAAGGTCCCAGTCGGACTGTGGGGACC
TGGGGGACTTCAGGGCAGTGGAGTCCTCCCAGGAGAATGGTGCCAAGGAAGAAAACGGGGATGA
GGTGTTCCCAGCCAAGGGCAAGGCCCCAGGATCCCCTCCTCAGAGCCGGATGTCCAGCAGGACA
GAGAAGCCAGAGGAGAAGGGCAGGGCGGCAGAGAAAGCCCAGCAGCCCGAGAAGGCCATGGGGA
ACTCCGAGGAGGGGGCAGGCCAGCGTCCAGCCCAAGCCTCCAGCCCAGAAAGAGAGGATGCAAG
TGGGAGTCCCACGGAGGAGAAACCAGCTGGAGGGCAGACGGAAGAGCCCTCAGAGGTGAAGGAG
AAGGCGGCAAGTGGAGAGGAGGAGCCCGGACAGAGGGGCCCAGACACAAAGGGGCCGGAGGAGG
GAGCTGGGGCAGAGGAGACTCCGAAGAAGAGTCTCCCTGGAGAAGTGGAGGGGGGCCACAGCTC
AGAGCAGGAGACCAGCATGGAAAAGCAAGATGAGGGGACCGGCCTTGAGCCAGGCTGCAACCCT
GGCACCAGCCATACCCAGCCGGACACCAGCAGTGAGGTTCTCAAGACAGAGGATAACACCCCTG
TCCAGGAAATTAAAATGTGAAGAAGAGCATATGGTGCCTCGTGATGAAGCTGCTGCTCGAGCCA
TCCCTTTGGAAGTAGCTGCAATGATAGGAGCAGCAGCACAGGAAGCCATCGCAGAAGCGGACTG
GGCTGAGGGTCTGGAGTTAGCCTGAAGACAGGTTGCAGTTTCCCGACCTCCACACCATCACCAG
CTGAGACTGGATCTGAGGGCAGCAGGCTTTTATCAATCAGCTTGAGTTTGTGTCACTTGATGGA
ACGTGGTTTAAAAAAAAAAAAAAAGTATTTAAAACAATGTGCAGTGGTGCCAACTCCCCAGGGA
TACTGGTCCACCTGTGGAGCCCAGACACTGCCCACACCCACCTATCTCTATCGCTGACCTCAGA
ACGGGACTAGGATTGAGCTGATCTGATTTGTTTTGCATAAAAGGACAGCCTTTTTACTGTTCTA
AAGTTTTCACAGTCCTCAAATGTAAGTAAAAACTCATTTCAGGTGGCTAGAAACAAGAGTATCG
CTGGAAATAGAAACCCTGTAAGTTATGGAAGAGCGTAAGAAATCCTGTAAATTACGAGACAGCC
TTTCAGCTCTGTCCAAATTTAAACCGGCCAATGGATTTTGAAAACATTGCACTAAAAGAGGTAA
TTATTGAAACATTAAAAAATATGTGTCCGTTCCAGCAGCAGGAGCTTTTCCCCTCTGCCTGGTA
GTTCCTTAGTTGATGATATGCTGGGAGGTAAGCAGCTCTGCTCACTGGCTGAGGAGGAGGAGGC
AGGGAGCAGCTCCTTTGGAGAGGCAGAGTGTCAGGTTTCAGGCTACATTTCCTCCTCCTGAAAG
CAGCAGAGCACGACAACCTGAGCAATGCCTGCCCTCTGCTTTATCCTGGGGGAAGGAAGCTTGC
