POLDIP2 (DNA polymerase delta interacting protein 2) - Rat Genome Database

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Gene: POLDIP2 (DNA polymerase delta interacting protein 2) Sus scrofa
Analyze
Symbol: POLDIP2
Name: DNA polymerase delta interacting protein 2
RGD ID: 14258745
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN mitochondrion organization (ortholog); mitotic spindle assembly (ortholog); negative regulation of macroautophagy (ortholog); ASSOCIATED WITH Neointima (ortholog); streptococcal meningitis (ortholog); FOUND IN cell-cell junction (ortholog); midbody (ortholog); mitotic spindle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: polymerase (DNA-directed), delta interacting protein 2; polymerase delta-interacting protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,625,604 - 44,636,289 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,626,447 - 44,636,302 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,538,915 - 46,548,765 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
POLDIP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,625,604 - 44,636,289 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,626,447 - 44,636,302 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21246,538,915 - 46,548,765 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLDIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381728,346,633 - 28,357,527 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1728,346,633 - 28,357,527 (-)EnsemblGRCh38hg38GRCh38
GRCh371726,673,659 - 26,684,550 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361723,697,786 - 23,708,730 (-)NCBINCBI36Build 36hg18NCBI36
Build 341723,697,786 - 23,708,693NCBI
Celera1723,535,404 - 23,546,357 (-)NCBICelera
Cytogenetic Map17q11.2NCBI
HuRef1722,882,056 - 22,893,008 (-)NCBIHuRef
CHM1_11726,736,554 - 26,747,532 (-)NCBICHM1_1
T2T-CHM13v2.01729,288,484 - 29,299,376 (-)NCBIT2T-CHM13v2.0
Poldip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391178,403,105 - 78,413,562 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1178,403,019 - 78,413,562 (+)EnsemblGRCm39 Ensembl
GRCm381178,512,296 - 78,522,736 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1178,512,193 - 78,522,736 (+)EnsemblGRCm38mm10GRCm38
MGSCv371178,325,798 - 78,336,238 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361178,328,491 - 78,338,931 (+)NCBIMGSCv36mm8
Celera1188,144,369 - 88,154,809 (+)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Poldip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81063,905,287 - 63,915,655 (+)NCBIGRCr8
mRatBN7.21063,407,237 - 63,417,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1063,407,213 - 63,417,605 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1068,039,879 - 68,050,258 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01067,545,210 - 67,555,589 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01063,014,737 - 63,025,106 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01065,781,994 - 65,790,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1065,780,494 - 65,790,272 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01065,852,787 - 65,861,626 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41064,623,181 - 64,632,020 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11064,635,612 - 64,645,643 (+)NCBI
Celera1062,385,321 - 62,394,160 (+)NCBICelera
Cytogenetic Map10q25NCBI
Poldip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,776,721 - 4,785,817 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,776,721 - 4,785,817 (+)NCBIChiLan1.0ChiLan1.0
POLDIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21936,101,061 - 36,111,471 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11737,981,489 - 37,991,863 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01728,416,912 - 28,427,280 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11728,919,291 - 28,929,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,919,371 - 28,928,682 (+)Ensemblpanpan1.1panPan2
POLDIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1942,597,792 - 42,607,576 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl942,597,792 - 42,607,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha941,754,715 - 41,764,504 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0943,416,944 - 43,426,747 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl943,416,944 - 43,426,773 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1942,201,185 - 42,210,981 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0942,492,418 - 42,502,205 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0942,569,460 - 42,579,263 (-)NCBIUU_Cfam_GSD_1.0
Poldip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560241,626,091 - 41,634,827 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365384,500,478 - 4,512,761 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365384,504,039 - 4,512,785 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLDIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,113,928 - 22,124,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1622,110,641 - 22,124,301 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660758,004,364 - 8,014,832 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Poldip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624786948,923 - 961,800 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624786943,015 - 961,828 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in POLDIP2
277 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 8 4 3 5 2 22 2 3 3
Low 2 1
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000023831   ⟹   ENSSSCP00000025445
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1244,625,604 - 44,636,289 (-)Ensembl
RefSeq Acc Id: XM_003358174   ⟹   XP_003358222
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11244,626,447 - 44,636,302 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003358222   ⟸   XM_003358174
- UniProtKB: I3LMX3 (UniProtKB/TrEMBL),   A0A4X1TRJ1 (UniProtKB/TrEMBL),   A0A8D0MZC3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000025445   ⟸   ENSSSCT00000023831
Protein Domains
ApaG


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000028920 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015019444 UniProtKB/TrEMBL
  ENSSSCG00025060368 UniProtKB/TrEMBL
  ENSSSCG00030061395 UniProtKB/TrEMBL
  ENSSSCG00035064710 UniProtKB/TrEMBL
  ENSSSCG00040051275 UniProtKB/TrEMBL
  ENSSSCG00045038144 UniProtKB/TrEMBL
  ENSSSCG00050002873 UniProtKB/TrEMBL
  ENSSSCG00055000988 UniProtKB/TrEMBL
  ENSSSCG00060076021 UniProtKB/TrEMBL
  ENSSSCG00065077068 UniProtKB/TrEMBL
  ENSSSCG00070011146 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023831 ENTREZGENE
  ENSSSCT00000023831.4 UniProtKB/TrEMBL
  ENSSSCT00015026341.1 UniProtKB/TrEMBL
  ENSSSCT00025082614.1 UniProtKB/TrEMBL
  ENSSSCT00030085844.1 UniProtKB/TrEMBL
  ENSSSCT00035087126.1 UniProtKB/TrEMBL
  ENSSSCT00040069246.1 UniProtKB/TrEMBL
  ENSSSCT00045066034.1 UniProtKB/TrEMBL
  ENSSSCT00050003687.1 UniProtKB/TrEMBL
  ENSSSCT00055001786.1 UniProtKB/TrEMBL
  ENSSSCT00060104195.1 UniProtKB/TrEMBL
  ENSSSCT00065106598.1 UniProtKB/TrEMBL
  ENSSSCT00070021674.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1470 UniProtKB/TrEMBL
InterPro ApaG_domain UniProtKB/TrEMBL
  ApaG_sf UniProtKB/TrEMBL
  Hemimethylated_DNA-bd_dom UniProtKB/TrEMBL
  Hemimethylated_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report ssc:100624252 UniProtKB/TrEMBL
NCBI Gene POLDIP2 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 3 UniProtKB/TrEMBL
  POLYMERASE DELTA-INTERACTING PROTEIN 2 UniProtKB/TrEMBL
Pfam DUF525 UniProtKB/TrEMBL
  YccV-like UniProtKB/TrEMBL
PROSITE APAG UniProtKB/TrEMBL
SMART YccV-like UniProtKB/TrEMBL
Superfamily-SCOP SSF110069 UniProtKB/TrEMBL
  SSF141255 UniProtKB/TrEMBL
UniProt A0A4X1TRJ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MZC3 ENTREZGENE, UniProtKB/TrEMBL
  I3LMX3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:91629 ENTREZGENE