MEFV (MEFV innate immuity regulator, pyrin) - Rat Genome Database

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Gene: MEFV (MEFV innate immuity regulator, pyrin) Sus scrofa
Analyze
Symbol: MEFV
Name: MEFV innate immuity regulator, pyrin
RGD ID: 14258300
Description: ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); INVOLVED IN inflammatory response (ortholog); negative regulation of cytokine production involved in inflammatory response (ortholog); negative regulation of inflammatory response (ortholog); ASSOCIATED WITH acne (ortholog); acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); inflammasome complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Mediterranean fever; MEFV, pyrin innate immunity regulator; pyrin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1338,934,573 - 38,948,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,322,567 - 40,336,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
MEFV
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1338,934,573 - 38,948,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,322,567 - 40,336,494 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MEFV
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38163,242,027 - 3,256,633 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl163,242,027 - 3,256,633 (-)EnsemblGRCh38hg38GRCh38
GRCh37163,292,027 - 3,306,633 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36163,232,029 - 3,246,628 (-)NCBINCBI36hg18NCBI36
Build 34163,232,028 - 3,246,628NCBI
Celera163,497,690 - 3,512,281 (-)NCBI
Cytogenetic Map16p13.3NCBI
HuRef163,261,626 - 3,276,174 (-)NCBIHuRef
CHM1_1163,291,965 - 3,306,560 (-)NCBICHM1_1
T2T-CHM13v2.0163,269,087 - 3,283,689 (-)NCBI
Mefv
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39163,524,838 - 3,536,073 (-)NCBIGRCm39mm39
GRCm39 Ensembl163,525,082 - 3,535,961 (-)Ensembl
GRCm38163,706,974 - 3,718,211 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl163,707,218 - 3,718,097 (-)EnsemblGRCm38mm10GRCm38
MGSCv37163,707,215 - 3,718,124 (-)NCBIGRCm37mm9NCBIm37
MGSCv36163,622,443 - 3,633,325 (-)NCBImm8
Celera164,345,682 - 4,356,386 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map162.18NCBI
Mefv
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21011,786,948 - 11,796,977 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1011,787,422 - 11,796,973 (+)Ensembl
Rnor_6.01012,045,813 - 12,056,229 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1012,046,541 - 12,056,311 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01010,804,440 - 10,813,964 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41012,059,821 - 12,069,345 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11012,059,820 - 12,069,345 (+)NCBI
Celera1010,738,861 - 10,748,385 (+)NCBICelera
Cytogenetic Map10q12NCBI
Mefv
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,068,348 - 14,094,016 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,068,436 - 14,093,889 (+)NCBIChiLan1.0ChiLan1.0
MEFV
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1163,354,981 - 3,368,970 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl163,353,666 - 3,368,970 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0162,175,858 - 2,191,056 (-)NCBIMhudiblu_PPA_v0panPan3
MEFV
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1637,964,776 - 37,984,830 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl637,970,608 - 37,983,737 (+)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0638,276,711 - 38,296,162 (+)NCBI
ROS_Cfam_1.0 Ensembl638,282,480 - 38,295,669 (+)Ensembl
UMICH_Zoey_3.1637,962,758 - 37,982,210 (+)NCBI
UNSW_CanFamBas_1.0637,935,294 - 37,954,719 (+)NCBI
UU_Cfam_GSD_1.0638,410,844 - 38,430,317 (+)NCBI
Mefv
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,728,858 - 105,739,439 (-)NCBI
SpeTri2.0NW_004936694970,706 - 980,605 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEFV
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,971,323 - 2,991,501 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606827,841,180 - 27,856,544 (+)NCBIVero_WHO_p1.0
Mefv
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248241,035,094 - 1,047,678 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248241,035,172 - 1,047,632 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013995728   ⟹   XP_013851182
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1338,934,621 - 38,948,609 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013995729   ⟹   XP_013851183
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1338,934,573 - 38,948,609 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013851182 (Get FASTA)   NCBI Sequence Viewer  
  XP_013851183 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013851183   ⟸   XM_013995729
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013851182   ⟸   XM_013995728
- Peptide Label: isoform X1
- UniProtKB: F1RHL5 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene MEFV ENTREZGENE
UniProt F1RHL5 ENTREZGENE