POMT2 (protein O-mannosyltransferase 2) - Rat Genome Database
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Gene: POMT2 (protein O-mannosyltransferase 2) Sus scrofa
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Symbol: POMT2
Name: protein O-mannosyltransferase 2
RGD ID: 14258896
Description: ENCODES a protein that exhibits mannosyltransferase activity (ortholog); INVOLVED IN positive regulation of protein O-linked glycosylation (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2N (ortholog); congenital muscular dystrophy (ortholog); FOUND IN cytosol (inferred); endoplasmic reticulum membrane (inferred); integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: protein O-mannosyl-transferase 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,350,460 - 100,417,173 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,350,451 - 100,392,164 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,564,993 - 106,604,420 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
POMT2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7100,350,460 - 100,417,173 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17100,350,451 - 100,392,164 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27106,564,993 - 106,604,420 (+)NCBISscrofa10.2Sscrofa10.2susScr3
POMT2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1477,274,956 - 77,320,884 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1477,274,956 - 77,320,883 (-)EnsemblGRCh38hg38GRCh38
GRCh381477,274,956 - 77,320,885 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371477,741,299 - 77,787,225 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371477,741,299 - 77,787,226 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361476,811,052 - 76,856,970 (-)NCBINCBI36hg18NCBI36
Build 341476,811,053 - 76,856,970NCBI
Celera1457,779,861 - 57,825,801 (-)NCBI
Cytogenetic Map14q24.3NCBI
HuRef1457,907,710 - 57,953,334 (-)NCBIHuRef
CHM1_11477,680,748 - 77,726,684 (-)NCBICHM1_1
Pomt2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,153,635 - 87,194,742 (-)NCBIGRCm39mm39
GRCm381287,106,861 - 87,147,968 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,106,861 - 87,147,968 (-)EnsemblGRCm38mm10GRCm38
MGSCv371288,447,816 - 88,488,852 (-)NCBIGRCm37mm9NCBIm37
MGSCv361287,995,969 - 88,037,005 (-)NCBImm8
Celera1288,571,489 - 88,612,407 (-)NCBICelera
Cytogenetic Map12D2NCBI
Pomt2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26106,755,462 - 106,794,849 (-)NCBI
Rnor_6.0 Ensembl6111,135,349 - 111,176,918 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.06111,137,329 - 111,176,991 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06120,423,138 - 120,461,156 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46111,242,085 - 111,259,180 (-)NCBIRGSC3.4rn4RGSC3.4
Celera6104,576,761 - 104,616,136 (-)NCBICelera
Cytogenetic Map6q31NCBI
Pomt2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554381,179,064 - 1,218,860 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554381,179,064 - 1,218,860 (-)NCBIChiLan1.0ChiLan1.0
POMT2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11477,029,625 - 77,075,819 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1477,029,625 - 77,075,806 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01457,827,841 - 57,874,100 (-)NCBIMhudiblu_PPA_v0panPan3
POMT2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl850,091,865 - 50,133,442 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1850,091,861 - 50,133,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Pomt2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364886,102,612 - 6,141,842 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POMT2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12454,519,980 - 54,567,584 (-)NCBI
ChlSab1.1 Ensembl2454,519,754 - 54,567,584 (-)Ensembl
Pomt2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473424,595,748 - 24,636,845 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 23 2 3 3
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000002665   ⟹   ENSSSCP00000002598
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7100,350,460 - 100,392,133 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039501   ⟹   ENSSSCP00000037513
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7100,392,064 - 100,417,173 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000065293   ⟹   ENSSSCP00000039588
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7100,350,461 - 100,392,133 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000083377   ⟹   ENSSSCP00000065862
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl7100,392,064 - 100,417,173 (-)Ensembl
RefSeq Acc Id: XM_001926162   ⟹   XP_001926197
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17100,350,451 - 100,392,164 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005656436   ⟹   XP_005656493
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17100,352,775 - 100,392,022 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021099549   ⟹   XP_020955208
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.17100,352,775 - 100,382,682 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_001926197 (Get FASTA)   NCBI Sequence Viewer  
  XP_005656493 (Get FASTA)   NCBI Sequence Viewer  
  XP_020955208 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_001926197   ⟸   XM_001926162
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005656493   ⟸   XM_005656436
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_020955208   ⟸   XM_021099549
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000037513   ⟸   ENSSSCT00000039501
RefSeq Acc Id: ENSSSCP00000065862   ⟸   ENSSSCT00000083377
RefSeq Acc Id: ENSSSCP00000039588   ⟸   ENSSSCT00000065293
RefSeq Acc Id: ENSSSCP00000002598   ⟸   ENSSSCT00000002665
Protein Domains
MIR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000002397 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070006668 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000002598 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000037513 UniProtKB/TrEMBL
  ENSSSCP00000039588 UniProtKB/TrEMBL
  ENSSSCP00000065862 UniProtKB/TrEMBL
  ENSSSCP00070010538 UniProtKB/TrEMBL
  ENSSSCP00070010562 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000002665 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000039501 UniProtKB/TrEMBL
  ENSSSCT00000065293 UniProtKB/TrEMBL
  ENSSSCT00000083377 UniProtKB/TrEMBL
  ENSSSCT00070012804 UniProtKB/TrEMBL
  ENSSSCT00070012829 UniProtKB/TrEMBL
InterPro GlyclTrfase_39-like UniProtKB/TrEMBL
  Glyco_trans_39/83 UniProtKB/TrEMBL
  MIR_dom_sf UniProtKB/TrEMBL
  MIR_motif UniProtKB/TrEMBL
  PMT_4TMC UniProtKB/TrEMBL
NCBI Gene POMT2 ENTREZGENE
PANTHER PTHR10050 UniProtKB/TrEMBL
Pfam MIR UniProtKB/TrEMBL
  PMT UniProtKB/TrEMBL
  PMT_4TMC UniProtKB/TrEMBL
PROSITE MIR UniProtKB/TrEMBL
SMART MIR UniProtKB/TrEMBL
Superfamily-SCOP SSF82109 UniProtKB/TrEMBL
UniProt A0A287A0S4_PIG UniProtKB/TrEMBL
  A0A287A700_PIG UniProtKB/TrEMBL
  A0A4X1T3Z8_PIG UniProtKB/TrEMBL
  A0A4X1T597_PIG UniProtKB/TrEMBL
  A0A5G2QLW6_PIG UniProtKB/TrEMBL
  F1S2M9_PIG UniProtKB/TrEMBL
VGNC ID VGNC:91660 ENTREZGENE