TMEM63A (transmembrane protein 63A) - Rat Genome Database

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Gene: TMEM63A (transmembrane protein 63A) Sus scrofa
Analyze
Symbol: TMEM63A
Name: transmembrane protein 63A
RGD ID: 14254493
Description: ENCODES a protein that exhibits calcium-activated cation channel activity (inferred); mechanosensitive monoatomic ion channel activity (inferred); nucleic acid binding (inferred); INVOLVED IN monoatomic cation transmembrane transport (inferred); monoatomic ion transmembrane transport (inferred); ASSOCIATED WITH Disease Progression (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN early endosome membrane (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CSC1-like protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,769,605 - 13,814,020 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,771,795 - 13,814,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,975,250 - 16,015,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TMEM63A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,769,605 - 13,814,020 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,771,795 - 13,814,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21015,975,250 - 16,015,708 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM63A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381225,840,556 - 225,882,380 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1225,845,536 - 225,882,380 (-)EnsemblGRCh38hg38GRCh38
GRCh371226,033,237 - 226,070,080 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361224,099,863 - 224,136,671 (-)NCBINCBI36Build 36hg18NCBI36
Celera1199,224,296 - 199,261,462 (-)NCBICelera
Cytogenetic Map1q42.12NCBI
HuRef1196,550,933 - 196,588,105 (-)NCBIHuRef
CHM1_11227,305,554 - 227,342,737 (-)NCBICHM1_1
T2T-CHM13v2.01225,028,653 - 225,070,125 (-)NCBIT2T-CHM13v2.0
Tmem63a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391180,769,899 - 180,802,671 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1180,769,909 - 180,802,677 (+)EnsemblGRCm39 Ensembl
GRCm381180,942,286 - 180,975,106 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1180,942,344 - 180,975,112 (+)EnsemblGRCm38mm10GRCm38
MGSCv371182,872,649 - 182,905,235 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361182,779,193 - 182,811,779 (+)NCBIMGSCv36mm8
Celera1188,007,992 - 188,040,911 (+)NCBICelera
Cytogenetic Map1H4NCBI
cM Map184.46NCBI
Tmem63a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81395,194,323 - 95,227,944 (+)NCBIGRCr8
mRatBN7.21392,662,872 - 92,696,186 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1392,663,968 - 92,696,183 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1395,168,759 - 95,201,496 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01396,568,688 - 96,601,427 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01393,743,385 - 93,776,126 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01399,219,585 - 99,253,176 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1399,220,510 - 99,253,316 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013104,217,467 - 104,250,973 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41396,671,527 - 96,704,177 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11396,860,142 - 96,893,106 (+)NCBI
Celera1392,206,402 - 92,238,798 (+)NCBICelera
Cytogenetic Map13q26NCBI
TMEM63A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2123,652,821 - 23,692,349 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1123,600,025 - 23,639,447 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01201,306,608 - 201,344,627 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11206,302,729 - 206,344,760 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1206,307,554 - 206,343,458 (-)Ensemblpanpan1.1panPan2
TMEM63A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1738,936,989 - 38,964,349 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl738,937,041 - 38,964,345 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,421,464 - 38,446,556 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0738,770,941 - 38,798,318 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl738,771,006 - 38,798,314 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1738,613,007 - 38,638,098 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0738,621,158 - 38,646,233 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0738,890,919 - 38,916,009 (+)NCBIUU_Cfam_GSD_1.0