CCTTCCAGAAGGGGGCCCTCAAGCATGGATTAGGTACCTCTTGGGAGGTGCTTTGAGCATCGTG
ATGTGCAAGGTACATAATGAGACCGTCCTTCCTGGCTTTCCCCACTTGAGTGGAAACCCAGCCT
CTCCTCCTGGACTCGGGAGGGGTGGGATAGCTCTTGCTTTAAGGGTTCTATTTGCAGAATGCAG
GAGATTCATCAGCAACCCTTTTCCGGACATAGCTGCTCCCCTCTTCACCCACTTCTGCTGAAAG
ATGCTCATCCAAAACATATTTAATTTTTGGAGATGGTCCTTACTCAGATTTGAGTATTTCAGTG
TCTCAACATGCTGATTTGGTGAGTGGAGCAGTCGTTTTTCTGAAGGTCTCTTAGACCACACTCT
ACTCTGACTTCAGAAAGTAGCCTCTCAGACTCAAAGCTGAAAGATGCTCATCCAAAACATATTT
AATTTTTAGAGATGGTCCTTACTCAGATTTGAGTATTTCAGTGTTTCAACATGCTGATTTGGTG
GGTGAAGCAGTCATTTTTTCGAAGGTCTCTTAGACCACACTCTACTCTGACTTCAGAAAGTAGC
CTCTCAGACTCAAAGGCCTTATCTCACCGCTGGTACCTCAATTTATCACCCTATTTACAGTTTT
TCTAACTCCAGGATAGTGTTAATGTTTGGGATATATTTTTCCAAAAACTATTTTTAAATCGAAT
GCAGCTTCTAAAACTTGTAATCTAGTGAAGACTGATACTGTAATAAGCTTTGTATTTTTGCAGA
GTTTTTGGGAGACGTGTGTTTCAGTTATTTTAAGATCCAGACCGTATCAATCATCTGTCTATTG
ACAGAGGTGTATACCCCCTAAACAATACATGGATTTATTTATATATGTCTTTGGATTGTTTATA
TATTCATGCACATATCTGGGCAAGAGTTTTGTGAATCTGAGCATGTCTGTGGGTGTGTGTGGTG
AAAGGGGAACGTTGCCACTTTCCCTTACTAGAAAATGGAAAGGAACAGATGGGATGTAGATGTA
AAAATAAAACTCTTTTTCTTCTGGAGGGTCCATGTCTTACAGTAGCAGATGAAGAAGCAATGAG
AAATGACAAGAATGTGACGCTGAAGGAGCATTCATGATGGGGTCAAAAGTCTCCCCAGTTCCCT
GTTAGTGACATTATTGACCAACAAACACAGAGGCCCCATCCTCAGATTTTATTGGTGATGGGGG
CTCTTGGTGGGGAATTTGAGAAGCTTGAAGCTCAGGCAGGACCCTGAGCTTCCCTGTTGGTGCT
GCAGCCTTGCTGTTTACTGCTCTCCTTTCTGGGCATGTTGCATCCCATGGGTGAGACTGGAATT
TCAAATTTGGAGTAAAGAAATCTATTTATGTCTTAGGTGGTACAGAGTCATTTACGTGGTACAG
AGTCATCGCCAGGCCAGGAAAGCTTTCATTTAGGCTTCCTTAAGAGGCTTGAAGGAAAACACTG
ATGCTTCACAGGGACAAGGCTAAAGAGAAGTGTCAGAATCATTCTTCCACTGCCTTTGCAGTCT
