EIF3H (eukaryotic translation initiation factor 3 subunit H) - Rat Genome Database

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Gene: EIF3H (eukaryotic translation initiation factor 3 subunit H) Sus scrofa
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Symbol: EIF3H
Name: eukaryotic translation initiation factor 3 subunit H
RGD ID: 14259814
Description: ENCODES a protein that exhibits translation initiation factor activity (ortholog); INVOLVED IN cytoplasmic translational initiation (inferred); formation of cytoplasmic translation initiation complex (inferred); negative regulation of proteasomal ubiquitin-dependent protein catabolic process (inferred); PARTICIPATES IN translation initiation pathway; ASSOCIATED WITH autistic disorder (ortholog); breast cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN eukaryotic translation initiation factor 3 complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl421,954,874 - 22,058,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1421,955,026 - 22,053,683 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2423,327,980 - 23,448,893 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
EIF3H
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl421,954,874 - 22,058,699 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1421,955,026 - 22,053,683 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2423,327,980 - 23,448,893 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EIF3H
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388116,642,130 - 116,766,374 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8116,642,130 - 116,766,925 (-)EnsemblGRCh38hg38GRCh38
GRCh378117,654,369 - 117,768,062 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368117,726,236 - 117,837,243 (-)NCBINCBI36Build 36hg18NCBI36
Build 348117,726,266 - 117,837,222NCBI
Celera8113,843,130 - 113,956,776 (-)NCBICelera
Cytogenetic Map8q23.3-q24.11NCBI
HuRef8112,983,503 - 113,094,395 (-)NCBIHuRef
CHM1_18117,697,603 - 117,808,219 (-)NCBICHM1_1
T2T-CHM13v2.08117,769,451 - 117,883,944 (-)NCBIT2T-CHM13v2.0
Eif3h
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391551,649,956 - 51,728,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1551,649,954 - 51,728,919 (-)EnsemblGRCm39 Ensembl
GRCm381551,786,563 - 51,865,461 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1551,786,558 - 51,865,523 (-)EnsemblGRCm38mm10GRCm38
MGSCv371551,618,109 - 51,697,007 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361551,616,637 - 51,695,535 (-)NCBIMGSCv36mm8
Celera1553,359,320 - 53,438,134 (-)NCBICelera
Cytogenetic Map15CNCBI
cM Map1519.42NCBI
Eif3h
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8784,980,891 - 85,064,284 (-)NCBIGRCr8
mRatBN7.2783,091,037 - 83,174,451 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl783,091,039 - 83,174,451 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx784,986,868 - 85,070,126 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0787,188,085 - 87,271,343 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0787,015,192 - 87,098,341 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0610,151,732 - 10,236,677 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl610,151,729 - 10,236,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl610,151,729 - 10,236,695 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl6108,745,895 - 108,756,130 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06116,798,908 - 116,803,475 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.06116,806,338 - 116,856,511 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4788,069,668 - 88,154,285 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1788,090,397 - 88,175,015 (-)NCBI
Celera779,969,394 - 80,052,871 (-)NCBICelera
Cytogenetic Map7q31NCBI
Eif3h
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541722,754,395 - 22,846,618 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541722,757,781 - 22,846,349 (-)NCBIChiLan1.0ChiLan1.0
EIF3H
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27134,048,331 - 134,158,684 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18109,567,521 - 109,677,808 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08113,320,059 - 113,440,769 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18115,863,493 - 115,984,107 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8115,863,490 - 115,973,872 (-)Ensemblpanpan1.1panPan2
EIF3H
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11316,105,960 - 16,201,902 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1316,105,990 - 16,341,153 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1316,107,272 - 16,203,193 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01316,393,919 - 16,489,878 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1316,393,949 - 16,490,038 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11316,139,289 - 16,233,993 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01316,238,566 - 16,334,288 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01316,479,179 - 16,575,072 (-)NCBIUU_Cfam_GSD_1.0