Tmem63a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934452,056,943 - 52,093,748 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365262,652,111 - 2,690,451 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365262,653,556 - 2,690,427 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM63A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,887,535 - 3,924,422 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,890,581 - 3,922,944 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660553,893,879 - 3,930,728 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in TMEM63A
1699 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 4
Low 10 4 3 4 2 19 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000011876   ⟹   ENSSSCP00000011572
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1013,773,963 - 13,814,020 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000038160   ⟹   ENSSSCP00000033512
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1013,773,963 - 13,814,020 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000039484   ⟹   ENSSSCP00000041108
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1013,773,963 - 13,814,020 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000042074   ⟹   ENSSSCP00000053822
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1013,773,963 - 13,814,020 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000053194   ⟹   ENSSSCP00000032451
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1013,769,605 - 13,807,206 (-)Ensembl
RefSeq Acc Id: NM_001243189   ⟹   NP_001230118
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11013,773,961 - 13,813,289 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653774   ⟹   XP_005653831
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11013,771,795 - 13,814,441 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653775   ⟹   XP_005653832
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11013,771,795 - 13,813,075 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005653777   ⟹   XP_005653834
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11013,771,795 - 13,814,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013978258   ⟹   XP_013833712
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11013,771,795 - 13,814,442 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064006   ⟹   XP_020919665
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11013,771,795 - 13,814,441 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005653834   ⟸   XM_005653777
- Peptide Label: isoform X1
- UniProtKB: A0A8D1QMV7 (UniProtKB/TrEMBL),   A0A480HSF1 (UniProtKB/TrEMBL),   A0A480I7E5 (UniProtKB/TrEMBL),   A0A480IME3 (UniProtKB/TrEMBL),   A0A8D0U1G5 (UniProtKB/TrEMBL),   A0A8D1WR25 (UniProtKB/TrEMBL),   A0A8D1Y957 (UniProtKB/TrEMBL),   A0A8D1JAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013833712   ⟸   XM_013978258
- Peptide Label: isoform X1
- UniProtKB: A0A8D1QMV7 (UniProtKB/TrEMBL),   A0A480HSF1 (UniProtKB/TrEMBL),   A0A480I7E5 (UniProtKB/TrEMBL),   A0A480IME3 (UniProtKB/TrEMBL),   A0A8D0U1G5 (UniProtKB/TrEMBL),   A0A8D1WR25 (UniProtKB/TrEMBL),   A0A8D1Y957 (UniProtKB/TrEMBL),   A0A8D1JAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653831   ⟸   XM_005653774
- Peptide Label: isoform X1
- UniProtKB: A0A8D1QMV7 (UniProtKB/TrEMBL),   A0A480HSF1 (UniProtKB/TrEMBL),   A0A480I7E5 (UniProtKB/TrEMBL),   A0A480IME3 (UniProtKB/TrEMBL),   A0A8D0U1G5 (UniProtKB/TrEMBL),   A0A8D1WR25 (UniProtKB/TrEMBL),   A0A8D1Y957 (UniProtKB/TrEMBL),   A0A8D1JAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020919665   ⟸   XM_021064006
- Peptide Label: isoform X1
- UniProtKB: A0A8D1QMV7 (UniProtKB/TrEMBL),   A0A480HSF1 (UniProtKB/TrEMBL),   A0A480I7E5 (UniProtKB/TrEMBL),   A0A480IME3 (UniProtKB/TrEMBL),   A0A8D0U1G5 (UniProtKB/TrEMBL),   A0A8D1WR25 (UniProtKB/TrEMBL),   A0A8D1Y957 (UniProtKB/TrEMBL),   A0A8D1JAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005653832   ⟸   XM_005653775
- Peptide Label: isoform X1
