TARM1 (T cell-interacting, activating receptor on myeloid cells 1) - Rat Genome Database

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Gene: TARM1 (T cell-interacting, activating receptor on myeloid cells 1) Sus scrofa
Analyze
Symbol: TARM1
Name: T cell-interacting, activating receptor on myeloid cells 1
RGD ID: 14256069
Description: ENCODES a protein that exhibits immunoglobulin receptor binding (ortholog); INVOLVED IN negative regulation of CD4-positive, alpha-beta T cell activation (ortholog); negative regulation of CD4-positive, alpha-beta T cell proliferation (ortholog); positive regulation of cytokine production involved in inflammatory response (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: T-cell-interacting, activating receptor on myeloid cells protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,038,524 - 56,049,764 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,038,524 - 56,051,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,165,322 - 53,171,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
plasma membrane  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TARM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl656,038,524 - 56,049,764 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1656,038,524 - 56,051,487 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,165,322 - 53,171,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TARM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,069,895 - 54,081,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,069,895 - 54,081,365 (-)EnsemblGRCh38hg38GRCh38
GRCh371954,573,149 - 54,584,634 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,265,069 - 59,276,421 (-)NCBINCBI36Build 36hg18NCBI36
Celera1951,612,866 - 51,624,307 (-)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1950,888,981 - 50,900,482 (-)NCBIHuRef
CHM1_11954,574,966 - 54,586,384 (-)NCBICHM1_1
T2T-CHM13v2.01957,148,389 - 57,159,893 (-)NCBIT2T-CHM13v2.0
Tarm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3973,535,015 - 3,551,159 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl73,535,016 - 3,551,140 (-)EnsemblGRCm39 Ensembl
GRCm3873,486,499 - 3,502,754 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl73,486,500 - 3,502,624 (-)EnsemblGRCm38mm10GRCm38
MGSCv3773,489,957 - 3,503,433 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera73,442,677 - 3,460,387 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.04NCBI
Tarm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8174,582,103 - 74,600,203 (+)NCBIGRCr8
mRatBN7.2165,666,742 - 65,682,402 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl165,671,902 - 65,679,626 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0164,241,742 - 64,256,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl164,241,865 - 64,254,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0163,233,198 - 63,248,022 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4163,979,894 - 63,992,593 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera163,390,776 - 63,405,679 (+)NCBICelera
Cytogenetic Map1q12NCBI
TARM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,074,577 - 60,087,223 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11961,996,362 - 62,009,012 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,002,643 - 51,014,597 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11959,846,601 - 59,857,087 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1959,846,601 - 59,857,087 (-)Ensemblpanpan1.1panPan2
LOC484314
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11103,182,052 - 103,187,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1103,243,657 - 103,249,266 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,831,921 - 103,837,531 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11103,464,747 - 103,470,357 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01103,226,403 - 103,232,012 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,945,330 - 103,950,941 (-)NCBIUU_Cfam_GSD_1.0
TARM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1646,749,522 - 46,755,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl646,749,580 - 46,754,799 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607326,835,838 - 26,840,960 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in TARM1
230 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000076786   ⟹   ENSSSCP00000070712
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl656,045,020 - 56,049,779 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000092994   ⟹   ENSSSCP00000075719
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl656,045,444 - 56,049,779 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000095574   ⟹   ENSSSCP00000077424
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl656,045,009 - 56,049,779 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000105662   ⟹   ENSSSCP00000077528
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl656,045,129 - 56,050,615 (+)Ensembl
RefSeq Acc Id: XM_021094890   ⟹   XP_020950549
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1656,038,524 - 56,051,487 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020950549 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000070712.2
  ENSSSCP00000075719.1
  ENSSSCP00000077424.1
  ENSSSCP00000077528.1
  ENSSSCP00070043973.1
Reference Protein Sequences
RefSeq Acc Id: XP_020950549   ⟸   XM_021094890
- UniProtKB: A0A4X1VKF0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000070712   ⟸   ENSSSCT00000076786
RefSeq Acc Id: ENSSSCP00000075719   ⟸   ENSSSCT00000092994
RefSeq Acc Id: ENSSSCP00000077528   ⟸   ENSSSCT00000105662
RefSeq Acc Id: ENSSSCP00000077424   ⟸   ENSSSCT00000095574
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000042091 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00070025967 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000076786.2 UniProtKB/TrEMBL
  ENSSSCT00000092994.1 UniProtKB/TrEMBL
  ENSSSCT00000095574.1 UniProtKB/TrEMBL
  ENSSSCT00000105662.1 UniProtKB/TrEMBL
  ENSSSCT00070051967.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/TrEMBL
NCBI Gene TARM1 ENTREZGENE
PANTHER MHC CLASS I NK CELL RECEPTOR UniProtKB/TrEMBL
  T-CELL-INTERACTING, ACTIVATING RECEPTOR ON MYELOID CELLS PROTEIN 1 UniProtKB/TrEMBL
Pfam Ig_2 UniProtKB/TrEMBL
  PF00047 UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A4X1VKF0 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2R2Z0_PIG UniProtKB/TrEMBL
  A0A8W4FA58_PIG UniProtKB/TrEMBL
  A0A8W4FF84_PIG UniProtKB/TrEMBL
  A0A8W4FGI4_PIG UniProtKB/TrEMBL