Eif3h
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530322,083,049 - 22,180,007 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647029,509,151 - 29,606,124 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647029,509,154 - 29,606,124 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF3H
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18111,283,184 - 111,390,835 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603928,934,660 - 29,042,760 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Eif3h
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476314,935,271 - 15,027,010 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476314,938,624 - 15,027,001 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in EIF3H
1936 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 4 3 5 2 23 2 3 3
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000006602   ⟹   ENSSSCP00000006426
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl421,955,042 - 22,053,668 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000046697   ⟹   ENSSSCP00000058574
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl421,955,052 - 22,058,699 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000098497   ⟹   ENSSSCP00000078342
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl421,954,874 - 22,053,675 (+)Ensembl
RefSeq Acc Id: XM_003125515   ⟹   XP_003125563
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1421,955,026 - 22,053,683 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005662892   ⟹   XP_005662949
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1421,955,048 - 22,053,683 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003125563   ⟸   XM_003125515
- Peptide Label: isoform X1
- UniProtKB: A0A480JK41 (UniProtKB/TrEMBL),   A0A4X1T8R1 (UniProtKB/TrEMBL),   A0A8D1U2T9 (UniProtKB/TrEMBL),   A0A8D1V3M0 (UniProtKB/TrEMBL),   A0A8W4FGA3 (UniProtKB/TrEMBL),   A0A8D0IV95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005662949   ⟸   XM_005662892
- Peptide Label: isoform X2
- UniProtKB: F1S1J9 (UniProtKB/TrEMBL),   A0A4X1T8R5 (UniProtKB/TrEMBL),   A0A8D1U2T9 (UniProtKB/TrEMBL),   A0A8D1V3M0 (UniProtKB/TrEMBL),   A0A8W4FGA3 (UniProtKB/TrEMBL),   A0A8D0U884 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000006426   ⟸   ENSSSCT00000006602
RefSeq Acc Id: ENSSSCP00000058574   ⟸   ENSSSCT00000046697
RefSeq Acc Id: ENSSSCP00000078342   ⟸   ENSSSCT00000098497
Protein Domains
JAB1/MPN/MOV34 metalloenzyme   MPN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006016 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005017290 UniProtKB/TrEMBL
  ENSSSCG00015058845 UniProtKB/TrEMBL
  ENSSSCG00025007651 UniProtKB/TrEMBL
  ENSSSCG00030009416 UniProtKB/TrEMBL
  ENSSSCG00035000863 UniProtKB/TrEMBL
  ENSSSCG00040043769 UniProtKB/TrEMBL
  ENSSSCG00045036765 UniProtKB/TrEMBL
  ENSSSCG00050066328 UniProtKB/TrEMBL
  ENSSSCG00055014323 UniProtKB/TrEMBL
  ENSSSCG00060031488 UniProtKB/TrEMBL
  ENSSSCG00065067266 UniProtKB/TrEMBL
  ENSSSCG00070007406 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006602 ENTREZGENE
  ENSSSCT00000006602.4 UniProtKB/TrEMBL
  ENSSSCT00000046697.3 UniProtKB/TrEMBL
  ENSSSCT00000098497 ENTREZGENE
  ENSSSCT00000098497.1 UniProtKB/TrEMBL
  ENSSSCT00005027642.1 UniProtKB/TrEMBL
  ENSSSCT00005027721.1 UniProtKB/TrEMBL
  ENSSSCT00005027767.1 UniProtKB/TrEMBL
  ENSSSCT00015079109.1 UniProtKB/TrEMBL
  ENSSSCT00025010186.1 UniProtKB/TrEMBL
  ENSSSCT00030012934.1 UniProtKB/TrEMBL
  ENSSSCT00035001032.1 UniProtKB/TrEMBL
  ENSSSCT00040058708.1 UniProtKB/TrEMBL
  ENSSSCT00045063398.1 UniProtKB/TrEMBL
  ENSSSCT00050090348.1 UniProtKB/TrEMBL
  ENSSSCT00055028628.1 UniProtKB/TrEMBL
  ENSSSCT00055028729.1 UniProtKB/TrEMBL
  ENSSSCT00060042625.1 UniProtKB/TrEMBL
  ENSSSCT00060042631.1 UniProtKB/TrEMBL
  ENSSSCT00065092377.1 UniProtKB/TrEMBL
  ENSSSCT00065092412.1 UniProtKB/TrEMBL
  ENSSSCT00070014265.1 UniProtKB/TrEMBL
  ENSSSCT00070014270.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/TrEMBL
InterPro eIF3h UniProtKB/TrEMBL
  eIF3h_C UniProtKB/TrEMBL
  JAMM/MPN+_dom UniProtKB/TrEMBL
  MPN UniProtKB/TrEMBL
KEGG Report ssc:100522801 UniProtKB/TrEMBL
NCBI Gene EIF3H ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED UniProtKB/TrEMBL
  PTHR10410:SF3 UniProtKB/TrEMBL
Pfam eIF3h_C UniProtKB/TrEMBL
  JAB UniProtKB/TrEMBL
PROSITE MPN UniProtKB/TrEMBL
SMART JAB_MPN UniProtKB/TrEMBL
UniProt A0A480JK41 ENTREZGENE
  A0A4X1T8R1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1T8R5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IV95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PAY4_PIG UniProtKB/TrEMBL
  A0A8D0U884 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1NLM9_PIG UniProtKB/TrEMBL
  A0A8D1U2T9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1V3M0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FGA3 ENTREZGENE, UniProtKB/TrEMBL
  F1S1J9 ENTREZGENE
UniProt Secondary A0A287BR32 UniProtKB/TrEMBL
  A0A480JK41 UniProtKB/TrEMBL
  F1S1J9 UniProtKB/TrEMBL
VGNC ID VGNC:87620 ENTREZGENE