- UniProtKB: A0A8D1QMV7 (UniProtKB/TrEMBL),   A0A480HSF1 (UniProtKB/TrEMBL),   A0A480I7E5 (UniProtKB/TrEMBL),   A0A480IME3 (UniProtKB/TrEMBL),   A0A8D0U1G5 (UniProtKB/TrEMBL),   A0A8D1WR25 (UniProtKB/TrEMBL),   A0A8D1Y957 (UniProtKB/TrEMBL),   A0A8D1JAS5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001230118   ⟸   NM_001243189
- UniProtKB: A0A480I7E5 (UniProtKB/TrEMBL),   A0A8D1Y957 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000041108   ⟸   ENSSSCT00000039484
RefSeq Acc Id: ENSSSCP00000011572   ⟸   ENSSSCT00000011876
RefSeq Acc Id: ENSSSCP00000053822   ⟸   ENSSSCT00000042074
RefSeq Acc Id: ENSSSCP00000032451   ⟸   ENSSSCT00000053194
RefSeq Acc Id: ENSSSCP00000033512   ⟸   ENSSSCT00000038160

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010854 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005012247 UniProtKB/TrEMBL
  ENSSSCG00015033444 UniProtKB/TrEMBL
  ENSSSCG00025075332 UniProtKB/TrEMBL
  ENSSSCG00030049270 UniProtKB/TrEMBL
  ENSSSCG00035055343 UniProtKB/TrEMBL
  ENSSSCG00045038259 UniProtKB/TrEMBL
  ENSSSCG00050071522 UniProtKB/TrEMBL
  ENSSSCG00055014038 UniProtKB/TrEMBL
  ENSSSCG00060070301 UniProtKB/TrEMBL
  ENSSSCG00065031493 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042074 ENTREZGENE
  ENSSSCT00000042074.2 UniProtKB/TrEMBL
  ENSSSCT00000053194 ENTREZGENE
  ENSSSCT00000053194.3 UniProtKB/TrEMBL
  ENSSSCT00005019032.1 UniProtKB/TrEMBL
  ENSSSCT00005019060.1 UniProtKB/TrEMBL
  ENSSSCT00005019077.1 UniProtKB/TrEMBL
  ENSSSCT00005019088.1 UniProtKB/TrEMBL
  ENSSSCT00005019127.1 UniProtKB/TrEMBL
  ENSSSCT00005019140.1 UniProtKB/TrEMBL
  ENSSSCT00015045673.1 UniProtKB/TrEMBL
  ENSSSCT00015046133.1 UniProtKB/TrEMBL
  ENSSSCT00015046290.1 UniProtKB/TrEMBL
  ENSSSCT00015046741.1 UniProtKB/TrEMBL
  ENSSSCT00015047093.1 UniProtKB/TrEMBL
  ENSSSCT00015047420.1 UniProtKB/TrEMBL
  ENSSSCT00015047898.1 UniProtKB/TrEMBL
  ENSSSCT00025103887.1 UniProtKB/TrEMBL
  ENSSSCT00025103994.1 UniProtKB/TrEMBL
  ENSSSCT00025104105.1 UniProtKB/TrEMBL
  ENSSSCT00025104215.1 UniProtKB/TrEMBL
  ENSSSCT00025104300.1 UniProtKB/TrEMBL
  ENSSSCT00025104453.1 UniProtKB/TrEMBL
  ENSSSCT00030068870.1 UniProtKB/TrEMBL
  ENSSSCT00030068916.1 UniProtKB/TrEMBL
  ENSSSCT00035073856.1 UniProtKB/TrEMBL
  ENSSSCT00035073869.1 UniProtKB/TrEMBL
  ENSSSCT00045066456.1 UniProtKB/TrEMBL
  ENSSSCT00045066502.1 UniProtKB/TrEMBL
  ENSSSCT00045066551.1 UniProtKB/TrEMBL
  ENSSSCT00045066597.1 UniProtKB/TrEMBL
  ENSSSCT00045066622.1 UniProtKB/TrEMBL
  ENSSSCT00045066639.1 UniProtKB/TrEMBL
  ENSSSCT00045066672.1 UniProtKB/TrEMBL
  ENSSSCT00045066691.1 UniProtKB/TrEMBL
  ENSSSCT00050097551.1 UniProtKB/TrEMBL
  ENSSSCT00050097556.1 UniProtKB/TrEMBL
  ENSSSCT00055027669.1 UniProtKB/TrEMBL
  ENSSSCT00055027793.1 UniProtKB/TrEMBL
  ENSSSCT00060095933.1 UniProtKB/TrEMBL
  ENSSSCT00065042631.1 UniProtKB/TrEMBL
  ENSSSCT00065042642.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Csc1-like UniProtKB/TrEMBL
  Csc1_N UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PHM7_cyt UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RSN1_7TM UniProtKB/TrEMBL
NCBI Gene TMEM63A ENTREZGENE
PANTHER PTHR13018 UniProtKB/TrEMBL
  PTHR13018:SF24 UniProtKB/TrEMBL
Pfam PHM7_cyt UniProtKB/TrEMBL
  RSN1_7TM UniProtKB/TrEMBL
  RSN1_TM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A286ZLG0_PIG UniProtKB/TrEMBL
  A0A480HSF1 ENTREZGENE
  A0A480I7E5 ENTREZGENE, UniProtKB/TrEMBL
  A0A480IME3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NFX6_PIG UniProtKB/TrEMBL
  A0A8D0NGQ7_PIG UniProtKB/TrEMBL
  A0A8D0NI25_PIG UniProtKB/TrEMBL
  A0A8D0NKU0_PIG UniProtKB/TrEMBL
  A0A8D0TH61_PIG UniProtKB/TrEMBL
  A0A8D0TM44_PIG UniProtKB/TrEMBL
  A0A8D0TMC1_PIG UniProtKB/TrEMBL
  A0A8D0TMF5_PIG UniProtKB/TrEMBL
  A0A8D0U1G5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0V1V8_PIG UniProtKB/TrEMBL
  A0A8D0V237_PIG UniProtKB/TrEMBL
  A0A8D0X7P4_PIG UniProtKB/TrEMBL
  A0A8D1JAS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1JHK3_PIG UniProtKB/TrEMBL
  A0A8D1QMV7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1QNE2_PIG UniProtKB/TrEMBL
  A0A8D1WR25 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Y957 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Y9Y6_PIG UniProtKB/TrEMBL
UniProt Secondary A0A480HSF1 UniProtKB/TrEMBL
VGNC ID VGNC:96198 ENTREZGENE