CCCTTGAATTTTTTAATTTATTTTTGGTCTTTTTTTTTGTCTTTTTAGGGCCCCACCTGTGCAT
ATGGAGGTTCCCAGGCTAGGGGTCGAATCAGAGCTACAGCTTCTGGCCTACACCAGAGCCACAG
CAATGCCAGATCTGAGCCACATCTGCAACCTACACCACAGCTCACGGCAACCCCAGATCCTTTA
ACCCACTGAGCAAGGCCAGGGTTCAAACCCGCAACTTCATGGTTCCTAGTTGGATTTGTTTCTG
CTGTCCCACTGCAGGAACTCCACAGTCTCCCTTGAATTTTAAATTGCATCCCTGGCGTTCCCAT
TGTGGCTCTGTGGTAATGAACCTGACTAGTACCCATGAGGATTCAGGTTCTATTCCTGGCCTCT
CTCAATGGGGTAAAGCATTGCCATGACCTGTGGTGTAGGTCGCAGACGCAGCTCAGATCCCGTG
CTGCTGTGGCTGTGGTATAGGCCAGCAGCTGCAGCTCTGATTTGACCCTGGGAACATCCATATG
CCTTGGGTACAGCCCTCAAAAGACATAATTAATTAATTAATTAATTAATTAGTGTCCTTCCTTT
CTCCAGAGAGGGAGCAAGGAAAAGAAAATTTGAGTGCTTCGAAGGAAAATGCCAAAATTCAAAA
GGGGGCTATGATGCTGTTTCAGCTGCATGTGGAACTGGGTAACCAGATATGACCATGAGGAGGA
GGCCAGGCACCTCAAACTCATTCTCCTAACTGAGGTCACCCTGAGCAGGACCCAGTATACCAGA
CCAGCTTTGGCCTGTGAGCAGTCGACTAGCCACTACATAAATATATGTCAGATAAGGAAATAAA
GGAGTGGACAGGTAACCAGTTCATTGTCTTCTTTTGATTATTGGGAGTGCAAATGTTCAATACA
ACTTGGGTATTGGGAATGTAAACATTTAATCTAATTGAATAAATAAACGAAGATCTTCAGCTGC
TAATGAAAGGAACCCAATGCAAACTGGCCGGTGTAGGATAGCTGTATCTTATGAATCTTTCTCT
TTCTCCCTCCTCTCTCTAGTTACTTATACATTGAGTAATAGATATAATCCATGGACAGACCTAA
ATATAATCACTTCAGCATTATTGGAAATCTCTGTTATTGCTGTTTTCCTCCATGTTGGCCATAT
TCTCAAGCAGGCTTTTCCTACCCTGCAAACCCAATGGAAAGAGCTTATTTTTTCCCCAATAACT
GTGGGGAAAAAACCCTGCGAAGTTTTTCTGTAGGCTCCCTGGGGACCATATATCCACACTGGAA
CCAATCCTAAGGAGATGCCGAGATCAGATTGGCTGGCCCTTGGTCACTGCCTTCTCCTGGAGGC
AGGTGCTAGGTGAGTCAGTTCTATTTCATCTGCAAGGTCTGAATGGGAGCATGGGGTGCCTCAA
GGTGAAATCAGCATGCTGTCACTAAAAATTGATGCTGGGTAGAAAAAGACAAAAACAAAAACAG
AGCACTGAGCCAAATGTAAGCTACTCAAATAAAAAGGAATTCGTTTTCATAA

