SNX30 (sorting nexin family member 30) - Rat Genome Database

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Gene: SNX30 (sorting nexin family member 30) Sus scrofa
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Symbol: SNX30
Name: sorting nexin family member 30
RGD ID: 14256310
Description: ENCODES a protein that exhibits phosphatidylinositol binding (inferred); INVOLVED IN protein transport (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: sorting nexin-30
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,428,508 - 253,550,375 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,428,461 - 253,555,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,234,538 - 284,364,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
SNX30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,428,508 - 253,550,375 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,428,461 - 253,555,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,234,538 - 284,364,775 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNX30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9112,750,760 - 112,881,671 (+)EnsemblGRCh38hg38GRCh38
GRCh389112,749,723 - 112,875,847 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379115,513,040 - 115,637,267 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369114,552,955 - 114,677,088 (+)NCBINCBI36hg18NCBI36
Celera986,330,021 - 86,454,125 (-)NCBI
Cytogenetic Map9q32NCBI
HuRef985,110,784 - 85,235,103 (+)NCBIHuRef
CHM1_19115,660,589 - 115,784,556 (+)NCBICHM1_1
Snx30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39459,805,137 - 59,904,740 (+)NCBIGRCm39mm39
GRCm39 Ensembl459,805,840 - 59,904,737 (+)Ensembl
GRCm38459,805,131 - 59,904,740 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl459,805,840 - 59,904,737 (+)EnsemblGRCm38mm10GRCm38
MGSCv37459,818,522 - 59,917,612 (+)NCBIGRCm37mm9NCBIm37
MGSCv36459,899,704 - 59,998,794 (+)NCBImm8
Celera459,722,562 - 59,821,429 (+)NCBICelera
Cytogenetic Map4B3NCBI
Snx30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2574,683,902 - 74,813,013 (+)NCBI
Rnor_6.0 Ensembl577,052,484 - 77,157,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0577,052,445 - 77,161,964 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0581,185,823 - 81,292,332 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4577,924,034 - 78,037,119 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1577,929,367 - 78,042,520 (+)NCBI
Celera573,498,886 - 73,602,194 (+)NCBICelera
Cytogenetic Map5q24NCBI
Snx30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,567,317 - 14,619,637 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,567,317 - 14,645,442 (-)NCBIChiLan1.0ChiLan1.0
SNX30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19112,031,879 - 112,150,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,031,860 - 112,143,933 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0983,878,128 - 83,997,124 (+)NCBIMhudiblu_PPA_v0panPan3
SNX30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,233,469 - 67,294,159 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,233,256 - 67,289,224 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1165,593,004 - 65,700,845 (+)NCBI
ROS_Cfam_1.01168,312,076 - 68,420,280 (+)NCBI
UMICH_Zoey_3.11166,828,471 - 66,936,337 (+)NCBI
UNSW_CanFamBas_1.01166,851,734 - 66,959,739 (+)NCBI
UU_Cfam_GSD_1.01167,596,127 - 67,704,210 (+)NCBI
Snx30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,473,720 - 182,582,022 (+)NCBI
SpeTri2.0NW_004936559684,536 - 792,829 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX30
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,650,088 - 26,774,395 (-)NCBI
ChlSab1.1 Ensembl1226,656,221 - 26,774,009 (-)Ensembl
Snx30
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476022,138,646 - 22,261,392 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 2 2
Low 10 4 3 4 2 21 3 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000006017   ⟹   ENSSSCP00000005867
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1253,428,508 - 253,549,819 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000040628   ⟹   ENSSSCP00000039568
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1253,428,508 - 253,550,375 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000052566   ⟹   ENSSSCP00000038531
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1253,428,508 - 253,550,375 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000060807   ⟹   ENSSSCP00000051243
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1253,428,508 - 253,550,375 (+)Ensembl
RefSeq Acc Id: XM_003122081   ⟹   XP_003122129
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11253,428,461 - 253,555,463 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003122129 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003122129   ⟸   XM_003122081
- UniProtKB: A0A287A447 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000039568   ⟸   ENSSSCT00000040628
RefSeq Acc Id: ENSSSCP00000051243   ⟸   ENSSSCT00000060807
RefSeq Acc Id: ENSSSCP00000005867   ⟸   ENSSSCT00000006017
RefSeq Acc Id: ENSSSCP00000038531   ⟸   ENSSSCT00000052566
Protein Domains
PX


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005471 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00070021835 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000005867 UniProtKB/TrEMBL
  ENSSSCP00000038531 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000039568 UniProtKB/TrEMBL
  ENSSSCP00000051243 UniProtKB/TrEMBL
  ENSSSCP00070036504 UniProtKB/TrEMBL
  ENSSSCP00070036508 UniProtKB/TrEMBL
  ENSSSCP00070036514 UniProtKB/TrEMBL
  ENSSSCP00070036517 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000006017 UniProtKB/TrEMBL
  ENSSSCT00000040628 UniProtKB/TrEMBL
  ENSSSCT00000052566 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000060807 UniProtKB/TrEMBL
  ENSSSCT00070043377 UniProtKB/TrEMBL
  ENSSSCT00070043384 UniProtKB/TrEMBL
  ENSSSCT00070043391 UniProtKB/TrEMBL
  ENSSSCT00070043393 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  Phox UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  SNX30 UniProtKB/TrEMBL
KEGG Report ssc:100516535 UniProtKB/TrEMBL
NCBI Gene SNX30 ENTREZGENE
PANTHER PTHR45949:SF1 UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
PROSITE PS50195 UniProtKB/TrEMBL
SMART SM00312 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF64268 UniProtKB/TrEMBL
UniProt A0A287A447 ENTREZGENE, UniProtKB/TrEMBL
  A0A287A6Y0_PIG UniProtKB/TrEMBL
  A0A287B570_PIG UniProtKB/TrEMBL
  A0A4X1V1G4_PIG UniProtKB/TrEMBL
  A0A4X1V4I7_PIG UniProtKB/TrEMBL
  A0A4X1V4J8_PIG UniProtKB/TrEMBL
  A0A4X1V5S8_PIG UniProtKB/TrEMBL
  F1SNA5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93318 ENTREZGENE