hide sequence

RefSeq Acc Id:

XM_021088515 ⟹ XP_020944174

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	83,322,175 - 83,400,970 (-)	NCBI

Sequence:

show sequence

GAGGTAGAGAGGCAGGGTGGTGGAGCCGGACCACCCTGGGCATTGAAAGCACTGTCCCGAACAG
CTCCTTTTGGGGGGAGGGGGAGGTCCTGAGAGAACACGGACACATCAACCAGGGAAGGTCCTCA
CATGTTGCCCAGGGACGCCAGGAAAACCAGCTCAGGACCAGGGCAGACGGGGCAGTCCCGCAGC
CAGCGAGCCGGGCGCGCCGCCGCCCACTTGCGCTGTGCCCGCCGCAGCCGAACCCGGCCCGGGC
GGGAGCCGAGCGGAGAGCGAGGATCGCGAGCCCAGGCCCGAGTGAGCGCGCTCGGCCGCCGCCG
AGTCGGCACCTGGAGGACATGGAGGAAAGGCCAGCAGAGACCAACGCCAATGTGGACGACTCGG
CGCTCCCCTCGGTGGCCCAGCTGGCTGGGCGGTTTAGGGAACAGGCAGCCGCTGCAAAGGAGAC
ACCAGCCAGTAGACCAACAAGAAGGAAACCACCCTGCTCCCTCTCTCTGTTCCCCCCCAAGGTA
GAGCTGGGCCAGAATGGTGAGGAGAAGTCACCACCCACTGCAAACCACCCTCCTAAAATGAAGG
TGAAGAGCTCGCCTCTGATTGAGAAGCTTCAGGCCAATTTAGCCTTTGATCCAGCTGCCCTGCT
GCCTGGGGCATCACCCAAGAGTCCTGGTCTTAAGGCCATGGTGTCACCATTTCACAGCCCACCT
TCTACCCCCAGCAGCCCTGGCGTGCGCTCTCGGGCCAGTGAGCCTGAGGAACCACCCGTCAGCT
TCGACCAGCCTCCTGAAGGCAGCCATCTGCCCTGTTACAACAAGGTGCGGACGAGGGGCTCCAT
TAAAAGGCGCCCTCCCTCCAGGCGATTCCGAAGGTCCCAGTCGGACTGTGGGGACCTGGGGGAC
TTCAGGGCAGTGGAGTCCTCCCAGGAGAATGGTGCCAAGGAAGAAAACGGGGATGAGGTGTTCC
CAGCCAAGGGCAAGGCCCCAGGATCCCCTCCTCAGAGCCGGATGTCCAGCAGGACAGAGAAGCC
AGAGGAGAAGGGCAGGGCGGCAGAGAAAGCCCAGCAGCCCGAGAAGGCCATGGGGAACTCCGAG
GAGGGGGCAGGCCAGCGTCCAGCCCAAGCCTCCAGCCCAGAAAGAGAGGATGCAAGTGGGAGTC
CCACGGAGGAGAAACCAGCTGGAGGGCAGACGGAAGAGCCCTCAGAGGTGAAGGAGAAGGCGGC
AAGTGGAGAGGAGGAGCCCGGACAGAGGGGCCCAGACACAAAGGGGCCGGAGGAGGGAGCTGGG
GCAGAGGAGACTCCGAAGAAGAGTCTCCCTGGAGAAGTGGAGGGGGGCCACAGCTCAGAGCAGG
AGACCAGCATGGAAAAGCAAGATGAGGGGACCGGCCTTGAGCCAGGCTGCAACCCTGGCACCAG
CCATACCCAGCCGGACACCAGCAGTGAGGTTCTCAAGACAGAGGATAACACCCCTGTCCAGGAA
ATTAAAATGTGAAGAAGAGCATATGGTGCCTCGTGATGAAGCTGCTGCTCGAGCCATCCCTTTG
GAAGTAGCTGCAATGATAGGAGCAGCAGCACAGGAAGCCATCGCAGAAGCGGACTGGGCTGAGG
GTCTGGAGTTAGCCTGAAGACAGGTTGCAGTTTCCCGACCTCCACACCATCACCAGCTGAGACT
GGATCTGAGGGCAGCAGGCTTTTATCAATCAGCTTGAGTTTGTGTCACTTGATGGAACGTGGTT
TAAAAAAAAAAAAAAAGTATTTAAAACAATGTGCAGTGGTGCCAACTCCCCAGGGATACTGGTC
CACCTGTGGAGCCCAGACACTGCCCACACCCACCTATCTCTATCGCTGACCTCAGAACGGGACT
AGGATTGAGCTGATCTGATTTGTTTTGCATAAAAGGACAGCCTTTTTACTGTTCTAAAGTTTTC
ACAGTCCTCAAATGTAAGTAAAAACTCATTTCAGGTGGCTAGAAACAAGAGTATCGCTGGAAAT
AGAAACCCTGTAAGTTATGGAAGAGCGTAAGAAATCCTGTAAATTACGAGACAGCCTTTCAGCT
CTGTCCAAATTTAAACCGGCCAATGGATTTTGAAAACATTGCACTAAAAGAGGTAATTATTGAA
ACATTAAAAAATATGTGTCCGTTCCAGCAGCAGGAGCTTTTCCCCTCTGCCTGGTAGTTCCTTA
GTTGATGATATGCTGGGAGGTAAGCAGCTCTGCTCACTGGCTGAGGAGGAGGAGGCAGGGAGCA
GCTCCTTTGGAGAGGCAGAGTGTCAGGTTTCAGGCTACATTTCCTCCTCCTGAAAGCAGCAGAG
CACGACAACCTGAGCAATGCCTGCCCTCTGCTTTATCCTGGGGGAAGGAAGCTTGCCCTTCCAG
AAGGGGGCCCTCAAGCATGGATTAGGTACCTCTTGGGAGGTGCTTTGAGCATCGTGATGTGCAA
GGTACATAATGAGACCGTCCTTCCTGGCTTTCCCCACTTGAGTGGAAACCCAGCCTCTCCTCCT
GGACTCGGGAGGGGTGGGATAGCTCTTGCTTTAAGGGTTCTATTTGCAGAATGCAGGAGATTCA
TCAGCAACCCTTTTCCGGACATAGCTGCTCCCCTCTTCACCCACTTCTGCTGAAAGATGCTCAT
CCAAAACATATTTAATTTTTGGAGATGGTCCTTACTCAGATTTGAGTATTTCAGTGTCTCAACA
TGCTGATTTGGTGAGTGGAGCAGTCGTTTTTCTGAAGGTCTCTTAGACCACACTCTACTCTGAC
TTCAGAAAGTAGCCTCTCAGACTCAAAGCTGAAAGATGCTCATCCAAAACATATTTAATTTTTA
GAGATGGTCCTTACTCAGATTTGAGTATTTCAGTGTTTCAACATGCTGATTTGGTGGGTGAAGC
AGTCATTTTTTCGAAGGTCTCTTAGACCACACTCTACTCTGACTTCAGAAAGTAGCCTCTCAGA
CTCAAAGGCCTTATCTCACCGCTGGTACCTCAATTTATCACCCTATTTACAGTTTTTCTAACTC
CAGGATAGTGTTAATGTTTGGGATATATTTTTCCAAAAACTATTTTTAAATCGAATGCAGCTTC
TAAAACTTGTAATCTAGTGAAGACTGATACTGTAATAAGCTTTGTATTTTTGCAGAGTTTTTGG
GAGACGTGTGTTTCAGTTATTTTAAGATCCAGACCGTATCAATCATCTGTCTATTGACAGAGGT
GTATACCCCCTAAACAATACATGGATTTATTTATATATGTCTTTGGATTGTTTATATATTCATG
CACATATCTGGGCAAGAGTTTTGTGAATCTGAGCATGTCTGTGGGTGTGTGTGGTGAAAGGGGA
ACGTTGCCACTTTCCCTTACTAGAAAATGGAAAGGAACAGATGGGATGTAGATGTAAAAATAAA
ACTCTTTTTCTTCTGGAGGGTCCATGTCTTACAGTAGCAGATGAAGAAGCAATGAGAAATGACA
AGAATGTGACGCTGAAGGAGCATTCATGATGGGGTCAAAAGTCTCCCCAGTTCCCTGTTAGTGA
CATTATTGACCAACAAACACAGAGGCCCCATCCTCAGATTTTATTGGTGATGGGGGCTCTTGGT
GGGGAATTTGAGAAGCTTGAAGCTCAGGCAGGACCCTGAGCTTCCCTGTTGGTGCTGCAGCCTT
GCTGTTTACTGCTCTCCTTTCTGGGCATGTTGCATCCCATGGGTGAGACTGGAATTTCAAATTT
GGAGTAAAGAAATCTATTTATGTCTTAGGTGGTACAGAGTCATTTACGTGGTACAGAGTCATCG
CCAGGCCAGGAAAGCTTTCATTTAGGCTTCCTTAAGAGGCTTGAAGGAAAACACTGATGCTTCA
CAGGGACAAGGCTAAAGAGAAGTGTCAGAATCATTCTTCCACTGCCTTTGCAGTCTCCCTTGAA
TTTTTTAATTTATTTTTGGTCTTTTTTTTTGTCTTTTTAGGGCCCCACCTGTGCATATGGAGGT
TCCCAGGCTAGGGGTCGAATCAGAGCTACAGCTTCTGGCCTACACCAGAGCCACAGCAATGCCA
GATCTGAGCCACATCTGCAACCTACACCACAGCTCACGGCAACCCCAGATCCTTTAACCCACTG
AGCAAGGCCAGGGTTCAAACCCGCAACTTCATGGTTCCTAGTTGGATTTGTTTCTGCTGTCCCA
CTGCAGGAACTCCACAGTCTCCCTTGAATTTTAAATTGCATCCCTGGCGTTCCCATTGTGGCTC
TGTGGTAATGAACCTGACTAGTACCCATGAGGATTCAGGTTCTATTCCTGGCCTCTCTCAATGG
GGTAAAGCATTGCCATGACCTGTGGTGTAGGTCGCAGACGCAGCTCAGATCCCGTGCTGCTGTG
GCTGTGGTATAGGCCAGCAGCTGCAGCTCTGATTTGACCCTGGGAACATCCATATGCCTTGGGT
ACAGCCCTCAAAAGACATAATTAATTAATTAATTAATTAATTAGTGTCCTTCCTTTCTCCAGAG
AGGGAGCAAGGAAAAGAAAATTTGAGTGCTTCGAAGGAAAATGCCAAAATTCAAAAGGGGGCTA
TGATGCTGTTTCAGCTGCATGTGGAACTGGGTAACCAGATATGACCATGAGGAGGAGGCCAGGC
ACCTCAAACTCATTCTCCTAACTGAGGTCACCCTGAGCAGGACCCAGTATACCAGACCAGCTTT
GGCCTGTGAGCAGTCGACTAGCCACTACATAAATATATGTCAGATAAGGAAATAAAGGAGTGGA
CAGGTAACCAGTTCATTGTCTTCTTTTGATTATTGGGAGTGCAAATGTTCAATACAACTTGGGT
ATTGGGAATGTAAACATTTAATCTAATTGAATAAATAAACGAAGATCTTCAGCTGCTAATGAAA
GGAACCCAATGCAAACTGGCCGGTGTAGGATAGCTGTATCTTATGAATCTTTCTCTTTCTCCCT
CCTCTCTCTAGTTACTTATACATTGAGTAATAGATATAATCCATGGACAGACCTAAATATAATC
ACTTCAGCATTATTGGAAATCTCTGTTATTGCTGTTTTCCTCCATGTTGGCCATATTCTCAAGC
AGGCTTTTCCTACCCTGCAAACCCAATGGAAAGAGCTTATTTTTTCCCCAATAACTGTGGGGAA
AAAACCCTGCGAAGTTTTTCTGTAGGCTCCCTGGGGACCATATATCCACACTGGAACCAATCCT
AAGGAGATGCCGAGATCAGATTGGCTGGCCCTTGGTCACTGCCTTCTCCTGGAGGCAGGTGCTA
GGTGAGTCAGTTCTATTTCATCTGCAAGGTCTGAATGGGAGCATGGGGTGCCTCAAGGTGAAAT
CAGCATGCTGTCACTAAAAATTGATGCTGGGTAGAAAAAGACAAAAACAAAAACAGAGCACTGA
GCCAAATGTAAGCTACTCAAATAAAAAGGAATTCGTTTTCATAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001231391	(Get FASTA)	NCBI Sequence Viewer
	XP_020944172	(Get FASTA)	NCBI Sequence Viewer
	XP_020944174	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000006724.5
	ENSSSCP00000034518
	ENSSSCP00000034518.1
	ENSSSCP00000073407.1
	ENSSSCP00015007483.1
	ENSSSCP00015007499.1
	ENSSSCP00015007514.1
	ENSSSCP00025020646.1
	ENSSSCP00025020657.1
	ENSSSCP00025020682.1
	ENSSSCP00030003686.1
	ENSSSCP00030003689.1
	ENSSSCP00030003693.1
	ENSSSCP00030003698.1
	ENSSSCP00040038929.1
	ENSSSCP00040038972.1
	ENSSSCP00040039035.1
	ENSSSCP00040039074.1
	ENSSSCP00045010024.1
	ENSSSCP00045010078.1
	ENSSSCP00045010116.1
	ENSSSCP00045010179.1
	ENSSSCP00050044116.1
	ENSSSCP00050044117.1
	ENSSSCP00050044118.1
	ENSSSCP00050044119.1
	ENSSSCP00055040262.1
	ENSSSCP00055040306.1
	ENSSSCP00055040359.1
	ENSSSCP00055040438.1
	ENSSSCP00060007821.1
	ENSSSCP00060007823.1
	ENSSSCP00065007797.1
	ENSSSCP00065007801.1
	ENSSSCP00070038435.1
	ENSSSCP00070038441.1
	ENSSSCP00070038453.1

RefSeq Acc Id:	XP_020944174 ⟸ XM_021088515
- Peptide Label:	isoform X2
- UniProtKB:	A0A480TN42 (UniProtKB/TrEMBL), A0A8D1FPL1 (UniProtKB/TrEMBL), A0A8D0VBR2 (UniProtKB/TrEMBL), A0A8D1XS88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEERPAETNANVDDSALPSVAQLAGRFREQAAAAKETPASRPTRRKPPCSLSLFPPKVELGQNG EEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALLPGASPKSPGLKAMVSPFHSPPSTPSSP GVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSIKRRPPSRRFRRSQSDCGDLGDFRAVES SQENGAKEENGDEVFPAKGKAPGSPPQSRMSSRTEKPEEKGRAAEKAQQPEKAMGNSEEGAGQR PAQASSPEREDASGSPTEEKPAGGQTEEPSEVKEKAASGEEEPGQRGPDTKGPEEGAGAEETPK KSLPGEVEGGHSSEQETSMEKQDEGTGLEPGCNPGTSHTQPDTSSEVLKTEDNTPVQEIKM hide sequence

RefSeq Acc Id:	XP_020944172 ⟸ XM_021088513
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1V6J3 (UniProtKB/TrEMBL), A0A8D0VBR2 (UniProtKB/TrEMBL), A0A8D1XS88 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEERPAETNANVDDSALPSVAQLAGRFREQAAAAKEKSPPTANHPPKMKVKSSPLIEKLQANLA FDPAALLPGASPKSPGLKAMVSPFHSPPSTPSSPGVRSRASEPEEPPVSFDQPPEGSHLPCYNK VRTRGSIKRRPPSRRFRRSQSDCGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGSPPQSRM SSRTEKPEEKGRAAEKAQQPEKAMGNSEEGAGQRPAQASSPEREDASGSPTEEKPAGGQTEEPS EVKEKAASGEEEPGQRGPDTKGPEEGAGAEETPKKSLPGEVEGGHSSEQETSMEKQDEGTGLEP GCNPGTSHTQPDTSSEVLKTEDNTPVQEIKM hide sequence

RefSeq Acc Id:

NP_001231391 ⟸ NM_001244462

- UniProtKB:

A0A286ZSH0 (UniProtKB/TrEMBL), A0A4X1VA32 (UniProtKB/TrEMBL), A0A8D1XL95 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEKVSTLDLKAEILLICFVHSLFIEGLELLMLRTRADGAVPQPASRARRRPLALCPPQPNPARA
GAERRARIASPGPSERARPPPSRHLEDMEERPAETNANVDDSALPSVAQLAGRFREQAAAAKET
PASRPTRRKPPCSLSLFPPKVELGQNGEEKSPPTANHPPKMKVKSSPLIEKLQANLAFDPAALL
PGASPKSPGLKAMVSPFHSPPSTPSSPGVRSRASEPEEPPVSFDQPPEGSHLPCYNKVRTRGSI
KRRPPSRRFRRSQSDCGDLGDFRAVESSQENGAKEENGDEVFPAKGKAPGSPPQSRMSSRTEKP
EEKGRAAEKAQQPEKAMGNSEEGAGQRPAQASSPEREDASGSPTEEKPAGGQTEEPSEVKEKAA
SGEEEPGQRGPDTKGPEEGAGAEETPKKSLPGEVEGGHSSEQETSMEKQDEGTGLEPGCNPGTS
HTQPDTSSEVLKTEDNTPVQEIKM

hide sequence

RefSeq Acc Id:

ENSSSCP00000072274 ⟸ ENSSSCT00000079659

RefSeq Acc Id:

ENSSSCP00000006724 ⟸ ENSSSCT00000006912

RefSeq Acc Id:

ENSSSCP00000034518 ⟸ ENSSSCT00000045228

RefSeq Acc Id:

ENSSSCP00000073407 ⟸ ENSSSCT00000087342

Protein Domains

FAM21/CAPZIP RCSD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006307	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015014290	UniProtKB/TrEMBL
	ENSSSCG00025035340	UniProtKB/TrEMBL
	ENSSSCG00030006310	UniProtKB/TrEMBL
	ENSSSCG00040064793	UniProtKB/TrEMBL
	ENSSSCG00045008565	UniProtKB/TrEMBL
	ENSSSCG00050074094	UniProtKB/TrEMBL
	ENSSSCG00055025457	UniProtKB/TrEMBL
	ENSSSCG00060014557	UniProtKB/TrEMBL
	ENSSSCG00065014340	UniProtKB/TrEMBL
	ENSSSCG00070022799	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000006912.5	UniProtKB/TrEMBL
	ENSSSCT00000045228	ENTREZGENE
	ENSSSCT00000045228.1	UniProtKB/TrEMBL
	ENSSSCT00000087342.1	UniProtKB/TrEMBL
	ENSSSCT00015019114.1	UniProtKB/TrEMBL
	ENSSSCT00015019155.1	UniProtKB/TrEMBL
	ENSSSCT00015019205.1	UniProtKB/TrEMBL
	ENSSSCT00025048187.1	UniProtKB/TrEMBL
	ENSSSCT00025048208.1	UniProtKB/TrEMBL
	ENSSSCT00025048265.1	UniProtKB/TrEMBL
	ENSSSCT00030008503.1	UniProtKB/TrEMBL
	ENSSSCT00030008512.1	UniProtKB/TrEMBL
	ENSSSCT00030008521.1	UniProtKB/TrEMBL
	ENSSSCT00030008535.1	UniProtKB/TrEMBL
	ENSSSCT00040088571.1	UniProtKB/TrEMBL
	ENSSSCT00040088657.1	UniProtKB/TrEMBL
	ENSSSCT00040088808.1	UniProtKB/TrEMBL
	ENSSSCT00040088904.1	UniProtKB/TrEMBL
	ENSSSCT00045014464.1	UniProtKB/TrEMBL
	ENSSSCT00045014534.1	UniProtKB/TrEMBL
	ENSSSCT00045014582.1	UniProtKB/TrEMBL
	ENSSSCT00045014670.1	UniProtKB/TrEMBL
	ENSSSCT00050101408.1	UniProtKB/TrEMBL
	ENSSSCT00050101409.1	UniProtKB/TrEMBL
	ENSSSCT00050101411.1	UniProtKB/TrEMBL
	ENSSSCT00050101414.1	UniProtKB/TrEMBL
	ENSSSCT00055050369.1	UniProtKB/TrEMBL
	ENSSSCT00055050416.1	UniProtKB/TrEMBL
	ENSSSCT00055050479.1	UniProtKB/TrEMBL
	ENSSSCT00055050575.1	UniProtKB/TrEMBL
	ENSSSCT00060019293.1	UniProtKB/TrEMBL
	ENSSSCT00060019299.1	UniProtKB/TrEMBL
	ENSSSCT00065019078.1	UniProtKB/TrEMBL
	ENSSSCT00065019085.1	UniProtKB/TrEMBL
	ENSSSCT00070045596.1	UniProtKB/TrEMBL
	ENSSSCT00070045603.1	UniProtKB/TrEMBL
	ENSSSCT00070045616.1	UniProtKB/TrEMBL
InterPro	FAM21/CAPZIP	UniProtKB/TrEMBL
	RCSD	UniProtKB/TrEMBL
KEGG Report	ssc:100152372	UniProtKB/TrEMBL
NCBI Gene	RCSD1	ENTREZGENE
Pfam	CAP-ZIP_m	UniProtKB/TrEMBL
	RCSD	UniProtKB/TrEMBL
UniProt	A0A286ZSH0	ENTREZGENE, UniProtKB/TrEMBL
	A0A480TN42	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1V6J3	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1V9V8_PIG	UniProtKB/TrEMBL
	A0A4X1VA32	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2RF79_PIG	UniProtKB/TrEMBL
	A0A8D0MRF5_PIG	UniProtKB/TrEMBL
	A0A8D0MUA1_PIG	UniProtKB/TrEMBL
	A0A8D0VBR2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1FPL1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1GX64_PIG	UniProtKB/TrEMBL
	A0A8D1GXR9_PIG	UniProtKB/TrEMBL
	A0A8D1H223_PIG	UniProtKB/TrEMBL
	A0A8D1P013_PIG	UniProtKB/TrEMBL
	A0A8D1XL95	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1XS88	ENTREZGENE, UniProtKB/TrEMBL
	F1S269_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:92186	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD